Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03733 and RBAM_023330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:01
# Commandline: needle
# -asequence dna-align/BSNT_03733___yqgE.1.9828.seq
# -bsequence dna-align/RBAM_023330___yqgE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03733___yqgE-RBAM_023330___yqgE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03733___yqgE-RBAM_023330___yqgE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03733___yqgE
# 2: RBAM_023330___yqgE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1320
# Identity: 1003/1320 (76.0%)
# Similarity: 1003/1320 (76.0%)
# Gaps: 57/1320 ( 4.3%)
# Score: 3766.0
#
#
#=======================================
BSNT_03733___ 1 ATGAGCAAACTAAAAAAAGTGATAGGCGATGTAGACGTAAACAAAGGGTT 50
|||||||||.||||||||.|.||.|||||..|.||..||||.||||||.|
RBAM_023330__ 1 ATGAGCAAAATAAAAAAAATTATCGGCGACATCGAAATAAATAAAGGGCT 50
BSNT_03733___ 51 ACT-CT-TTCTGCTGACCATTGGCGGGCTTTACTCGCTGGGAATTGCACT 98
.|| || ||.| ||||.||||||||.||||||||..||||.||.||.||
RBAM_023330__ 51 GCTGCTGTTAT--TGACGATTGGCGGCCTTTACTCATTGGGCATCGCGCT 98
BSNT_03733___ 99 GTCCAATACTTTTGTTAATGTGTATCTTTGGAAGCAGTCAGGGAAATTTA 148
|||.|||||.|||||.||.||||||.|.|||||||||||.||.|||||||
RBAM_023330__ 99 GTCAAATACATTTGTCAACGTGTATTTGTGGAAGCAGTCGGGAAAATTTA 148
BSNT_03733___ 149 TTGATTTGGCGATATATAATTTATCCATTGTGACAATGCAGCCGATAACC 198
||||||||||.|||||.|||||.||..|.|||||.|||||||||.|.|||
RBAM_023330__ 149 TTGATTTGGCCATATACAATTTGTCGGTCGTGACGATGCAGCCGGTTACC 198
BSNT_03733___ 199 TTTTATTTGGCTGGACGGTTAGCCAAAAAAATAGACAGGGTATTCATTTT 248
|||....|||||||.|||.|.||.||||||||.||||||||.||.|||.|
RBAM_023330__ 199 TTTCTGCTGGCTGGCCGGCTGGCTAAAAAAATTGACAGGGTGTTTATTCT 248
BSNT_03733___ 249 AAGGTTCGGCGTCATTTTTTTAGCTGCCTTTTATTTAAGTGTGCTTTTAG 298
||||||||||||.||.|||||.||.||.|||||||||||||||||..|.|
RBAM_023330__ 249 AAGGTTCGGCGTTATCTTTTTGGCCGCTTTTTATTTAAGTGTGCTGCTTG 298
BSNT_03733___ 299 CCGGAGAAACGGCGGCCAGCCGCCTCGTGCTAATCGGCGCGGTGCTCGGA 348
||||||||||.|||||...|||.|||||..|.||.||.||.|||||||||
RBAM_023330__ 299 CCGGAGAAACTGCGGCTTCCCGTCTCGTTTTGATAGGGGCCGTGCTCGGA 348
BSNT_03733___ 349 GTGGGCTATGGCTTTTATTGGCTAGCGTTTAACGTACTGACCTTTGAAAT 398
||.||.||.||||||||.|||||.||.|||||.||.|||||.||.|||||
RBAM_023330__ 349 GTTGGATACGGCTTTTACTGGCTGGCTTTTAATGTGCTGACTTTCGAAAT 398
BSNT_03733___ 399 AACAGAGCCGGATACACGAGACTTTTTCAACGGGTTTATGGGCATTCTTT 448
.||.||.|||||.||..||||.|||||.|||||||||.|.||||||.|.|
RBAM_023330__ 399 CACGGAACCGGAAACGAGAGATTTTTTTAACGGGTTTTTAGGCATTTTGT 448
BSNT_03733___ 449 CTTCCTCTGCAGGAATGATCGGCCCGATTGTAGCCGGATTCGTGATCTCA 498
||||.||.||.||.||||||||.||||||||.|||||||..||.||.|||
RBAM_023330__ 449 CTTCATCGGCGGGCATGATCGGTCCGATTGTGGCCGGATATGTCATTTCA 498
BSNT_03733___ 499 AGGCTTGAAAATAATACGGGTTATACAGTGATTTTCAGTCTCTCCCTCAG 548
||.||||||||.|||||||||||||||.|.||||||||.||.||.|||.|
RBAM_023330__ 499 AGACTTGAAAACAATACGGGTTATACAATCATTTTCAGCCTGTCGCTCGG 548
BSNT_03733___ 549 TTTATTTGCCCTGGCTGTCGTGATGAGCTTTTTCTTAAAACGGAGAGAAT 598
.|||||||||||.||.||.||.|||||||||||..|.||.|||||.||.|
RBAM_023330__ 549 CTTATTTGCCCTTGCCGTGGTCATGAGCTTTTTTCTGAAGCGGAGGGAGT 598
BSNT_03733___ 599 CAAAGGGCCGTTTTATGCTGAGCAAAGTATTTGGAGAGCGCCATAGCAAT 648
|.||.|||||.||||||||||..|||||.||||..||||||||.|..|||
RBAM_023330__ 599 CGAAAGGCCGGTTTATGCTGAAAAAAGTTTTTGATGAGCGCCACACGAAT 648
BSNT_03733___ 649 ATGAATTGGCGGAGAATCACGAATGCGCATTTTTTTCAGGGTTTGAGAGA 698
.||||||||||..|.||.||.||.|||||.||||||||.||.||||||||
RBAM_023330__ 649 CTGAATTGGCGCCGGATTACCAACGCGCACTTTTTTCAAGGCTTGAGAGA 698
BSNT_03733___ 699 AGGGATTTTTGTCTTTTTAATCAGTGTGTTTGTATTTATTGAGACAAACA 748
||||||||||||.|||||||||||.||.||||||||.||||.||||||||
RBAM_023330__ 699 AGGGATTTTTGTTTTTTTAATCAGCGTATTTGTATTCATTGCGACAAACA 748
BSNT_03733___ 749 GTGAACTTGCTCTCGGTACATTCGGTCTTGTCAATTCAGCTGTTTCCTTC 798
||||.||.||.|||||.|||||||||||.||||||||.||.|||||.||.
