Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03777 and RBAM_023640
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:05
# Commandline: needle
# -asequence dna-align/BSNT_03777___phoH.1.9828.seq
# -bsequence dna-align/RBAM_023640___phoH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03777___phoH-RBAM_023640___phoH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03777___phoH-RBAM_023640___phoH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03777___phoH
# 2: RBAM_023640___phoH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 965
# Identity: 804/965 (83.3%)
# Similarity: 804/965 (83.3%)
# Gaps: 10/965 ( 1.0%)
# Score: 3354.0
#
#
#=======================================
BSNT_03777___ 1 ATGACAGAACATTTACTTGCGATGAATCAAAAACTGAAAAACCCGGACGA 50
|||.|||||||||||||||||||.|||||.||||||||||.|||||||||
RBAM_023640__ 1 ATGGCAGAACATTTACTTGCGATTAATCACAAACTGAAAAGCCCGGACGA 50
BSNT_03777___ 51 GGCGCTTTCACTCTTCGGGAACCAAGATTCTTTTTTGAAATTGATGGAGA 100
.||.|||||..|.|||||.|.|||||||.|.|||||..|.||.|||||||
RBAM_023640__ 51 AGCACTTTCTTTGTTCGGCAGCCAAGATGCCTTTTTACATTTAATGGAGA 100
BSNT_03777___ 101 AAGATCTGAATGTAAATA---TCATTACGCGCGGCGAGACGATTTATGTT 147
|.|||||| |..|.|| ||||.||.|||||.||.||.|||||.|||
RBAM_023640__ 101 AGGATCTG---GGCATTAGCCTCATCACACGCGGTGAAACCATTTACGTT 147
BSNT_03777___ 148 TCAGGCGATGATGAATCGTTTCAGATTGCAGACAGGCTGCTGGGATCGCT 197
||.||..||||||||.|.|||.||||.||.|||||..|..||||.|||||
RBAM_023640__ 148 TCCGGGAATGATGAAACATTTGAGATCGCTGACAGATTATTGGGCTCGCT 197
BSNT_03777___ 198 CCTCGCTTTAATTCGCAAGGGGATAGAGATCTCTGAACGTGATGTGATTT 247
|||..|||||||||||||||||||.|||||.||.||||||||||||.|.|
RBAM_023640__ 198 CCTTACTTTAATTCGCAAGGGGATCGAGATTTCGGAACGTGATGTGCTGT 247
BSNT_03777___ 248 ACGCCATCAAAATGGCAAAGAAGAATGAACTTGAATACTTTGAAAGCATG 297
|.|||.|.|||||||||||.||..|||||||.||.||.||||||||||||
RBAM_023640__ 248 ATGCCGTAAAAATGGCAAAAAAAGATGAACTGGACTATTTTGAAAGCATG 297
BSNT_03777___ 298 TATGAAGAAGAAATTACAAAAAACGCAAAAGGCAAATCAATCCGTGTAAA 347
||||||||.|||||.||.||||..||||||||||||.|.||||||||.||
RBAM_023640__ 298 TATGAAGAGGAAATAACGAAAACGGCAAAAGGCAAACCGATCCGTGTCAA 347
BSNT_03777___ 348 AACAATGGGACAGCGGGAATACGTGGCCGCTATGAAGCGGAATGACCTTG 397
|||.||.||.||.||.|||||.|||||.||.||||||...||.|||.|.|
RBAM_023640__ 348 AACCATCGGCCAACGAGAATATGTGGCGGCGATGAAGAAAAACGACATGG 397
BSNT_03777___ 398 TATTCGGCATTGGTCCGGCGGGAACCGGGAAAACGTACCTGGCTGTCGTA 447
|.||||||||.||.||||||||||||||.|||||.||..||||.||||||
RBAM_023640__ 398 TGTTCGGCATCGGACCGGCGGGAACCGGCAAAACTTATTTGGCGGTCGTA 447
BSNT_03777___ 448 AAAGCAGTCCATGCTTTAAAAAACGGACATATCAAAAAAATCATTTTAAC 497
|||||.||.|||||||||||||||||.||.||.|||||||||||||||||
RBAM_023640__ 448 AAAGCGGTGCATGCTTTAAAAAACGGCCACATTAAAAAAATCATTTTAAC 497
BSNT_03777___ 498 AAGACCTGCCGTGGAAGCCGGTGAAAGCCTTGGTTTTCTCCCAGGTGACC 547
||||||.||.|||||||||||.||.|||||.||||||||.||.||.||..
