Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03796 and RBAM_023800

See Amino acid alignment / Visit BSNT_03796 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:07
# Commandline: needle
#    -asequence dna-align/BSNT_03796___hemN.1.9828.seq
#    -bsequence dna-align/RBAM_023800___hemN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03796___hemN-RBAM_023800___hemN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03796___hemN-RBAM_023800___hemN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03796___hemN
# 2: RBAM_023800___hemN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1186
# Identity:     884/1186 (74.5%)
# Similarity:   884/1186 (74.5%)
# Gaps:          92/1186 ( 7.8%)
# Score: 3268.0
# 
#
#=======================================

BSNT_03796___      1 TTGAAATCAGCTTATATCCATATCCCATTTTGTGAGCATATTTGCCACTA     50
                     .||||||||||||||||.|||||.||.||||||||||||||.||||||||
RBAM_023800__      1 ATGAAATCAGCTTATATTCATATTCCGTTTTGTGAGCATATCTGCCACTA     50

BSNT_03796___     51 CTGCGATTTCAATAAATATTTTATTCAAAGTCAGCCAGTCGACGAGTATT    100
                     .||||||||||||||||||||||||||.||.|||||.|||||.|||||.|
RBAM_023800__     51 TTGCGATTTCAATAAATATTTTATTCAGAGCCAGCCTGTCGATGAGTACT    100

BSNT_03796___    101 TAAACGCACTCGAACAGGAAATGATAAATACAATAGCAAAAAC---CGGG    147
                     |||||.||||||||.|||||||||||||||||||||    |||   ||||
RBAM_023800__    101 TAAACTCACTCGAAAAGGAAATGATAAATACAATAG----AACGGACGGG    146

BSNT_03796___    148 -CAGCCTGATCTTAAAACAATCTTTATCGGAGGAGGCACGCCAACCTC--    194
                      |..||||||||....||.||.||||||||.|||||||||||.||.||  
RBAM_023800__    147 ACGCCCTGATCTCCGCACGATTTTTATCGGGGGAGGCACGCCGACATCGC    196

BSNT_03796___    195 -----CCTGTCTGAGGAACAGCTTAAAAAGCTAATGGA---CATGATCAA    236
                          ||.|||       |||||..||||..|.|||||   |||  || |
RBAM_023800__    197 TCTCACCCGTC-------CAGCTGGAAAAATTGATGGATTCCAT--TC-A    236

BSNT_03796___    237 CCGCGTGCTAAAGCC--CTCAAGCGACTTATCGGAATTTGCGGTTGAAGC    284
                     |||||||||.|||||  ||.|.| ||||.|| .||||||||.|..|||||
RBAM_023800__    237 CCGCGTGCTGAAGCCTTCTGACG-GACTCAT-AGAATTTGCCGCGGAAGC    284

BSNT_03796___    285 GAATCCGGACGACTTGTCCGCAGAGAAATTAAAAAT-ATTAAAAGAAGCA    333
                     |||||||||.||.||||||.|.||.||||||||||| ||.|||| |.||.
RBAM_023800__    285 GAATCCGGATGATTTGTCCCCGGAAAAATTAAAAATCATGAAAA-ATGCC    333

BSNT_03796___    334 GGCGTAAATCGCCTCAGCTTTGGTGTGCAAACGTTCGAAGACGATCTGTT    383
                     ||.||.||.||.||.|||||.|||||.|||||.||.|||||.||.||.||
RBAM_023800__    334 GGTGTCAACCGGCTGAGCTTCGGTGTTCAAACCTTTGAAGATGAGCTTTT    383

BSNT_03796___    384 AGAAAAAATCGGCCGAGTGCACAAGCAAAAAGATGTATTCACCTCTTTTG    433
                     |.||||||||||..|||||||.||.|||||.||.||||||||.||.||||
RBAM_023800__    384 ACAAAAAATCGGAAGAGTGCATAAACAAAAGGACGTATTCACTTCCTTTG    433

BSNT_03796___    434 AAAGAGCGCGGGATATCGGTTTTGAGAATATCAGTCTTGATCTCATGTTC    483
                     ||.|.|||.|||.|.||||.||.||.||.||||||||.|||.|.||||||
RBAM_023800__    434 AACGTGCGAGGGCTCTCGGCTTCGACAACATCAGTCTCGATTTAATGTTC    483

BSNT_03796___    484 GGGCTTCCGGGGCAAACCCTCAAGC--ATCTGGAACATTCCATAAACACT    531
                     ||.||.|||||.||.||.||  .||  ||||.||..|||||.|.||.||.
RBAM_023800__    484 GGCCTGCCGGGTCAGACGCT--GGCCGATCTTGACAATTCCGTCAAAACG    531

