Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03776 and RBAM_023630
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:05
# Commandline: needle
# -asequence dna-align/BSNT_03776___yqfF.1.9828.seq
# -bsequence dna-align/RBAM_023630___yqfF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03776___yqfF-RBAM_023630___yqfF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03776___yqfF-RBAM_023630___yqfF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03776___yqfF
# 2: RBAM_023630___yqfF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2161
# Identity: 1709/2161 (79.1%)
# Similarity: 1709/2161 (79.1%)
# Gaps: 53/2161 ( 2.5%)
# Score: 6762.5
#
#
#=======================================
BSNT_03776___ 1 GTGTTGAAAAAGAAGGCTAAGACCAAAAGCAGCTCAAAAAAATGGA---- 46
|||||||||||||..|||..||||||| ||.| .|||
RBAM_023630__ 1 ---TTGAAAAAGAAGGGAAAGGGCAAAAGC-GCCC-------GGGAACGG 39
BSNT_03776___ 47 ----GCAGTTTTAAAAATGCCCGCTCCATGCATGTACTGCTGTATCTTCT 92
|||||||.|.|.||||||||||....|||||.||||||||.||.||
RBAM_023630__ 40 TTCCGCAGTTTCAGACATGCCCGCTCAGCCCATGTGCTGCTGTACCTGCT 89
BSNT_03776___ 93 GCTGGCTACCATTATGTTTGCTTTGCTCTTTATACATGTTAAGCCGGAAA 142
|||..|..|.||.|||||||.||||||||||||.|||||.||.||.|||.
RBAM_023630__ 90 GCTTTCAGCGATCATGTTTGGTTTGCTCTTTATTCATGTAAAACCTGAAT 139
BSNT_03776___ 143 CACTTGATTTAGACCTGTTTTCAGTTAGCGACAAGACCATTTACGCTCCG 192
|||||.||||.||..|||||.||||.||.||.|||||.||||||||.||.
RBAM_023630__ 140 CACTTAATTTGGATTTGTTTGCAGTCAGTGATAAGACGATTTACGCGCCC 189
BSNT_03776___ 193 GCAACCGTAGAAGATCAAAAAGCCACAGAGGAA---AAAAAGCAAGCCGC 239
||.||.||.||||||||..|.||.|| |||| |||||.||.||.||
RBAM_023630__ 190 GCCACAGTGGAAGATCAGCAGGCGAC---GGAATCGAAAAAACAGGCGGC 236
BSNT_03776___ 240 TGAGGACGCGGTTGAAGATCAATATACATTAAAAAAAGAATATACAGACA 289
.||.||.|||||.|||||||||||.||..|.|||||||..|||||.||||
RBAM_023630__ 237 CGAAGATGCGGTGGAAGATCAATACACTCTGAAAAAAGGCTATACCGACA 286
BSNT_03776___ 290 ATCGGATTGACCTTGTGTCATCAATATTCGACAGTATTAGTGAAGTGAAA 339
|||||.|||||||..|..|.||.||.||.|||||.||..|.|||||||||
RBAM_023630__ 287 ATCGGCTTGACCTGATCACTTCCATTTTTGACAGCATCGGCGAAGTGAAA 336
BSNT_03776___ 340 AAATCAT-CAGAAGAAGGCAGTAAATCACCATCGGAAAAATCAATGGTCA 388
||| .|| |.|||.|||.||..||||||||.||||||||||||.||||.|
RBAM_023630__ 337 AAA-GATGCGGAAAAAGACAAAAAATCACCTTCGGAAAAATCACTGGTAA 385
BSNT_03776___ 389 AATCTGTAAAGGACAAATTGACATCA-GATGTGAATGATTCTATATCGGA 437
||||.||.||..||||..||||| || |||||.|||||.||..|.|||||
RBAM_023630__ 386 AATCGGTGAAAAACAAGCTGACA-CAGGATGTCAATGAATCCGTCTCGGA 434
BSNT_03776___ 438 GGATTCCATCAAGACATTGCTGAAAGCAGACAGTGAAGACTTTTCTTTTG 487
.|||.||||.||..|..|.||..|.|||.|||.||||||.||.||.||||
RBAM_023630__ 435 AGATGCCATTAAATCGCTTCTCCATGCAAACAATGAAGATTTCTCATTTG 484
BSNT_03776___ 488 TCAGAGATACGGTCATTACCGCGGTAAATACGGTCATGAGCAGTGAAATC 537
|.||.|||.|.||||||||||||||.||||||||.||||||||||||||.
