Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03776 and RBAM_023630

See Amino acid alignment / Visit BSNT_03776 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:05
# Commandline: needle
#    -asequence dna-align/BSNT_03776___yqfF.1.9828.seq
#    -bsequence dna-align/RBAM_023630___yqfF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03776___yqfF-RBAM_023630___yqfF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03776___yqfF-RBAM_023630___yqfF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03776___yqfF
# 2: RBAM_023630___yqfF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2161
# Identity:    1709/2161 (79.1%)
# Similarity:  1709/2161 (79.1%)
# Gaps:          53/2161 ( 2.5%)
# Score: 6762.5
# 
#
#=======================================

BSNT_03776___      1 GTGTTGAAAAAGAAGGCTAAGACCAAAAGCAGCTCAAAAAAATGGA----     46
                        |||||||||||||..|||..||||||| ||.|       .|||    
RBAM_023630__      1 ---TTGAAAAAGAAGGGAAAGGGCAAAAGC-GCCC-------GGGAACGG     39

BSNT_03776___     47 ----GCAGTTTTAAAAATGCCCGCTCCATGCATGTACTGCTGTATCTTCT     92
                         |||||||.|.|.||||||||||....|||||.||||||||.||.||
RBAM_023630__     40 TTCCGCAGTTTCAGACATGCCCGCTCAGCCCATGTGCTGCTGTACCTGCT     89

BSNT_03776___     93 GCTGGCTACCATTATGTTTGCTTTGCTCTTTATACATGTTAAGCCGGAAA    142
                     |||..|..|.||.|||||||.||||||||||||.|||||.||.||.|||.
RBAM_023630__     90 GCTTTCAGCGATCATGTTTGGTTTGCTCTTTATTCATGTAAAACCTGAAT    139

BSNT_03776___    143 CACTTGATTTAGACCTGTTTTCAGTTAGCGACAAGACCATTTACGCTCCG    192
                     |||||.||||.||..|||||.||||.||.||.|||||.||||||||.||.
RBAM_023630__    140 CACTTAATTTGGATTTGTTTGCAGTCAGTGATAAGACGATTTACGCGCCC    189

BSNT_03776___    193 GCAACCGTAGAAGATCAAAAAGCCACAGAGGAA---AAAAAGCAAGCCGC    239
                     ||.||.||.||||||||..|.||.||   ||||   |||||.||.||.||
RBAM_023630__    190 GCCACAGTGGAAGATCAGCAGGCGAC---GGAATCGAAAAAACAGGCGGC    236

BSNT_03776___    240 TGAGGACGCGGTTGAAGATCAATATACATTAAAAAAAGAATATACAGACA    289
                     .||.||.|||||.|||||||||||.||..|.|||||||..|||||.||||
RBAM_023630__    237 CGAAGATGCGGTGGAAGATCAATACACTCTGAAAAAAGGCTATACCGACA    286

BSNT_03776___    290 ATCGGATTGACCTTGTGTCATCAATATTCGACAGTATTAGTGAAGTGAAA    339
                     |||||.|||||||..|..|.||.||.||.|||||.||..|.|||||||||
RBAM_023630__    287 ATCGGCTTGACCTGATCACTTCCATTTTTGACAGCATCGGCGAAGTGAAA    336

BSNT_03776___    340 AAATCAT-CAGAAGAAGGCAGTAAATCACCATCGGAAAAATCAATGGTCA    388
                     ||| .|| |.|||.|||.||..||||||||.||||||||||||.||||.|
RBAM_023630__    337 AAA-GATGCGGAAAAAGACAAAAAATCACCTTCGGAAAAATCACTGGTAA    385

BSNT_03776___    389 AATCTGTAAAGGACAAATTGACATCA-GATGTGAATGATTCTATATCGGA    437
                     ||||.||.||..||||..||||| || |||||.|||||.||..|.|||||
RBAM_023630__    386 AATCGGTGAAAAACAAGCTGACA-CAGGATGTCAATGAATCCGTCTCGGA    434

BSNT_03776___    438 GGATTCCATCAAGACATTGCTGAAAGCAGACAGTGAAGACTTTTCTTTTG    487
                     .|||.||||.||..|..|.||..|.|||.|||.||||||.||.||.||||
RBAM_023630__    435 AGATGCCATTAAATCGCTTCTCCATGCAAACAATGAAGATTTCTCATTTG    484

