Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03783 and RBAM_023690

See Amino acid alignment / Visit BSNT_03783 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:05
# Commandline: needle
#    -asequence dna-align/BSNT_03783___yqeZ.1.9828.seq
#    -bsequence dna-align/RBAM_023690___yqeZ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03783___yqeZ-RBAM_023690___yqeZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03783___yqeZ-RBAM_023690___yqeZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03783___yqeZ
# 2: RBAM_023690___yqeZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1348
# Identity:     968/1348 (71.8%)
# Similarity:   968/1348 (71.8%)
# Gaps:          65/1348 ( 4.8%)
# Score: 3281.5
# 
#
#=======================================

BSNT_03783___      1 TTGCTTC--AAATCAAA---GGATTCCGTGCTGCTCTTTTGGGTATATTT     45
                     ||| |||  |||..|||   |.|||.| ||.||||||.|||||..|||||
RBAM_023690__      1 TTG-TTCCGAAAAAAAACCGGAATTGC-TGTTGCTCTATTGGGCTTATTT     48

BSNT_03783___     46 TTGCTTTCTTTATTAGGCGTACAGCTGAACGCAAAAGCAGAAAAGCAAAC     95
                     .|..|.|||||||||||.||.||..|||||||.|||||.||..|.|.|.|
RBAM_023690__     49 GTATTATCTTTATTAGGGGTTCAATTGAACGCGAAAGCTGATCACCCATC     98

BSNT_03783___     96 TGTTTATGTGATTCCGGTTGAAAAAAATGTCGAACAGGGTCTCGTCTCGT    145
                     .||||||||.||.||||||||.|||||||||||||||||.||||.|||||
RBAM_023690__     99 GGTTTATGTCATCCCGGTTGAGAAAAATGTCGAACAGGGGCTCGCCTCGT    148

BSNT_03783___    146 TTTTGTCCCGTTCGTTACAAGACGCAAAGGA----TGCACATGCAGACCA    191
                     ||||.||.|||||.||..||||.||.|||||    .||.|.| ||   ||
RBAM_023690__    149 TTTTATCGCGTTCTTTCAAAGAAGCGAAGGAGTCCGGCGCGT-CA---CA    194

BSNT_03783___    192 TATTATTCTTGATATCAATACCCCGGGGGGATTGGTCAAATCTGCTATTG    241
                     .|||||||||||.||||||||.|||||.||....||..||||.||..|.|
RBAM_023690__    195 CATTATTCTTGACATCAATACACCGGGAGGCGCCGTTCAATCAGCCTTGG    244

BSNT_03783___    242 ATATGGCCGATTTGATAACCGATAGC---GAGATCCCCGTAACTGCATAT    288
                     ||||.||.|||   ||.|.||...||   ||..|.||.||.||.||.||.
RBAM_023690__    245 ATATTGCGGAT---ATCATCGGCCGCGCGGATGTGCCTGTTACCGCTTAC    291

BSNT_03783___    289 GTCAACAAACGCGCGTTGTCTGCTGGTGCATATATTGCACTTCAAGCAGA    338
                     ||.||.|||||.|||.|.|||||.||.||.|||||.||.|||||.|||||
RBAM_023690__    292 GTTAATAAACGGGCGCTTTCTGCCGGAGCGTATATAGCGCTTCAGGCAGA    341

BSNT_03783___    339 TCACATTTATATGGCGCCTGGCGGAAAAATGGGAGCCGCCGCGATTGTTG    388
                     |.|.||.|||||||||||.||||||||||||||.|||||.||.||..|.|
RBAM_023690__    342 TGAAATCTATATGGCGCCGGGCGGAAAAATGGGTGCCGCAGCCATCATCG    391

BSNT_03783___    389 ATGGCCAAGGCAATGCCGCTGACCAAAAAGCTCAATCACTTTGGCTGGCA    438
                     |.||..|.||.||.||.||.|||.||||.||.||||||||.||||..|||
RBAM_023690__    392 ACGGAAAGGGAAACGCGGCAGACAAAAAGGCCCAATCACTGTGGCATGCA    441

BSNT_03783___    439 GAGATGGAAGATGCCGCAGTGAAAAATAACCGCGATCCAAAATATGCGCT    488
                     ||.|||||.||.||.||.||.|||||.|||||..||||.|||||.||.||
RBAM_023690__    442 GAAATGGAGGACGCAGCGGTTAAAAACAACCGAAATCCGAAATACGCCCT    491

BSNT_03783___    489 CGCAATGGCTGACCCAGATATAGATGCCAAGGAAGTCGGCGCGCCTAAGG    538
                     .||.|||||.||.||.|..||..||||.|||||||..|||||.||.||||
RBAM_023690__    492 GGCCATGGCAGATCCCGCCATTAATGCAAAGGAAGCGGGCGCCCCAAAGG    541

BSNT_03783___    539 GAGATCTGCTGACACTTAACGCAGACAAGGCAACTGAGGTAGGCTATTCA    588
                     ||.|.|||||||||||.|..||.||.||.||.|..||.||.||.|||||.
RBAM_023690__    542 GAAAACTGCTGACACTGACAGCTGAAAAAGCCAAGGAAGTCGGATATTCG    591

BSNT_03783___    589 GAAGGCAC---TGCTGACAATTTGTCCACGCTCGTA---AAGAAGCTTGG    632
                     ||.|||||   |.|.|||  .|||   |.||| .||   |..|||||.||
RBAM_023690__    592 GAGGGCACGGTTTCAGAC--CTTG---ATGCT-TTATATACAAAGCTCGG    635

