Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03783 and RBAM_023690
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:05
# Commandline: needle
# -asequence dna-align/BSNT_03783___yqeZ.1.9828.seq
# -bsequence dna-align/RBAM_023690___yqeZ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03783___yqeZ-RBAM_023690___yqeZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03783___yqeZ-RBAM_023690___yqeZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03783___yqeZ
# 2: RBAM_023690___yqeZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1348
# Identity: 968/1348 (71.8%)
# Similarity: 968/1348 (71.8%)
# Gaps: 65/1348 ( 4.8%)
# Score: 3281.5
#
#
#=======================================
BSNT_03783___ 1 TTGCTTC--AAATCAAA---GGATTCCGTGCTGCTCTTTTGGGTATATTT 45
||| ||| |||..||| |.|||.| ||.||||||.|||||..|||||
RBAM_023690__ 1 TTG-TTCCGAAAAAAAACCGGAATTGC-TGTTGCTCTATTGGGCTTATTT 48
BSNT_03783___ 46 TTGCTTTCTTTATTAGGCGTACAGCTGAACGCAAAAGCAGAAAAGCAAAC 95
.|..|.|||||||||||.||.||..|||||||.|||||.||..|.|.|.|
RBAM_023690__ 49 GTATTATCTTTATTAGGGGTTCAATTGAACGCGAAAGCTGATCACCCATC 98
BSNT_03783___ 96 TGTTTATGTGATTCCGGTTGAAAAAAATGTCGAACAGGGTCTCGTCTCGT 145
.||||||||.||.||||||||.|||||||||||||||||.||||.|||||
RBAM_023690__ 99 GGTTTATGTCATCCCGGTTGAGAAAAATGTCGAACAGGGGCTCGCCTCGT 148
BSNT_03783___ 146 TTTTGTCCCGTTCGTTACAAGACGCAAAGGA----TGCACATGCAGACCA 191
||||.||.|||||.||..||||.||.||||| .||.|.| || ||
RBAM_023690__ 149 TTTTATCGCGTTCTTTCAAAGAAGCGAAGGAGTCCGGCGCGT-CA---CA 194
BSNT_03783___ 192 TATTATTCTTGATATCAATACCCCGGGGGGATTGGTCAAATCTGCTATTG 241
.|||||||||||.||||||||.|||||.||....||..||||.||..|.|
RBAM_023690__ 195 CATTATTCTTGACATCAATACACCGGGAGGCGCCGTTCAATCAGCCTTGG 244
BSNT_03783___ 242 ATATGGCCGATTTGATAACCGATAGC---GAGATCCCCGTAACTGCATAT 288
||||.||.||| ||.|.||...|| ||..|.||.||.||.||.||.
RBAM_023690__ 245 ATATTGCGGAT---ATCATCGGCCGCGCGGATGTGCCTGTTACCGCTTAC 291
BSNT_03783___ 289 GTCAACAAACGCGCGTTGTCTGCTGGTGCATATATTGCACTTCAAGCAGA 338
||.||.|||||.|||.|.|||||.||.||.|||||.||.|||||.|||||
RBAM_023690__ 292 GTTAATAAACGGGCGCTTTCTGCCGGAGCGTATATAGCGCTTCAGGCAGA 341
BSNT_03783___ 339 TCACATTTATATGGCGCCTGGCGGAAAAATGGGAGCCGCCGCGATTGTTG 388
|.|.||.|||||||||||.||||||||||||||.|||||.||.||..|.|
RBAM_023690__ 342 TGAAATCTATATGGCGCCGGGCGGAAAAATGGGTGCCGCAGCCATCATCG 391
BSNT_03783___ 389 ATGGCCAAGGCAATGCCGCTGACCAAAAAGCTCAATCACTTTGGCTGGCA 438
|.||..|.||.||.||.||.|||.||||.||.||||||||.||||..|||
RBAM_023690__ 392 ACGGAAAGGGAAACGCGGCAGACAAAAAGGCCCAATCACTGTGGCATGCA 441
BSNT_03783___ 439 GAGATGGAAGATGCCGCAGTGAAAAATAACCGCGATCCAAAATATGCGCT 488
||.|||||.||.||.||.||.|||||.|||||..||||.|||||.||.||
RBAM_023690__ 442 GAAATGGAGGACGCAGCGGTTAAAAACAACCGAAATCCGAAATACGCCCT 491
BSNT_03783___ 489 CGCAATGGCTGACCCAGATATAGATGCCAAGGAAGTCGGCGCGCCTAAGG 538
.||.|||||.||.||.|..||..||||.|||||||..|||||.||.||||
RBAM_023690__ 492 GGCCATGGCAGATCCCGCCATTAATGCAAAGGAAGCGGGCGCCCCAAAGG 541
BSNT_03783___ 539 GAGATCTGCTGACACTTAACGCAGACAAGGCAACTGAGGTAGGCTATTCA 588
||.|.|||||||||||.|..||.||.||.||.|..||.||.||.|||||.
