Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03795 and RBAM_023790
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:07
# Commandline: needle
# -asequence dna-align/BSNT_03795___hrcA.1.9828.seq
# -bsequence dna-align/RBAM_023790___hrcA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03795___hrcA-RBAM_023790___hrcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03795___hrcA-RBAM_023790___hrcA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03795___hrcA
# 2: RBAM_023790___hrcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1042
# Identity: 854/1042 (82.0%)
# Similarity: 854/1042 (82.0%)
# Gaps: 20/1042 ( 1.9%)
# Score: 3502.5
#
#
#=======================================
BSNT_03795___ 1 ATGTTAACAAATCGTCAGCTGCTGATCCTTCAGGTTATAATCAACGATTT 50
|||||||||||||||||||||.|||||||.||.||.||.||.||.|||||
RBAM_023790__ 1 ATGTTAACAAATCGTCAGCTGTTGATCCTGCAAGTGATTATTAATGATTT 50
BSNT_03795___ 51 TATTAAATCGGCACAGCCGGTGGGATCAAGAACTCTTTCGAAAAAAGATG 100
|||..||||.||.|||||.||.|||||||||||||||||.||||||||.|
RBAM_023790__ 51 TATACAATCAGCGCAGCCTGTAGGATCAAGAACTCTTTCAAAAAAAGACG 100
BSNT_03795___ 101 AAATCACATTTAGCTCTGCAACAATAAGAAACGAGATGGCTGACTTGGAG 150
|.||.|||||.|||||||||||.||.||||||||||||||||||||||||
RBAM_023790__ 101 AGATTACATTCAGCTCTGCAACGATCAGAAACGAGATGGCTGACTTGGAG 150
BSNT_03795___ 151 GAATTGGGCTTTATTGAAAAAACCCATTCATCCTCAGGACGTGTTCCGTC 200
|||||||||||||||||||||||||||||||||||||||||..|||||||
RBAM_023790__ 151 GAATTGGGCTTTATTGAAAAAACCCATTCATCCTCAGGACGGATTCCGTC 200
BSNT_03795___ 201 AGAAAAAGGGTATCGGTACTATGTTGACCATTTGCTGTCACCCGTCAAAC 250
.|||||||||||..||||.|||||.||.||||||||||||||||||||.|
RBAM_023790__ 201 GGAAAAAGGGTACAGGTATTATGTCGATCATTTGCTGTCACCCGTCAAGC 250
BSNT_03795___ 251 TGACGAAAAGCGACCTGGACCAAATCCACTCGATCTTCAAAGAGAAAATT 300
||||.||||.|||.|||||...|||.||||||||.||.|||||.|||||.
RBAM_023790__ 251 TGACAAAAACCGATCTGGATTTAATTCACTCGATATTTAAAGAAAAAATC 300
BSNT_03795___ 301 TTCGAGCTGGAGAAGACAGTTCAAAAATCAGCGCAAATTTTGTCCGATCT 350
|||||||||||.||.|||||.|||||||||||||||||..|||||||.||
RBAM_023790__ 301 TTCGAGCTGGAAAAAACAGTCCAAAAATCAGCGCAAATCCTGTCCGACCT 350
BSNT_03795___ 351 GACGAATTACACATCCATCGTACTCGGGCCGAAGCTGAGTGAGAATTACC 400
|||.||.||||||||.||.||.||||||||||.||||||.|||||.||.|
RBAM_023790__ 351 GACAAACTACACATCGATTGTCCTCGGGCCGACGCTGAGCGAGAACTATC 400
BSNT_03795___ 401 TTAAACAGATTCAAATCATTCCGATTCAGCCTGATATGGCGGTAGCGATT 450
|||||||||||||||||.|.|||||.|||||.||||.||||||.||.||.
