Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03638 and RBAM_022690

See Amino acid alignment / Visit BSNT_03638 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:55
# Commandline: needle
#    -asequence dna-align/BSNT_03638___spoIIIAH.1.9828.seq
#    -bsequence dna-align/RBAM_022690___spoIIIAH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03638___spoIIIAH-RBAM_022690___spoIIIAH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03638___spoIIIAH-RBAM_022690___spoIIIAH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03638___spoIIIAH
# 2: RBAM_022690___spoIIIAH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 670
# Identity:     518/670 (77.3%)
# Similarity:   518/670 (77.3%)
# Gaps:          32/670 ( 4.8%)
# Score: 2027.5
# 
#
#=======================================

BSNT_03638___      1 ATGCTTAAAAAACAAACCGTTTGGCTATTAACAATGCTCAGTCTTGTCGT     50
                     |||||.|||||||||||.||||||||.|||||||||||||||||.|||||
RBAM_022690__      1 ATGCTGAAAAAACAAACGGTTTGGCTTTTAACAATGCTCAGTCTCGTCGT     50

BSNT_03638___     51 GGTGTTAAGCGTCTACTATATCATGTCGCCGGAAAGCAAAAACGCCGTGC    100
                     |||.|||||.||.||.|||||.||||||||||||||||||||.|||||||
RBAM_022690__     51 GGTATTAAGTGTTTATTATATTATGTCGCCGGAAAGCAAAAATGCCGTGC    100

BSNT_03638___    101 AGATGCAAAGTGAAAAAAGCGCGTCTGACAGCGGAGAGGTCGCAACTGAA    150
                     |||||.||||.||||||||         |||||||||.|||||.||||||
RBAM_022690__    101 AGATGAAAAGCGAAAAAAG---------CAGCGGAGAAGTCGCCACTGAA    141

BSNT_03638___    151 AAAGCGCCTGCCAAGCAAGACACGAAGGAAAAAAGCGGTACAGAAACTGA    200
                     |||.|||||||   .|..||.|||||.||.||.|||||.|..|..||.||
RBAM_022690__    142 AAAACGCCTGC---TCCTGAAACGAAAGATAAGAGCGGAAGCGGCACGGA    188

BSNT_03638___    201 AAAAGGAAAAGAAGATGGAACAAAGGGAACGAAAGATTCATCA--GCA--    246
                           |||||||||.||.|||||.|||||||||||||| |.|  |||  
RBAM_022690__    189 ------AAAAGAAGACGGCACAAAAGGAACGAAAGATTC-TAAAGGCACA    231

BSNT_03638___    247 ------GACAAGGAAACATCCGCTGAAGCCAGTGAAAAA---GGAACTGT    287
                           ||.||.||||||||.||.|||||....||.|||   |||.|.||
RBAM_022690__    232 AAAGAGGATAAAGAAACATCAGCCGAAGCATCGGACAAAGACGGATCGGT    281

BSNT_03638___    288 TGTTACGGAAACAGCCGATGATGATCTGTTTACAACGTACCGTCTTGATT    337
                     .|..||.||||||||.|||||..|..|.||||||.|.|||||..|.||..
RBAM_022690__    282 CGCCACAGAAACAGCTGATGAAAACTTATTTACAGCATACCGCATGGAGC    331

BSNT_03638___    338 TAGAAGATGCCAGAAGCAAAGAAAGAGAAGAGCTGAATGCCATTGTGTCA    387
                     |.|||||.||.||||||||||||||.|||.||.|.||...||||||.|||
RBAM_022690__    332 TTGAAGACGCGAGAAGCAAAGAAAGGGAACAGTTAAACAGCATTGTTTCA    381

BSNT_03638___    388 AGCGATGATGCAACAGCCAAGGAGAAAAGCGAAGCATACGATAAAATGAC    437
                     |||||||||||.||.||.|||||.|||||||||||.||||||||||||||
RBAM_022690__    382 AGCGATGATGCGACCGCAAAGGAAAAAAGCGAAGCCTACGATAAAATGAC    431

BSNT_03638___    438 GGCTCTCAGTGAAGTGGAAGGAACAGAAAAACAGCTTGAAACGCTGATTA    487
                     |||.||.||..|.|..|||||.||.|||||||||||.|||||||||||||
RBAM_022690__    432 GGCGCTGAGCAATGCTGAAGGGACGGAAAAACAGCTGGAAACGCTGATTA    481

BSNT_03638___    488 AAACACAAGGTTACGAGGATGCGCTTGTTAATGCTGAAGGAGATAAAATC    537
                     ||||||||||.|||.|.||||||||.||..|||||||||||||.||||||
RBAM_022690__    482 AAACACAAGGCTACAAAGATGCGCTCGTGGATGCTGAAGGAGACAAAATC    531

BSNT_03638___    538 AATATTACAGTCAAATCAGACAAACACTCCAAATCGAAGGCGACAGCCAT    587
                     ||.|||||.||||..||.||||||||.||.||..|.||.||..|.||.||
RBAM_022690__    532 AACATTACCGTCATGTCTGACAAACATTCAAACGCAAAAGCTTCCGCTAT    581

BSNT_03638___    588 TATAGACCTTGTGGCAAAAGAAATCAAAACAATGAAAGATGTCGCTGTCA    637
                     .||.|||||.||||.||||||||||||.||.||||||||.|||||.||||
RBAM_022690__    582 CATTGACCTGGTGGAAAAAGAAATCAAGACGATGAAAGACGTCGCCGTCA    631

BSNT_03638___    638 CATTTGAACCATCCAAGTAA    657
                     |.||||||||..|.||||||
RBAM_022690__    632 CGTTTGAACCGACAAAGTAA    651


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