RBAM_023690__ 542 GAAAACTGCTGACACTGACAGCTGAAAAAGCCAAGGAAGTCGGATATTCG 591
BSNT_03783___ 589 GAAGGCAC---TGCTGACAATTTGTCCACGCTCGTA---AAGAAGCTTGG 632
||.||||| |.|.||| .||| |.||| .|| |..|||||.||
RBAM_023690__ 592 GAGGGCACGGTTTCAGAC--CTTG---ATGCT-TTATATACAAAGCTCGG 635
BSNT_03783___ 633 GTTCGAAAAAGCGCA-GATCAGCTACGCAAAGGAGAGCTTT--GCGGAAA 679
.||.||.||||||.| |.||| |.|.|||||.|| ||.||| .|||.||
RBAM_023690__ 636 TTTTGACAAAGCGGATGTTCA-CCATGCAAAAGA-AGGTTTCGTCGGCAA 683
BSNT_03783___ 680 AGACAGCAAGGTGGCTGACGAATCCGGTCATTGTCCC-----TATTCTGC 724
|....|| ||.||||||||.||||||.|..||||||| ||||
RBAM_023690__ 684 ACTGGGC-AGATGGCTGACAAATCCGTTTGTTGTCCCCGTCTTATT---- 728
BSNT_03783___ 725 TGACAATCGCTT--TTT--TAGGTCTGACGGTGGAGCTTTTTTCCCCGGG 770
|.||||| ||| |.|||.||||..|.||..|.||.||.|||||
RBAM_023690__ 729 -----AACGCTTGCTTTGCTTGGTTTGACCATTGAATTGTTCTCGCCGGG 773
BSNT_03783___ 771 TGTCGGCCTCCCTGGAACGGCTGGACTCATTGCGTTATTGCTGTTCTTCT 820
..||||..|.||.||..|.|..|||||.|..||..|..|||||||.|||.
RBAM_023690__ 774 CCTCGGGATACCGGGTGCCGTCGGACTGACGGCCATGCTGCTGTTTTTCA 823
BSNT_03783___ 821 ACGGGCATCTCGCAGCAGGCCTTGCCGGGTATGAGACGGTTCTCCTCTTT 870
.|||||||.||||.||.||..|.|||||.|||||.|..||..||.|.|||
RBAM_023690__ 824 CCGGGCATATCGCTGCCGGATTCGCCGGCTATGACAGCGTATTCTTATTT 873
BSNT_03783___ 871 ATAGCAGGGGTGATTCTCATTCTGCTTGAGATTTTTCTTCCCGGAGGAAT 920
...||.||..||.||.|.||.||..|.|||||.|||||.||||||||.||
RBAM_023690__ 874 TGCGCGGGCTTGGTTTTTATCCTTTTAGAGATATTTCTGCCCGGAGGCAT 923
BSNT_03783___ 921 CATTGG-ATTACTGGGCTT--AGGAGCGATTATTGCGAGCCTGTTTTTAG 967
.||.|| .|||..||..|| |||.| |.||.||||||||.|||.|.|
RBAM_023690__ 924 AATCGGTCTTATCGGTATTGCAGGCG---TCATCGCGAGCCTCTTTCTCG 970
BSNT_03783___ 968 CCGCGGGGAGCTTCACTGTCATGGCGGTTTCTCTCTTGATCGCCTCAGCT 1017
|.|||||.|||||.||.||.||||||||||||||||||||||||...|||
RBAM_023690__ 971 CTGCGGGCAGCTTTACCGTAATGGCGGTTTCTCTCTTGATCGCCATTGCT 1020
BSNT_03783___ 1018 GTTTCGATTACAGCTTTTATTTTACTGACAAGGGTGTTGGGAAAGCGTAT 1067
||.||.||||||||.|||||..||.|.||||||||||||||.||.||.||
RBAM_023690__ 1021 GTGTCTATTACAGCCTTTATCATATTAACAAGGGTGTTGGGGAAACGAAT 1070
BSNT_03783___ 1068 GAAATTCTTTAAGAAATTGATATTAAATGATTCTACAAACACGGAGAGCG 1117
||||||||||||.|||||.|||||||.||||||.||||.|||||||||||
RBAM_023690__ 1071 GAAATTCTTTAAAAAATTAATATTAACTGATTCAACAAGCACGGAGAGCG 1120
BSNT_03783___ 1118 GCTACGTTTCAAATCA-AACGCGCACGGACTTAATGGGAAAAGTGGGTAT 1166
|.||.||||||||||| ||| ||.|||||..|..||||||||||.||..|
RBAM_023690__ 1121 GTTATGTTTCAAATCAGAAC-CGGACGGAGCTGTTGGGAAAAGTCGGCGT 1169
BSNT_03783___ 1167 AACCTTTACACCGCTGCGTCCTTCCGGTACCGTGATTATTGATGATGAAC 1216
.|||..||||.|.||..|.||.||.||.|||||.||||||||||||||||
RBAM_023690__ 1170 TACCGCTACAGCCCTCAGACCGTCAGGCACCGTCATTATTGATGATGAAC 1219
BSNT_03783___ 1217 GCCTTGACGTTGTTTCGGAGGGATCGTTTACAGAAAAAGATAAAAAAGTA 1266
|.||.||.||.||.|||||.|||||.||.||.||.|||||.|.|.|.||.
RBAM_023690__ 1220 GTCTGGATGTCGTCTCGGAAGGATCATTCACTGAGAAAGACAGACAGGTG 1269
BSNT_03783___ 1267 AAAGTGATTAAAGTAGAAGGCTCACGCATTGTCGTGAGAGAAATTTAA 1314
|||||..|.||||..|||||||||||||||||||||||||||||.||.
RBAM_023690__ 1270 AAAGTAGTGAAAGCGGAAGGCTCACGCATTGTCGTGAGAGAAATATAG 1317
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