RBAM_023330__ 749 GTGAGCTGGCGCTCGGAACATTCGGTCTCGTCAATTCCGCGGTTTCTTTT 798
BSNT_03733___ 799 TTTGCCTACTACTTTGCATCCAGGCTGATTAAGAAAAAG-GCGAGAAAAA 847
||||||||.||.||||||||.|||||.||.|| |||||| |||.|.||||
RBAM_023330__ 799 TTTGCCTATTATTTTGCATCAAGGCTCATCAA-AAAAAGAGCGCGGAAAA 847
BSNT_03733___ 848 AATCGATTTTGCTGGGCGGACTTATTTTGTATGGCGCGCTGTTTTTGATT 897
|..|||||.|..|.||||||.|.||.|||||.|||||.||||||.|.||.
RBAM_023330__ 848 AGGCGATTCTTATCGGCGGATTGATCTTGTACGGCGCCCTGTTTCTCATA 897
BSNT_03733___ 898 CTGTTCCATATGAGCTTTTCGA----CATTATTAACGTACGGCGTTTTTA 943
.|.|||.|.||||||||..||| |.||.| ||||||.||.||||
RBAM_023330__ 898 ATTTTCAAAATGAGCTTCACGACGCTCCTTTT----GTACGGAGTGTTTA 943
BSNT_03733___ 944 TTGCCATCGGCTATCCTCTGTTGCTTGTGCCATATGTATCACTTACATAT 993
||||.|||||||||||..|..||||.|||||.|||||.||.|||||||||
RBAM_023330__ 944 TTGCGATCGGCTATCCAGTTCTGCTCGTGCCGTATGTCTCGCTTACATAT 993
BSNT_03733___ 994 GATGTGATAGGGAAC--GCGAGGCATGCCAGAAAAGCAAGAATTGAATAT 1041
||||||||||| || |||.|||.||||||||||||.|||||||||||.
RBAM_023330__ 994 GATGTGATAGG--ACGGGCGCGGCTTGCCAGAAAAGCCAGAATTGAATAC 1041
BSNT_03733___ 1042 ATCGTGCTTAGAGAAATGTTCTTGAATGCCGGCAGAATTGTTTCCAT--T 1089
||.|||||.||.||..|.||.||.|||||.|||.|.||.|||||||| |
RBAM_023330__ 1042 ATTGTGCTCAGGGAGTTATTTTTAAATGCGGGCCGGATCGTTTCCATCCT 1091
BSNT_03733___ 1090 TTGTGCTTTCTCCTGAT-----CATGGCCCTTCTGAAAGAGGATGTGGGA 1134
|||| ||.||..|.|| |||.| ||| ||.||..|.|||||.
RBAM_023330__ 1092 TTGT--TTCCTTGTCATCGTTACATTG---TTC--AAGGAAAAAGTGGGG 1134
BSNT_03733___ 1135 ATTCCTTTGTCACTTGCGATATTGGGTATAGGACATCCTTTGATTTATTA 1184
||.||...|.|.||.|.|.|..|.||....||.|||||..||||||||||
RBAM_023330__ 1135 ATACCGGCGGCGCTCGTGCTGCTCGGAGCCGGGCATCCGCTGATTTATTA 1184
BSNT_03733___ 1185 CTTTGTCAAGGATATCCGTTTTAAGGAGAAA---GAAGGGGAAA------ 1225
||||.|.||.||.||| ||| ||...|||||
RBAM_023330__ 1185 CTTTATAAAAGACATC------------AAACTGGATACGGAAACTTCTG 1222
BSNT_03733___ 1226 ATGAAACCAAG--GAAGAAGACGGCCAAAAACGGGTAACAGAACCGACCC 1273
||||||| || |||||||||.|.|||||||.||...|.|||||||...
RBAM_023330__ 1223 ATGAAAC--AGTAGAAGAAGACCGACAAAAACAGGCGGCGGAACCGAATT 1270
BSNT_03733___ 1274 TGTTAAAAGGCGAGAGATAA 1293
|..|||||||.||.||||||
RBAM_023330__ 1271 TTATAAAAGGAGAAAGATAA 1290
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