RBAM_023640__ 498 AAGACCCGCTGTGGAAGCCGGCGAGAGCCTCGGTTTTCTGCCCGGAGATT 547
BSNT_03777___ 548 TAAAAGAAAAAGTAGATCCTTATTTGCGCCCGCTGTATGACGCTCTCCAT 597
||||.||||||||||||||||||.|||||||||||||||||||.|||||.
RBAM_023640__ 548 TAAAGGAAAAAGTAGATCCTTATCTGCGCCCGCTGTATGACGCGCTCCAC 597
BSNT_03777___ 598 GATGTGCTTGG-GGCAGATCATACAGAACGTCTGATGGAAAGAGGCATCA 646
||||||||.|| .|| ||.|||||.||.|||||.|||||.|||||..|.|
RBAM_023640__ 598 GATGTGCTCGGAAGC-GACCATACGGAGCGTCTTATGGAGAGAGGGGTTA 646
BSNT_03777___ 647 TTGAAATTGCTCCGCTCGCATATATGAGGGGGCGGACGCTCGATGATGCT 696
|.|||||.||.|||||.||.||||||||.|||||||||||.||.||.||.
RBAM_023640__ 647 TCGAAATCGCCCCGCTTGCCTATATGAGAGGGCGGACGCTTGACGACGCG 696
BSNT_03777___ 697 TATGTTATACTTGATGAAGCACAGAATACCACGCCTGCTCAAATGAAAAT 746
|||||.||.|||||||||||.|||||||||||.||.||||||||||||||
RBAM_023640__ 697 TATGTGATTCTTGATGAAGCCCAGAATACCACTCCCGCTCAAATGAAAAT 746
BSNT_03777___ 747 GTTTTTGACGAGACTGGGTTTTGGCTCTAAAATGATCATTACAGGTGACG 796
|||||||||||||.||||||||||||||||||||||||||||.||.||||
RBAM_023640__ 747 GTTTTTGACGAGATTGGGTTTTGGCTCTAAAATGATCATTACGGGCGACG 796
BSNT_03777___ 797 TCAGCCAAATTGATCTGCCGAAAGGCGTCAAATCGGGACTTGCAGTAGCG 846
|.|||||||||||.||||||||||||||||.|||||||||||||||.|||
RBAM_023640__ 797 TAAGCCAAATTGACCTGCCGAAAGGCGTCACATCGGGACTTGCAGTGGCG 846
BSNT_03777___ 847 AAGGAGATGCTGAAAGGA-ATAGACGGCATTTCTATGATTGAGCTAGACC 895
|||||.|||||| ||||| .||.|||||||.||..|||||||.||.||||
RBAM_023640__ 847 AAGGATATGCTG-AAGGACGTAAACGGCATCTCCGTGATTGAACTTGACC 895
BSNT_03777___ 896 AGACAGACGTGGTCAGACATCCGCTTGTTGCGAAAATTATTGAAGCATAC 945
|||||||.||||||||.||||||||||||||.||||||||||||||.||.
RBAM_023640__ 896 AGACAGATGTGGTCAGGCATCCGCTTGTTGCAAAAATTATTGAAGCTTAT 945
BSNT_03777___ 946 GATAAGCAAAATTAA 960
|||||||||||.|||
RBAM_023640__ 946 GATAAGCAAAAGTAA 960
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