Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03796 and RBAM_023800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:07
# Commandline: needle
# -asequence dna-align/BSNT_03796___hemN.1.9828.seq
# -bsequence dna-align/RBAM_023800___hemN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03796___hemN-RBAM_023800___hemN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03796___hemN-RBAM_023800___hemN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03796___hemN
# 2: RBAM_023800___hemN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1186
# Identity: 884/1186 (74.5%)
# Similarity: 884/1186 (74.5%)
# Gaps: 92/1186 ( 7.8%)
# Score: 3268.0
#
#
#=======================================
BSNT_03796___ 1 TTGAAATCAGCTTATATCCATATCCCATTTTGTGAGCATATTTGCCACTA 50
.||||||||||||||||.|||||.||.||||||||||||||.||||||||
RBAM_023800__ 1 ATGAAATCAGCTTATATTCATATTCCGTTTTGTGAGCATATCTGCCACTA 50
BSNT_03796___ 51 CTGCGATTTCAATAAATATTTTATTCAAAGTCAGCCAGTCGACGAGTATT 100
.||||||||||||||||||||||||||.||.|||||.|||||.|||||.|
RBAM_023800__ 51 TTGCGATTTCAATAAATATTTTATTCAGAGCCAGCCTGTCGATGAGTACT 100
BSNT_03796___ 101 TAAACGCACTCGAACAGGAAATGATAAATACAATAGCAAAAAC---CGGG 147
|||||.||||||||.||||||||||||||||||||| ||| ||||
RBAM_023800__ 101 TAAACTCACTCGAAAAGGAAATGATAAATACAATAG----AACGGACGGG 146
BSNT_03796___ 148 -CAGCCTGATCTTAAAACAATCTTTATCGGAGGAGGCACGCCAACCTC-- 194
|..||||||||....||.||.||||||||.|||||||||||.||.||
RBAM_023800__ 147 ACGCCCTGATCTCCGCACGATTTTTATCGGGGGAGGCACGCCGACATCGC 196
BSNT_03796___ 195 -----CCTGTCTGAGGAACAGCTTAAAAAGCTAATGGA---CATGATCAA 236
||.||| |||||..||||..|.||||| ||| || |
RBAM_023800__ 197 TCTCACCCGTC-------CAGCTGGAAAAATTGATGGATTCCAT--TC-A 236
BSNT_03796___ 237 CCGCGTGCTAAAGCC--CTCAAGCGACTTATCGGAATTTGCGGTTGAAGC 284
|||||||||.||||| ||.|.| ||||.|| .||||||||.|..|||||
RBAM_023800__ 237 CCGCGTGCTGAAGCCTTCTGACG-GACTCAT-AGAATTTGCCGCGGAAGC 284
BSNT_03796___ 285 GAATCCGGACGACTTGTCCGCAGAGAAATTAAAAAT-ATTAAAAGAAGCA 333
|||||||||.||.||||||.|.||.||||||||||| ||.|||| |.||.
RBAM_023800__ 285 GAATCCGGATGATTTGTCCCCGGAAAAATTAAAAATCATGAAAA-ATGCC 333
BSNT_03796___ 334 GGCGTAAATCGCCTCAGCTTTGGTGTGCAAACGTTCGAAGACGATCTGTT 383
||.||.||.||.||.|||||.|||||.|||||.||.|||||.||.||.||
RBAM_023800__ 334 GGTGTCAACCGGCTGAGCTTCGGTGTTCAAACCTTTGAAGATGAGCTTTT 383
BSNT_03796___ 384 AGAAAAAATCGGCCGAGTGCACAAGCAAAAAGATGTATTCACCTCTTTTG 433
|.||||||||||..|||||||.||.|||||.||.||||||||.||.||||
RBAM_023800__ 384 ACAAAAAATCGGAAGAGTGCATAAACAAAAGGACGTATTCACTTCCTTTG 433
BSNT_03796___ 434 AAAGAGCGCGGGATATCGGTTTTGAGAATATCAGTCTTGATCTCATGTTC 483
||.|.|||.|||.|.||||.||.||.||.||||||||.|||.|.||||||
RBAM_023800__ 434 AACGTGCGAGGGCTCTCGGCTTCGACAACATCAGTCTCGATTTAATGTTC 483
BSNT_03796___ 484 GGGCTTCCGGGGCAAACCCTCAAGC--ATCTGGAACATTCCATAAACACT 531
||.||.|||||.||.||.|| .|| ||||.||..|||||.|.||.||.