RBAM_023630__ 485 TGAGGGATTCCGTCATTACCGCGGTGAATACGGTGATGAGCAGTGAAATT 534
BSNT_03776___ 538 CCCTCGGATAAACTATCTGATGCAAAGGATAAGGTAGAAAAAGAGCTAAA 587
||.||.||.||.||..||||.||.|||||||||||.|.|||||||||.||
RBAM_023630__ 535 CCTTCTGAAAAGCTTGCTGAAGCGAAGGATAAGGTCGCAAAAGAGCTGAA 584
BSNT_03776___ 588 GAGCAATTCTATTCCGTCTAAATACTTGGGAGCCGCGACAGAAATCGG-- 635
.|||..||||.|.|||||.|||||.||.|..||.|||||.||||||||
RBAM_023630__ 585 AAGCGCTTCTGTGCCGTCAAAATATTTAGCGGCTGCGACTGAAATCGGAA 634
BSNT_03776___ 636 -----GCGTTTTGCTATTATTCCGAATTACGTCTTCGATCCGAAAGCAAC 680
||| .|.||.|||||||||||.||.|||||||||||.||
RBAM_023630__ 635 AATACGCG-------GTCATCCCGAATTACGTATTTGATCCGAAAGCGAC 677
BSNT_03776___ 681 AGAGGCAAAACGGCAGGAAGCCTCAGATAATGTCCAGCAGGTTCAAATCA 730
.||.|.||||||.||||||||.|||||.|..|||||||.|||.||.||||
RBAM_023630__ 678 GGATGAAAAACGCCAGGAAGCGTCAGACAGCGTCCAGCCGGTACAGATCA 727
BSNT_03776___ 731 AACAGGGACAAGTGCTCGTGGAAGAAAATGACCTCATTGATCGGGAAGTG 780
||||||||||.||.|||||||||||.|||||.||.|||||.|||||||||
RBAM_023630__ 728 AACAGGGACAGGTTCTCGTGGAAGAGAATGATCTGATTGACCGGGAAGTG 777
BSNT_03776___ 781 TACAGAAAACTTGAGCTGACCGGGT-TATTAAATAACTCAAATCTCTTTA 829
|||||.||.|||||.|||| ||||| |.||.|||||.||.||.||.||.|
RBAM_023630__ 778 TACAGGAAGCTTGAACTGA-CGGGTCTTTTGAATAATTCCAACCTGTTAA 826
BSNT_03776___ 830 AACCGATCAGCGGGCTATTGATTATGATCGGACTTTTCATTGCAACACTT 879
|||||||||||||.||..|..|.||||||||.||.||.|||||.||.|||
RBAM_023630__ 827 AACCGATCAGCGGTCTCCTTCTGATGATCGGCCTGTTTATTGCCACGCTT 876
BSNT_03776___ 880 GTATATTATTTTGAAAAACAGAAACAAAATCTGAAGTTTAAAAACCAATC 929
||.||.||||||||.||||||.|.||..|.||.|||.|.|||||..||||
RBAM_023630__ 877 GTCTACTATTTTGAGAAACAGCAGCAGGAGCTTAAGCTGAAAAATAAATC 926
BSNT_03776___ 930 CATTCTGTTATTCTCCATAATCACAACACTTTTGCTTGTGATCATGGAGG 979
..||.||.|.||.||.||.||.|||||.|||.|.||.||.||.|||||.|
RBAM_023630__ 927 TCTTTTGCTGTTTTCTATCATTACAACGCTTATTCTCGTCATTATGGAAG 976
BSNT_03776___ 980 TTGTCAGTTTGTTTCAGAAGATGGAGTATAATAATATCGGCTATCTGGTC 1029
|.||||||.|.|||||||||||.||.||.|..||||||||||||||.||.