BSNT_03776___    488 TCAGAGATACGGTCATTACCGCGGTAAATACGGTCATGAGCAGTGAAATC    537
                     |.||.|||.|.||||||||||||||.||||||||.||||||||||||||.
RBAM_023630__    485 TGAGGGATTCCGTCATTACCGCGGTGAATACGGTGATGAGCAGTGAAATT    534

BSNT_03776___    538 CCCTCGGATAAACTATCTGATGCAAAGGATAAGGTAGAAAAAGAGCTAAA    587
                     ||.||.||.||.||..||||.||.|||||||||||.|.|||||||||.||
RBAM_023630__    535 CCTTCTGAAAAGCTTGCTGAAGCGAAGGATAAGGTCGCAAAAGAGCTGAA    584

BSNT_03776___    588 GAGCAATTCTATTCCGTCTAAATACTTGGGAGCCGCGACAGAAATCGG--    635
                     .|||..||||.|.|||||.|||||.||.|..||.|||||.||||||||  
RBAM_023630__    585 AAGCGCTTCTGTGCCGTCAAAATATTTAGCGGCTGCGACTGAAATCGGAA    634

BSNT_03776___    636 -----GCGTTTTGCTATTATTCCGAATTACGTCTTCGATCCGAAAGCAAC    680
                          |||       .|.||.|||||||||||.||.|||||||||||.||
RBAM_023630__    635 AATACGCG-------GTCATCCCGAATTACGTATTTGATCCGAAAGCGAC    677

BSNT_03776___    681 AGAGGCAAAACGGCAGGAAGCCTCAGATAATGTCCAGCAGGTTCAAATCA    730
                     .||.|.||||||.||||||||.|||||.|..|||||||.|||.||.||||
RBAM_023630__    678 GGATGAAAAACGCCAGGAAGCGTCAGACAGCGTCCAGCCGGTACAGATCA    727

BSNT_03776___    731 AACAGGGACAAGTGCTCGTGGAAGAAAATGACCTCATTGATCGGGAAGTG    780
                     ||||||||||.||.|||||||||||.|||||.||.|||||.|||||||||
RBAM_023630__    728 AACAGGGACAGGTTCTCGTGGAAGAGAATGATCTGATTGACCGGGAAGTG    777

BSNT_03776___    781 TACAGAAAACTTGAGCTGACCGGGT-TATTAAATAACTCAAATCTCTTTA    829
                     |||||.||.|||||.|||| ||||| |.||.|||||.||.||.||.||.|
RBAM_023630__    778 TACAGGAAGCTTGAACTGA-CGGGTCTTTTGAATAATTCCAACCTGTTAA    826

BSNT_03776___    830 AACCGATCAGCGGGCTATTGATTATGATCGGACTTTTCATTGCAACACTT    879
                     |||||||||||||.||..|..|.||||||||.||.||.|||||.||.|||
RBAM_023630__    827 AACCGATCAGCGGTCTCCTTCTGATGATCGGCCTGTTTATTGCCACGCTT    876

BSNT_03776___    880 GTATATTATTTTGAAAAACAGAAACAAAATCTGAAGTTTAAAAACCAATC    929
                     ||.||.||||||||.||||||.|.||..|.||.|||.|.|||||..||||
RBAM_023630__    877 GTCTACTATTTTGAGAAACAGCAGCAGGAGCTTAAGCTGAAAAATAAATC    926

BSNT_03776___    930 CATTCTGTTATTCTCCATAATCACAACACTTTTGCTTGTGATCATGGAGG    979
                     ..||.||.|.||.||.||.||.|||||.|||.|.||.||.||.|||||.|
RBAM_023630__    927 TCTTTTGCTGTTTTCTATCATTACAACGCTTATTCTCGTCATTATGGAAG    976

BSNT_03776___    980 TTGTCAGTTTGTTTCAGAAGATGGAGTATAATAATATCGGCTATCTGGTC   1029
                     |.||||||.|.|||||||||||.||.||.|..||||||||||||||.||.
RBAM_023630__    977 TCGTCAGTCTCTTTCAGAAGATTGAATACACCAATATCGGCTATCTTGTG   1026