RBAM_023800__ 484 GGCCTGCCGGGTCAGACGCT--GGCCGATCTTGACAATTCCGTCAAAACG 531
BSNT_03796___ 532 GCTTTATCACTGGATGCCGAGCATTATTCCGTTTACTCCCTTATTGTAGA 581
|||||.||.||.|||||.|||||.||.|||||||||||.||.||.|||||
RBAM_023800__ 532 GCTTTGTCTCTTGATGCGGAGCACTACTCCGTTTACTCGCTGATCGTAGA 581
BSNT_03796___ 582 ACCGAAAACGGTATTTTATAATTTGATGCAAAAAGGGCGGCTTCATCTTC 631
.|||||||||||.|||||||||||.|||||||||||.||.||.|||||.|
RBAM_023800__ 582 GCCGAAAACGGTGTTTTATAATTTAATGCAAAAAGGCCGCCTGCATCTCC 631
BSNT_03796___ 632 CGCCGCAGGAGCAGGAAGCTGAAATGTATGAAATGGTGATGAGCCAGATG 681
||.||||.||.||.||.||.||.||||||||||.|||.|||||.||||||
RBAM_023800__ 632 CGGCGCAAGAACAAGAGGCCGAGATGTATGAAACGGTCATGAGGCAGATG 681
BSNT_03796___ 682 ---GAAGCTCACGGCATTCATCAATATGAAATCAGCAACTTTGCTAAGGC 728
||||| .|||||.|.||||||.||.|||||.||||||||.|||.|
RBAM_023800__ 682 AGTGAAGC---GGGCATCCGTCAATACGAGATCAGTAACTTTGCAAAGCC 728
BSNT_03796___ 729 AGGCAT-GGAATCTAAGCACAATCTAACGTATTGGAGCAACGAACAATAT 777
.|| || .||.||..||||.|||||.||||||||||||||.|||.|.|||
RBAM_023800__ 729 CGG-ATACGAGTCCCAGCATAATCTGACGTATTGGAGCAATGAAGAGTAT 777
BSNT_03796___ 778 TTCGGTTTCGGAGCCGGCGCTCACGGATATATCGGCGGCACACGAACAGT 827
||||||||.||.||.||||||||||||||||||.|||||||.||.||.||
RBAM_023800__ 778 TTCGGTTTTGGCGCAGGCGCTCACGGATATATCAGCGGCACGCGCACCGT 827
BSNT_03796___ 828 GAACGTCGGACCTGTTAAGCATTACATTGACCTGATAGCTGAAAAGGGTT 877
.||||.|||.|||||.||.||||||||..|.||.||.|..||||||||..
RBAM_023800__ 828 CAACGCCGGGCCTGTGAAACATTACATGCAGCTCATCGAAGAAAAGGGGC 877
BSNT_03796___ 878 TTCCGTACAGAGATACACATGAAGTAACAACAGAAGAACAGATTGAGGAA 927
|.||.|||.|.||.||.||.||.||.|||...||.||.||||||||.|||
RBAM_023800__ 878 TGCCTTACCGTGACACGCACGAGGTGACACGTGAGGAGCAGATTGAAGAA 927
BSNT_03796___ 928 GAAATGTTTTTAGGTTTGAGAAAAACAGCCGGTGTCAGCAAAAAACGATT 977
||||||||..|.|||.|.|||||||...||||.|| |.||||
RBAM_023800__ 928 GAAATGTTCCTCGGTCTCAGAAAAATGTCCGGCGT----ACAAAA----- 968
BSNT_03796___ 978 CGCA----------GAAAAATACGGCCGTTCCCTGGATGGACT-TTTCCC 1016
||| ||.||||.|||.||.||..|.||.|.||| ||||||
RBAM_023800__ 969 -GCAAGCTTTTCTTGATAAATTCGGACGCTCGGTCGACGAACTGTTTCCC 1017
BSNT_03796___ 1017 AAGCGTGT--TAAAAGACCTCGCTGAAAAAGGGCTGATT-----CAC--- 1056
.| ||| |.|||||..|..|.||||||||.|||||| |||
RBAM_023800__ 1018 GA---TGTTCTCAAAGATTTAACCGAAAAAGGCCTGATTTGTGACACGGA 1064
BSNT_03796___ 1057 --AATTCGGAGTCTGCCGTTTATTTGACTCATCAAGGGAAATTATTAGGC 1104
||| |.|||...||.||.|||.|.||.|||||||||||.
RBAM_023800__ 1065 AGAAT----------CGGTTGCATTAACGCATGAGGGCAAATTATTAGGA 1104
BSNT_03796___ 1105 AATGAAGTTTTTGGCGCTTTTTTGGGTGAGTTATAA 1140
|||||.||||||||||||||||||||||||||||||
RBAM_023800__ 1105 AATGAGGTTTTTGGCGCTTTTTTGGGTGAGTTATAA 1140
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