Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03665 and RBAM_022890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:57
# Commandline: needle
# -asequence dna-align/BSNT_03665___gcvT.1.9828.seq
# -bsequence dna-align/RBAM_022890___gcvT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03665___gcvT-RBAM_022890___gcvT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03665___gcvT-RBAM_022890___gcvT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03665___gcvT
# 2: RBAM_022890___gcvT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1133
# Identity: 824/1133 (72.7%)
# Similarity: 824/1133 (72.7%)
# Gaps: 76/1133 ( 6.7%)
# Score: 2927.5
#
#
#=======================================
BSNT_03665___ 1 ATGCTGAAAAGAACGCCGTTATTTGACCTGTATAAGGAATATGGAGGAAA 50
|||||||||.||||.|||.|.|.||||.|||||||.|||||.||.|||||
RBAM_022890__ 1 ATGCTGAAACGAACACCGCTTTATGACGTGTATAAAGAATACGGCGGAAA 50
BSNT_03665___ 51 AACGATTGATTTCGGAGGTTGGGAGCTTCCTGTTCAATTTTCTTCTATAA 100
||||||||||||.|||||.||||||||.||.|||||||||||||||||.|
RBAM_022890__ 51 AACGATTGATTTTGGAGGATGGGAGCTGCCGGTTCAATTTTCTTCTATTA 100
BSNT_03665___ 101 AAAAAGAACACGAGGCTGTCCGAACTGCAGCCGGTTTGTTTGATGTATCT 150
||.|.||.||.||.||.|||||.||...|||.||..||||||||||.||.
RBAM_022890__ 101 AAGAGGAGCATGAAGCCGTCCGTACAAAAGCGGGCCTGTTTGATGTGTCC 150
BSNT_03665___ 151 CATATGGGAGAAGTCGAAGTGTCAGGGAACGACAGTCTGTCTTTTTTGCA 200
||||||||.|||||||||||.||.||.||.|||...|||||||||.||||
RBAM_022890__ 151 CATATGGGGGAAGTCGAAGTATCCGGTAAAGACGCCCTGTCTTTTCTGCA 200
BSNT_03665___ 201 AAGATTGATGACAAATGATGTTTCCGCGTTAACGCCAGG--CCGTGCTCA 248
||.|.|||||||||||||.|||.|||..||||.|||.|| .||.|||
RBAM_022890__ 201 AAAAATGATGACAAATGACGTTGCCGATTTAAAGCCGGGAAACGCGCT-- 248
BSNT_03665___ 249 ATATACAGCGATGTGTTACCCGGATGGCGGAACCGTCGATGATTTGCTTA 298
.|||||.||.||||||||.||.||.|||||.||.||||||||.|||||.|
RBAM_022890__ 249 TTATACCGCCATGTGTTATCCTGACGGCGGTACGGTCGATGACTTGCTGA 298
BSNT_03665___ 299 TCTATCA-AAAAGAAGAGAACCGCTATCTGCTTGTCATTAATGCTTCTAA 347
||||||| ||||| .||||.|.||||||||||.||.|||||.||.|||||
RBAM_022890__ 299 TCTATCAGAAAAG-CGAGAGCTGCTATCTGCTCGTGATTAACGCGTCTAA 347
BSNT_03665___ 348 TATAGATAAAGACTTGGCTTGGATGAAAGAACATGCAGCAGGTGATGTAC 397
|||.||.||||||.|.||||||.|||..||||||.|.|.|||.||.|| |
RBAM_022890__ 348 TATTGAAAAAGACATCGCTTGGCTGACGGAACATACGGAAGGCGACGT-C 396
BSNT_03665___ 398 AGATTGAC-AACCAGTCAGA-------TCAAATCGCGCT-CTTGGCTGTA 438
|...|||| ||.|||||.|| ||| || ||| ||.||.