RBAM_023630__ 977 TCGTCAGTCTCTTTCAGAAGATTGAATACACCAATATCGGCTATCTTGTG 1026
BSNT_03776___ 1030 CCCATTGCGGCCGGCGCCATCTTAATCAAACTGCTGATGAATGAACGCAT 1079
||.||.||.|||||.||.||.|||||||..||||||.|.||||||.|..|
RBAM_023630__ 1027 CCGATCGCCGCCGGTGCGATTTTAATCAGGCTGCTGCTCAATGAAAGGCT 1076
BSNT_03776___ 1080 TGCCATTTTGGGAAGTATCATTCTTGCGATTTGCGGAAGTATGATGTTTA 1129
.||||||||.|||||.||||||||.|||||.|||||.|||||||||||||
RBAM_023630__ 1077 CGCCATTTTAGGAAGCATCATTCTGGCGATCTGCGGCAGTATGATGTTTA 1126
BSNT_03776___ 1130 ATCAGGGTGTGACAGGAACATTCAATTATGTCATAGGGATTTATTATTTG 1179
|||||||||||||.||||||||.|||||.|||||.||.|||||.|||||.
RBAM_023630__ 1127 ATCAGGGTGTGACGGGAACATTTAATTACGTCATCGGCATTTACTATTTA 1176
BSNT_03776___ 1180 ATCAGCGGCATTTCAGGTGTATTATTTTTAGGAAAACACAATGCAAGATC 1229
||||||.||||||||||..|..|.|||||.||||||||.|||||.||.||
RBAM_023630__ 1177 ATCAGCAGCATTTCAGGCATTCTGTTTTTGGGAAAACATAATGCGAGGTC 1226
BSNT_03776___ 1230 AAAGATTTTGCAGACCGGACTTTTCGTGGCGTTTATTAATATGGTTGTCG 1279
|||.||.||||||||.|||||.|||||..|.||||||||||||.||.|||
RBAM_023630__ 1227 AAAAATATTGCAGACGGGACTGTTCGTCTCATTTATTAATATGATTATCG 1276
BSNT_03776___ 1280 TTCTATC-CTTATTATTGATCCAGAACACTGCGCTGT---CGGGTCTTGA 1325
|.||.|| ||| |||||.||.||.||.||.||||||| ||| ||||
RBAM_023630__ 1277 TGCTGTCGCTT-TTATTAATACAAAATACGGCGCTGTCACCGG---TTGA 1322
BSNT_03776___ 1326 AATCGGCACGTTAATGCTCATGGGGGTTGTGTCGGGGTTTGCTTCATCTG 1375
||||||.|||.|.|||||.||||||||.||.|||||..||||||||||.|
RBAM_023630__ 1323 AATCGGAACGCTGATGCTGATGGGGGTCGTCTCGGGACTTGCTTCATCCG 1372
BSNT_03776___ 1376 TATTGATCATCGGCCTGATGCCGTTTTTTGAGACGGGCTTTGGCATTTTA 1425
|.|||||.|||||.|||||||||||||||||||||||.||.||||||.|.
RBAM_023630__ 1373 TTTTGATTATCGGTCTGATGCCGTTTTTTGAGACGGGATTCGGCATTCTT 1422
BSNT_03776___ 1426 TCCACCATGAGGCTGCTCGAGCTGTCTAATCCTAACCATCCGCTATTGCG 1475
||.||.|||||||||.|.||.|||||||||||.||.|||||.||..|.||
RBAM_023630__ 1423 TCAACAATGAGGCTGATTGAACTGTCTAATCCGAATCATCCCCTGCTTCG 1472
BSNT_03776___ 1476 CAAAATACTGACAGAAACACCAGGTACATATCATCACAGTGTAATGGTTG 1525
.||.||..|.||.||||||||.|||||||||||||||||.||.|||||.|
RBAM_023630__ 1473 AAAGATTTTAACGGAAACACCCGGTACATATCATCACAGCGTCATGGTGG 1522
BSNT_03776___ 1526 CCAATTTATCAGAGGCAGCCTGTGAAGCGGTTGGGGCTAATGGTTTGCTT 1575
|.|||.|.||.||.||.||.||||||||.||.|||||.||.|||.|..|.
