Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03816 and RBAM_023940

See Amino acid alignment / Visit BSNT_03816 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:09
# Commandline: needle
#    -asequence dna-align/BSNT_03816___nadD.1.9828.seq
#    -bsequence dna-align/RBAM_023940___nadD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03816___nadD-RBAM_023940___nadD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03816___nadD-RBAM_023940___nadD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03816___nadD
# 2: RBAM_023940___nadD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 573
# Identity:     464/573 (81.0%)
# Similarity:   464/573 (81.0%)
# Gaps:           6/573 ( 1.0%)
# Score: 1848.0
# 
#
#=======================================

BSNT_03816___      1 ATGAAGAAAATCGGAATTTTCGGAGGCACGTTTGACCCTCCGCATAATGG     50
                     |||||||||||||||||.|||||.|||||.||||||||||||||.||.||
RBAM_023940__      1 ATGAAGAAAATCGGAATATTCGGGGGCACATTTGACCCTCCGCACAACGG     50

BSNT_03816___     51 TCACCTCTTAATGGCGAATGAGGTGCTGTACCAGGCGGGGCTTGATGAAA    100
                     .||.||..|.|||||.|||||.||.||..|.|||||||.|||.|||||.|
RBAM_023940__     51 ACATCTTCTGATGGCTAATGAAGTCCTTCATCAGGCGGAGCTCGATGAGA    100

BSNT_03816___    101 TTTGGTTTATGCCTAATCAAATTCCGCCGCATAAACAGAACGAAGACTAT    150
                     |||||||||||||.|||.||||.||.||||||||.|||||.|||||||.|
RBAM_023940__    101 TTTGGTTTATGCCCAATAAAATCCCTCCGCATAAGCAGAATGAAGACTTT    150

BSNT_03816___    151 ACCGACAGCTTTCATCGCGTGGAAATGCTAAAGCTTGCAATTCA-ATCTA    199
                     ||.||||||...||.||.|||||.|||||.||||||||.| ||| .||||
RBAM_023940__    151 ACAGACAGCCGGCACCGGGTGGAGATGCTGAAGCTTGCCA-TCAGCTCTA    199

BSNT_03816___    200 A-TCCGTCCTTTAAGCTGGAGCTTGTTGAAATGGAAAGAGAAGGACCGTC    248
                     | |||| .|||||||||.|||||||..||||||||..|..||||.||.||
RBAM_023940__    200 ATTCCG-GCTTTAAGCTTGAGCTTGCGGAAATGGACCGGAAAGGCCCTTC    248

BSNT_03816___    249 ATATACCTTTGATACCGTTTCTTTACTGAAGCAGCGTTATCCAAATGATC    298
                     .|||||||.|||||||||...||||||||||.||||..|.||.||.||..
RBAM_023940__    249 TTATACCTATGATACCGTCCGTTTACTGAAGGAGCGGCACCCGAACGACA    298

BSNT_03816___    299 AGCTGTTCTTTATTATCGGCGCTGATATGATTGAATATTTGCCGAAATGG    348
                     ||||.||||||||||||||.||.|||||||||||||||.|||||||||||
RBAM_023940__    299 AGCTTTTCTTTATTATCGGGGCGGATATGATTGAATATCTGCCGAAATGG    348

BSNT_03816___    349 TATAAGCTGGACGAGCTGCTGAACCTCATTCAATTTATTGGAGTAAAGCG    398
                     ||.||.||||||||.|||||.|..||||||||||||||.|||||...|||
RBAM_023940__    349 TACAAACTGGACGAACTGCTCACGCTCATTCAATTTATCGGAGTGCGGCG    398

BSNT_03816___    399 CCCCGGTTTTCATGTTGAAACCCCTTATCCGCTTCTCTTTGCAGACGTTC    448
                     |||.||.|.||||.||||.|||||.||.|||||.||.|||||.|||||||
RBAM_023940__    399 CCCGGGGTATCATATTGAGACCCCGTACCCGCTGCTTTTTGCCGACGTTC    448

BSNT_03816___    449 CGGAATTTGAGGTATCATCAACTATGATAAGGGAACGGTTTAAAAGCAAG    498
                     ||||||||||.||.||.|||||.|||.|.||.|||| ||.|.|||||||.
RBAM_023940__    449 CGGAATTTGACGTTTCGTCAACGATGCTGAGAGAAC-GTCTCAAAGCAAA    497

BSNT_03816___    499 A-AGCCCACTGACTACTTAATCCCTGATAAAGTGAAGAAGTATGTAGAGG    547
                     | ||||.||..|.||||||||.||.||||||||||.|.|||||.||||||
RBAM_023940__    498 AGAGCCGACGCAATACTTAATGCCGGATAAAGTGAGGCAGTATATAGAGG    547

BSNT_03816___    548 AGAATGGTTTATATGAATCGTGA    570
                     ||||||.||||||||||||||||
RBAM_023940__    548 AGAATGATTTATATGAATCGTGA    570


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03816 and RBAM_023940

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