BSNT_03783___    633 GTTCGAAAAAGCGCA-GATCAGCTACGCAAAGGAGAGCTTT--GCGGAAA    679
                     .||.||.||||||.| |.||| |.|.|||||.|| ||.|||  .|||.||
RBAM_023690__    636 TTTTGACAAAGCGGATGTTCA-CCATGCAAAAGA-AGGTTTCGTCGGCAA    683

BSNT_03783___    680 AGACAGCAAGGTGGCTGACGAATCCGGTCATTGTCCC-----TATTCTGC    724
                     |....|| ||.||||||||.||||||.|..|||||||     ||||    
RBAM_023690__    684 ACTGGGC-AGATGGCTGACAAATCCGTTTGTTGTCCCCGTCTTATT----    728

BSNT_03783___    725 TGACAATCGCTT--TTT--TAGGTCTGACGGTGGAGCTTTTTTCCCCGGG    770
                          |.|||||  |||  |.|||.||||..|.||..|.||.||.|||||
RBAM_023690__    729 -----AACGCTTGCTTTGCTTGGTTTGACCATTGAATTGTTCTCGCCGGG    773

BSNT_03783___    771 TGTCGGCCTCCCTGGAACGGCTGGACTCATTGCGTTATTGCTGTTCTTCT    820
                     ..||||..|.||.||..|.|..|||||.|..||..|..|||||||.|||.
RBAM_023690__    774 CCTCGGGATACCGGGTGCCGTCGGACTGACGGCCATGCTGCTGTTTTTCA    823

BSNT_03783___    821 ACGGGCATCTCGCAGCAGGCCTTGCCGGGTATGAGACGGTTCTCCTCTTT    870
                     .|||||||.||||.||.||..|.|||||.|||||.|..||..||.|.|||
RBAM_023690__    824 CCGGGCATATCGCTGCCGGATTCGCCGGCTATGACAGCGTATTCTTATTT    873

BSNT_03783___    871 ATAGCAGGGGTGATTCTCATTCTGCTTGAGATTTTTCTTCCCGGAGGAAT    920
                     ...||.||..||.||.|.||.||..|.|||||.|||||.||||||||.||
RBAM_023690__    874 TGCGCGGGCTTGGTTTTTATCCTTTTAGAGATATTTCTGCCCGGAGGCAT    923

BSNT_03783___    921 CATTGG-ATTACTGGGCTT--AGGAGCGATTATTGCGAGCCTGTTTTTAG    967
                     .||.|| .|||..||..||  |||.|   |.||.||||||||.|||.|.|
RBAM_023690__    924 AATCGGTCTTATCGGTATTGCAGGCG---TCATCGCGAGCCTCTTTCTCG    970

BSNT_03783___    968 CCGCGGGGAGCTTCACTGTCATGGCGGTTTCTCTCTTGATCGCCTCAGCT   1017
                     |.|||||.|||||.||.||.||||||||||||||||||||||||...|||
RBAM_023690__    971 CTGCGGGCAGCTTTACCGTAATGGCGGTTTCTCTCTTGATCGCCATTGCT   1020

BSNT_03783___   1018 GTTTCGATTACAGCTTTTATTTTACTGACAAGGGTGTTGGGAAAGCGTAT   1067
                     ||.||.||||||||.|||||..||.|.||||||||||||||.||.||.||
RBAM_023690__   1021 GTGTCTATTACAGCCTTTATCATATTAACAAGGGTGTTGGGGAAACGAAT   1070

BSNT_03783___   1068 GAAATTCTTTAAGAAATTGATATTAAATGATTCTACAAACACGGAGAGCG   1117
                     ||||||||||||.|||||.|||||||.||||||.||||.|||||||||||
RBAM_023690__   1071 GAAATTCTTTAAAAAATTAATATTAACTGATTCAACAAGCACGGAGAGCG   1120

BSNT_03783___   1118 GCTACGTTTCAAATCA-AACGCGCACGGACTTAATGGGAAAAGTGGGTAT   1166
                     |.||.||||||||||| ||| ||.|||||..|..||||||||||.||..|
RBAM_023690__   1121 GTTATGTTTCAAATCAGAAC-CGGACGGAGCTGTTGGGAAAAGTCGGCGT   1169

BSNT_03783___   1167 AACCTTTACACCGCTGCGTCCTTCCGGTACCGTGATTATTGATGATGAAC   1216
                     .|||..||||.|.||..|.||.||.||.|||||.||||||||||||||||
RBAM_023690__   1170 TACCGCTACAGCCCTCAGACCGTCAGGCACCGTCATTATTGATGATGAAC   1219

BSNT_03783___   1217 GCCTTGACGTTGTTTCGGAGGGATCGTTTACAGAAAAAGATAAAAAAGTA   1266
                     |.||.||.||.||.|||||.|||||.||.||.||.|||||.|.|.|.||.
RBAM_023690__   1220 GTCTGGATGTCGTCTCGGAAGGATCATTCACTGAGAAAGACAGACAGGTG   1269

BSNT_03783___   1267 AAAGTGATTAAAGTAGAAGGCTCACGCATTGTCGTGAGAGAAATTTAA   1314
                     |||||..|.||||..|||||||||||||||||||||||||||||.||.
RBAM_023690__   1270 AAAGTAGTGAAAGCGGAAGGCTCACGCATTGTCGTGAGAGAAATATAG   1317


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