RBAM_023630__ 1523 CAAATCTGTCGGAAGCGGCTTGTGAAGCCGTAGGGGCAAACGGTCTTTTA 1572
BSNT_03776___ 1576 GCAAGAGTCGGCGCATATTATCACGATCTCGGAAAAACAAAGCGCCCGCA 1625
|||.|.|||||.||.|||||||||||||||||.|||||.||.||.|||||
RBAM_023630__ 1573 GCACGGGTCGGAGCGTATTATCACGATCTCGGCAAAACGAAACGTCCGCA 1622
BSNT_03776___ 1626 ATATTTTATTGAAAACCAAATGAATATTGACAATCCGCATGACAAGCTGT 1675
|||||||||||||||.||.||||||||.||.|||||||||||||||||||
RBAM_023630__ 1623 ATATTTTATTGAAAATCAGATGAATATGGATAATCCGCATGACAAGCTGT 1672
BSNT_03776___ 1676 CACCTCAGTTGAGTAAAAATATTATTATCTCGCATACGACAGACGGTGCG 1725
|.||.|||.|.|||||||||||.||||||.|.||||||||||||||||||
RBAM_023630__ 1673 CTCCGCAGCTCAGTAAAAATATCATTATCGCACATACGACAGACGGTGCG 1722
BSNT_03776___ 1726 AATATGCTGAGAAGCTATAAATTTCCGAAAGAGCTTGTCGATATTGCTGA 1775
||||||||.|||||||||||.|||||||||||||||||.|||||.||.||
RBAM_023630__ 1723 AATATGCTCAGAAGCTATAAGTTTCCGAAAGAGCTTGTGGATATCGCGGA 1772
BSNT_03776___ 1776 GCAGCATCATGGAACCTCGCTTTTAAAGTTTTTTTACTATAAAGCGAAGG 1825
|||||||||.|||||.||.||||||||.||.|||||.|||||||||||.|
RBAM_023630__ 1773 GCAGCATCACGGAACGTCCCTTTTAAAATTCTTTTATTATAAAGCGAAAG 1822
BSNT_03776___ 1826 AAAAAGGCGACCAGATTACAGAGGAAGAGTTCCGTTATCCGGGGCCGAAG 1875
||||.||||||||||||||||||.||||||||||.||.||||||||||||
RBAM_023630__ 1823 AAAAGGGCGACCAGATTACAGAGAAAGAGTTCCGCTACCCGGGGCCGAAG 1872
BSNT_03776___ 1876 CCGCAGTCAAAGGAAGCCGCAATTATATCAGTGGCCGACAGTGTTGAAGC 1925
|||||.||.||.|||||.||.|||||.||||||||||||||.||||||||
RBAM_023630__ 1873 CCGCAATCGAAAGAAGCGGCTATTATCTCAGTGGCCGACAGCGTTGAAGC 1922
BSNT_03776___ 1926 GGCCGTCAGATCCATGCACAATCCAAATCCTGAACGAATTGAAAAGCTTG 1975
.||||||.|.||||||||.|||||.|||||.||.||.||.|||||.||.|
RBAM_023630__ 1923 CGCCGTCCGTTCCATGCATAATCCCAATCCCGAGCGGATCGAAAAACTGG 1972
BSNT_03776___ 1976 TCCGGGGTATTATATCCGATAAGCTTCAGGACGGACAGTTCAGTGAATGC 2025
|.|||||.|||||||||||||||||||||||||||||.|||...|||||.
RBAM_023630__ 1973 TGCGGGGAATTATATCCGATAAGCTTCAGGACGGACAATTCTCAGAATGT 2022
BSNT_03776___ 2026 GATCTGACATTTAAAGAGCTGGATACAATCGCAAAAACGCTCTGTGCAAC 2075
||.||.|||||...|||.||||||||.|||||||||||.||.|||||.||
RBAM_023630__ 2023 GACCTCACATTCCGAGAACTGGATACGATCGCAAAAACACTATGTGCGAC 2072
BSNT_03776___ 2076 ATTAAAAGGAATTTTCCACTCCCGGATTGAATATCCGGAGGCTACTAAGA 2125
.||||||||||||||||||||||||||||||||||||||||||||.||||
RBAM_023630__ 2073 TTTAAAAGGAATTTTCCACTCCCGGATTGAATATCCGGAGGCTACGAAGA 2122
BSNT_03776___ 2126 AGGTGAAATAG 2136
||||||||||.
RBAM_023630__ 2123 AGGTGAAATAA 2133
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