BSNT_03776___   1030 CCCATTGCGGCCGGCGCCATCTTAATCAAACTGCTGATGAATGAACGCAT   1079
                     ||.||.||.|||||.||.||.|||||||..||||||.|.||||||.|..|
RBAM_023630__   1027 CCGATCGCCGCCGGTGCGATTTTAATCAGGCTGCTGCTCAATGAAAGGCT   1076

BSNT_03776___   1080 TGCCATTTTGGGAAGTATCATTCTTGCGATTTGCGGAAGTATGATGTTTA   1129
                     .||||||||.|||||.||||||||.|||||.|||||.|||||||||||||
RBAM_023630__   1077 CGCCATTTTAGGAAGCATCATTCTGGCGATCTGCGGCAGTATGATGTTTA   1126

BSNT_03776___   1130 ATCAGGGTGTGACAGGAACATTCAATTATGTCATAGGGATTTATTATTTG   1179
                     |||||||||||||.||||||||.|||||.|||||.||.|||||.|||||.
RBAM_023630__   1127 ATCAGGGTGTGACGGGAACATTTAATTACGTCATCGGCATTTACTATTTA   1176

BSNT_03776___   1180 ATCAGCGGCATTTCAGGTGTATTATTTTTAGGAAAACACAATGCAAGATC   1229
                     ||||||.||||||||||..|..|.|||||.||||||||.|||||.||.||
RBAM_023630__   1177 ATCAGCAGCATTTCAGGCATTCTGTTTTTGGGAAAACATAATGCGAGGTC   1226

BSNT_03776___   1230 AAAGATTTTGCAGACCGGACTTTTCGTGGCGTTTATTAATATGGTTGTCG   1279
                     |||.||.||||||||.|||||.|||||..|.||||||||||||.||.|||
RBAM_023630__   1227 AAAAATATTGCAGACGGGACTGTTCGTCTCATTTATTAATATGATTATCG   1276

BSNT_03776___   1280 TTCTATC-CTTATTATTGATCCAGAACACTGCGCTGT---CGGGTCTTGA   1325
                     |.||.|| ||| |||||.||.||.||.||.|||||||   |||   ||||
RBAM_023630__   1277 TGCTGTCGCTT-TTATTAATACAAAATACGGCGCTGTCACCGG---TTGA   1322

BSNT_03776___   1326 AATCGGCACGTTAATGCTCATGGGGGTTGTGTCGGGGTTTGCTTCATCTG   1375
                     ||||||.|||.|.|||||.||||||||.||.|||||..||||||||||.|
RBAM_023630__   1323 AATCGGAACGCTGATGCTGATGGGGGTCGTCTCGGGACTTGCTTCATCCG   1372

BSNT_03776___   1376 TATTGATCATCGGCCTGATGCCGTTTTTTGAGACGGGCTTTGGCATTTTA   1425
                     |.|||||.|||||.|||||||||||||||||||||||.||.||||||.|.
RBAM_023630__   1373 TTTTGATTATCGGTCTGATGCCGTTTTTTGAGACGGGATTCGGCATTCTT   1422

BSNT_03776___   1426 TCCACCATGAGGCTGCTCGAGCTGTCTAATCCTAACCATCCGCTATTGCG   1475
                     ||.||.|||||||||.|.||.|||||||||||.||.|||||.||..|.||
RBAM_023630__   1423 TCAACAATGAGGCTGATTGAACTGTCTAATCCGAATCATCCCCTGCTTCG   1472

BSNT_03776___   1476 CAAAATACTGACAGAAACACCAGGTACATATCATCACAGTGTAATGGTTG   1525
                     .||.||..|.||.||||||||.|||||||||||||||||.||.|||||.|
RBAM_023630__   1473 AAAGATTTTAACGGAAACACCCGGTACATATCATCACAGCGTCATGGTGG   1522

BSNT_03776___   1526 CCAATTTATCAGAGGCAGCCTGTGAAGCGGTTGGGGCTAATGGTTTGCTT   1575
                     |.|||.|.||.||.||.||.||||||||.||.|||||.||.|||.|..|.
RBAM_023630__   1523 CAAATCTGTCGGAAGCGGCTTGTGAAGCCGTAGGGGCAAACGGTCTTTTA   1572