BSNT_03796___    532 GCTTTATCACTGGATGCCGAGCATTATTCCGTTTACTCCCTTATTGTAGA    581
                     |||||.||.||.|||||.|||||.||.|||||||||||.||.||.|||||
RBAM_023800__    532 GCTTTGTCTCTTGATGCGGAGCACTACTCCGTTTACTCGCTGATCGTAGA    581

BSNT_03796___    582 ACCGAAAACGGTATTTTATAATTTGATGCAAAAAGGGCGGCTTCATCTTC    631
                     .|||||||||||.|||||||||||.|||||||||||.||.||.|||||.|
RBAM_023800__    582 GCCGAAAACGGTGTTTTATAATTTAATGCAAAAAGGCCGCCTGCATCTCC    631

BSNT_03796___    632 CGCCGCAGGAGCAGGAAGCTGAAATGTATGAAATGGTGATGAGCCAGATG    681
                     ||.||||.||.||.||.||.||.||||||||||.|||.|||||.||||||
RBAM_023800__    632 CGGCGCAAGAACAAGAGGCCGAGATGTATGAAACGGTCATGAGGCAGATG    681

BSNT_03796___    682 ---GAAGCTCACGGCATTCATCAATATGAAATCAGCAACTTTGCTAAGGC    728
                        |||||   .|||||.|.||||||.||.|||||.||||||||.|||.|
RBAM_023800__    682 AGTGAAGC---GGGCATCCGTCAATACGAGATCAGTAACTTTGCAAAGCC    728

BSNT_03796___    729 AGGCAT-GGAATCTAAGCACAATCTAACGTATTGGAGCAACGAACAATAT    777
                     .|| || .||.||..||||.|||||.||||||||||||||.|||.|.|||
RBAM_023800__    729 CGG-ATACGAGTCCCAGCATAATCTGACGTATTGGAGCAATGAAGAGTAT    777

BSNT_03796___    778 TTCGGTTTCGGAGCCGGCGCTCACGGATATATCGGCGGCACACGAACAGT    827
                     ||||||||.||.||.||||||||||||||||||.|||||||.||.||.||
RBAM_023800__    778 TTCGGTTTTGGCGCAGGCGCTCACGGATATATCAGCGGCACGCGCACCGT    827

BSNT_03796___    828 GAACGTCGGACCTGTTAAGCATTACATTGACCTGATAGCTGAAAAGGGTT    877
                     .||||.|||.|||||.||.||||||||..|.||.||.|..||||||||..
RBAM_023800__    828 CAACGCCGGGCCTGTGAAACATTACATGCAGCTCATCGAAGAAAAGGGGC    877

BSNT_03796___    878 TTCCGTACAGAGATACACATGAAGTAACAACAGAAGAACAGATTGAGGAA    927
                     |.||.|||.|.||.||.||.||.||.|||...||.||.||||||||.|||
RBAM_023800__    878 TGCCTTACCGTGACACGCACGAGGTGACACGTGAGGAGCAGATTGAAGAA    927

BSNT_03796___    928 GAAATGTTTTTAGGTTTGAGAAAAACAGCCGGTGTCAGCAAAAAACGATT    977
                     ||||||||..|.|||.|.|||||||...||||.||    |.||||     
RBAM_023800__    928 GAAATGTTCCTCGGTCTCAGAAAAATGTCCGGCGT----ACAAAA-----    968

BSNT_03796___    978 CGCA----------GAAAAATACGGCCGTTCCCTGGATGGACT-TTTCCC   1016
                      |||          ||.||||.|||.||.||..|.||.|.||| ||||||
RBAM_023800__    969 -GCAAGCTTTTCTTGATAAATTCGGACGCTCGGTCGACGAACTGTTTCCC   1017

BSNT_03796___   1017 AAGCGTGT--TAAAAGACCTCGCTGAAAAAGGGCTGATT-----CAC---   1056
                     .|   |||  |.|||||..|..|.||||||||.||||||     |||   
RBAM_023800__   1018 GA---TGTTCTCAAAGATTTAACCGAAAAAGGCCTGATTTGTGACACGGA   1064

BSNT_03796___   1057 --AATTCGGAGTCTGCCGTTTATTTGACTCATCAAGGGAAATTATTAGGC   1104
                       |||          |.|||...||.||.|||.|.||.|||||||||||.
RBAM_023800__   1065 AGAAT----------CGGTTGCATTAACGCATGAGGGCAAATTATTAGGA   1104

BSNT_03796___   1105 AATGAAGTTTTTGGCGCTTTTTTGGGTGAGTTATAA   1140
                     |||||.||||||||||||||||||||||||||||||
RBAM_023800__   1105 AATGAGGTTTTTGGCGCTTTTTTGGGTGAGTTATAA   1140


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