RBAM_022890__ 397 ACGCTGACGAATCAGTCTGACGGGATTTCA-------CTGCTT-GCCGTT 438
BSNT_03665___ 439 CAGGGACCGAAAGCAGAAGCGG-TCTTAAAAAATCTGACAG-ATGCAGAT 486
|||||.|||||.||..|..||| |||| ...||.|||||.| ||| .|||
RBAM_022890__ 439 CAGGGGCCGAATGCTCAGTCGGTTCTT-GCGAAGCTGACTGAATG-TGAT 486
BSNT_03665___ 487 GTGTCTGCATTAAAGCCGTTTGCGTTTATTGATGAAGCCGATATCAGCGG 536
.||||..|.||||||||||||.|.|||||||||.|.||.||..|...|||
RBAM_022890__ 487 TTGTCCTCCTTAAAGCCGTTTACATTTATTGATAAGGCGGACGTTGCCGG 536
BSNT_03665___ 537 CCGCAAAGCACTTATTTCACGCACTGGCTATACGGGAGAAGACGGGTATG 586
.|||.|||..||..|||||.|.||.||||||||.||.||||||||.|.||
RBAM_022890__ 537 ACGCCAAGTCCTGCTTTCAAGAACAGGCTATACCGGTGAAGACGGATTTG 586
BSNT_03665___ 587 AAATTTACTGCCGCAGTGATGATGCTATGCA--TATTTGGAAAAAAATCA 634
|..|.||.|||||||.|||.|||||..|.|| ||||| ||..|.||..
RBAM_022890__ 587 AGTTATATTGCCGCAATGAAGATGCGGTTCATCTATTT--AAGGAGATAC 634
BSNT_03665___ 635 TCGATGCAG-GGGA-TGCAT-ACGGATTGATTCCATGCGGTCTCGGTGCA 681
| ||||| |||| .|||| |.||..|..||||.|||||||||||.||.
RBAM_022890__ 635 T---TGCAGCGGGAGAGCATGAAGGCCTCGTTCCGTGCGGTCTCGGCGCC 681
BSNT_03665___ 682 CGTGATACACTCCGGTTTGAAGCGAAGCTCCCGCTCTACGGTCAGGAGCT 731
||||||||.||..|.||||||||||||||..|..|.|||||||||||..|
RBAM_022890__ 682 CGTGATACGCTGAGATTTGAAGCGAAGCTTGCTTTATACGGTCAGGAATT 731
BSNT_03665___ 732 GACCCGGGATATTACACCGATTGAAGCAGGTATAGGCTTTGCTGTAAAGC 781
|||....||||||||||||||||||||.||.||.||.|||||.||.||.|
RBAM_022890__ 732 GACGAAAGATATTACACCGATTGAAGCCGGAATCGGATTTGCCGTGAAAC 781
BSNT_03665___ 782 ACAAAAAAGAGTCTGACTTTTTCGGTAAGTCAGTATTGAGTGAACAAAAA 831
||||.|||||.||.||.||||||||.||.|||||||||.|.|||||.|||
RBAM_022890__ 782 ACAAGAAAGATTCCGATTTTTTCGGGAAATCAGTATTGCGCGAACAGAAA 831
BSNT_03665___ 832 GAAAACGGAGCGAAGCGCAAACTTGTCGGTCTCGAAATGATTGAAAAAGG 881
|||||.|||||...|||.||.||.|||||.||.||.||||||||||||||
RBAM_022890__ 832 GAAAAAGGAGCCCCGCGAAAGCTGGTCGGACTTGAGATGATTGAAAAAGG 881
BSNT_03665___ 882 GATACCGCGGCACGGATA-----TGA--------GGTTTTCCAAAATGGC 918
|||.|||.|.|||||||| ||| |||.||||.|
RBAM_022890__ 882 GATTCCGAGACACGGATACGCCGTGAAAAAAGACGGTGTTCCGA------ 925
BSNT_03665___ 919 AAGTCTGTCGGAAAGGTGACAACCGGCACGCAGTCACCGACTTTAGGGAA 968
||||..|.||.||.||.||||||||.||.|||||||||..|||
RBAM_022890__ 926 -------TCGGTGAAGTCACGACAGGCACGCAATCTCCGACTTTAAAGAA 968
BSNT_03665___ 969 AAACGTCGGCCTTGCCTTAATTGATTCGGAAACAAGTGAGATCGGGACTG 1018
|||..||||||||||||||||..|..|||||...|||||..||||.||.|
RBAM_022890__ 969 AAATATCGGCCTTGCCTTAATCAAAACGGAATTCAGTGAAGTCGGAACGG 1018
BSNT_03665___ 1019 TTGTAGATGTAGAGATTCGCAAAAAATTAGTGAAAGCAAAGGTTGTCAAA 1068
..|||||.||.||.||.||.||||||...||.|||||.|||.|||||...
RBAM_022890__ 1019 AAGTAGAAGTGGAAATCCGTAAAAAAACGGTAAAAGCGAAGATTGTCCGC 1068
BSNT_03665___ 1069 ACACCATTTTATAAACG-CTAA----------- 1089
|||||.||||||||||| |.||
RBAM_022890__ 1069 ACACCGTTTTATAAACGTCCAAAACAGAGCTGA 1101
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