BSNT_03776___   1576 GCAAGAGTCGGCGCATATTATCACGATCTCGGAAAAACAAAGCGCCCGCA   1625
                     |||.|.|||||.||.|||||||||||||||||.|||||.||.||.|||||
RBAM_023630__   1573 GCACGGGTCGGAGCGTATTATCACGATCTCGGCAAAACGAAACGTCCGCA   1622

BSNT_03776___   1626 ATATTTTATTGAAAACCAAATGAATATTGACAATCCGCATGACAAGCTGT   1675
                     |||||||||||||||.||.||||||||.||.|||||||||||||||||||
RBAM_023630__   1623 ATATTTTATTGAAAATCAGATGAATATGGATAATCCGCATGACAAGCTGT   1672

BSNT_03776___   1676 CACCTCAGTTGAGTAAAAATATTATTATCTCGCATACGACAGACGGTGCG   1725
                     |.||.|||.|.|||||||||||.||||||.|.||||||||||||||||||
RBAM_023630__   1673 CTCCGCAGCTCAGTAAAAATATCATTATCGCACATACGACAGACGGTGCG   1722

BSNT_03776___   1726 AATATGCTGAGAAGCTATAAATTTCCGAAAGAGCTTGTCGATATTGCTGA   1775
                     ||||||||.|||||||||||.|||||||||||||||||.|||||.||.||
RBAM_023630__   1723 AATATGCTCAGAAGCTATAAGTTTCCGAAAGAGCTTGTGGATATCGCGGA   1772

BSNT_03776___   1776 GCAGCATCATGGAACCTCGCTTTTAAAGTTTTTTTACTATAAAGCGAAGG   1825
                     |||||||||.|||||.||.||||||||.||.|||||.|||||||||||.|
RBAM_023630__   1773 GCAGCATCACGGAACGTCCCTTTTAAAATTCTTTTATTATAAAGCGAAAG   1822

BSNT_03776___   1826 AAAAAGGCGACCAGATTACAGAGGAAGAGTTCCGTTATCCGGGGCCGAAG   1875
                     ||||.||||||||||||||||||.||||||||||.||.||||||||||||
RBAM_023630__   1823 AAAAGGGCGACCAGATTACAGAGAAAGAGTTCCGCTACCCGGGGCCGAAG   1872

BSNT_03776___   1876 CCGCAGTCAAAGGAAGCCGCAATTATATCAGTGGCCGACAGTGTTGAAGC   1925
                     |||||.||.||.|||||.||.|||||.||||||||||||||.||||||||
RBAM_023630__   1873 CCGCAATCGAAAGAAGCGGCTATTATCTCAGTGGCCGACAGCGTTGAAGC   1922

BSNT_03776___   1926 GGCCGTCAGATCCATGCACAATCCAAATCCTGAACGAATTGAAAAGCTTG   1975
                     .||||||.|.||||||||.|||||.|||||.||.||.||.|||||.||.|
RBAM_023630__   1923 CGCCGTCCGTTCCATGCATAATCCCAATCCCGAGCGGATCGAAAAACTGG   1972

BSNT_03776___   1976 TCCGGGGTATTATATCCGATAAGCTTCAGGACGGACAGTTCAGTGAATGC   2025
                     |.|||||.|||||||||||||||||||||||||||||.|||...|||||.
RBAM_023630__   1973 TGCGGGGAATTATATCCGATAAGCTTCAGGACGGACAATTCTCAGAATGT   2022

BSNT_03776___   2026 GATCTGACATTTAAAGAGCTGGATACAATCGCAAAAACGCTCTGTGCAAC   2075
                     ||.||.|||||...|||.||||||||.|||||||||||.||.|||||.||
RBAM_023630__   2023 GACCTCACATTCCGAGAACTGGATACGATCGCAAAAACACTATGTGCGAC   2072

BSNT_03776___   2076 ATTAAAAGGAATTTTCCACTCCCGGATTGAATATCCGGAGGCTACTAAGA   2125
                     .||||||||||||||||||||||||||||||||||||||||||||.||||
RBAM_023630__   2073 TTTAAAAGGAATTTTCCACTCCCGGATTGAATATCCGGAGGCTACGAAGA   2122

BSNT_03776___   2126 AGGTGAAATAG   2136
                     ||||||||||.
RBAM_023630__   2123 AGGTGAAATAA   2133


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