RBAM_023790__ 401 TTAAACAGATTCAAATCGTACCGATCCAGCCGGATAAGGCGGTCGCCATC 450
BSNT_03795___ 451 CTCGTTACCAATACGGGGCATGTGGAAAACAAAACGATTAACTTTCCGAC 500
|||||.||.||.|||||||||||.||||||...||.||.||.||.|||.|
RBAM_023790__ 451 CTCGTCACGAACACGGGGCATGTCGAAAACCGCACCATCAATTTCCCGGC 500
BSNT_03795___ 501 CAAAATGGATCTGTCTGATATTGAAAAACTGGTAAATATACTGAACGACC 550
.|||.|||||.||.|.|||||||||||||||||.||||||||.|||||.|
RBAM_023790__ 501 TAAAGTGGATTTGGCCGATATTGAAAAACTGGTCAATATACTAAACGATC 550
BSNT_03795___ 551 GTTTAAGC-GGCGTTCCAATGGATGAACTGAATGAGCGCATATTTAAAGA 599
|.|| ||| |||||.||.|||||.|||||||||||||||||.||.|||||
RBAM_023790__ 551 GATT-AGCGGGCGTGCCGATGGACGAACTGAATGAGCGCATTTTCAAAGA 599
BSNT_03795___ 600 AGTTGTCATGTACCTAAGACAGCACATTAAAAACTATGACAATATACTCG 649
.|||||||..||..||||.|||||.||....||||||||||..|||||.|
RBAM_023790__ 600 GGTTGTCACATATTTAAGGCAGCATATCGCCAACTATGACAGCATACTTG 649
BSNT_03795___ 650 ACGCGCTTCGTTCAACCTTTCATTCCACAAATCACATTGAAAAGTTGTTT 699
|..||||.||.||.||.||.|||.|..|....|||.||||.||.||||||
RBAM_023790__ 650 AATCGCTCCGCTCTACATTCCATCCGGCGGCCCACGTTGAGAAATTGTTT 699
BSNT_03795___ 700 TTTGGCGGGAAAATCAATATGCTGAACCAGCCTGAGTTCCATGATATCAC 749
||.|||||.||.|||||.||||||||.|||||.||||||||||||||
RBAM_023790__ 700 TTCGGCGGAAAGATCAACATGCTGAATCAGCCGGAGTTCCATGATAT--- 746
BSNT_03795___ 750 CCGA----GTTCGGTCGCTGCTT-TCATTAATTGAGAAAGAACAGGATGT 794
.|| ||.||.||||| ||| ||.||||||||.|||||.||||||||
RBAM_023790__ 747 -TGAAAGGGTCCGCTCGCT-CTTATCTTTAATTGAAAAAGAGCAGGATGT 794
BSNT_03795___ 795 TTTAAAGCTGGTTCAATCCCC----GCGCACGGGAATTTCGATTAAAATC 840
|.|.||||||.||||.||..| || |||| |||||.||.||||||
RBAM_023790__ 795 TCTGAAGCTGTTTCAGTCATCAAAAGC---CGGG-ATTTCAATCAAAATC 840
BSNT_03795___ 841 GGAAAAGAAAACGACTATGAAGAGATGGAAAATTGCAGTCTGATTACGGC 890
||.||||||||||||||.|||||.||||||||.|||||..|.||.|||||
RBAM_023790__ 841 GGGAAAGAAAACGACTACGAAGAAATGGAAAACTGCAGCTTAATCACGGC 890
BSNT_03795___ 891 TTCTTATTCCGTAGACCAGAAGCAGATCGGCTCAATTGCGATTATCGGCC 940
..|.|||.|.||.||...||||||||||||.|||||.|||||||||||.|
RBAM_023790__ 891 CACCTATACAGTTGATACGAAGCAGATCGGATCAATCGCGATTATCGGGC 940
BSNT_03795___ 941 CGACCCGCATGAATTATTCCAGGGTTGTCAGCCTGCTTCAGCATGTGACT 990
||||.||||||||||||||.||.||.|||||||||||.|||||.||||||
RBAM_023790__ 941 CGACGCGCATGAATTATTCAAGAGTCGTCAGCCTGCTGCAGCACGTGACT 990
BSNT_03795___ 991 TCGGACTTGTCAAAAGCATTAACAAGTCTGTATGATGAATAA 1032
||||||||||||||||||||.||||||.||||||||||||||
RBAM_023790__ 991 TCGGACTTGTCAAAAGCATTCACAAGTTTGTATGATGAATAA 1032
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