Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03613 and RBAM_022560

See Amino acid alignment / Visit BSNT_03613 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:53
# Commandline: needle
#    -asequence dna-align/BSNT_03613___spoIVB.1.9828.seq
#    -bsequence dna-align/RBAM_022560___spoIVB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03613___spoIVB-RBAM_022560___spoIVB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03613___spoIVB-RBAM_022560___spoIVB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03613___spoIVB
# 2: RBAM_022560___spoIVB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1296
# Identity:    1032/1296 (79.6%)
# Similarity:  1032/1296 (79.6%)
# Gaps:          30/1296 ( 2.3%)
# Score: 4076.0
# 
#
#=======================================

BSNT_03613___      1 ATGCCCGATAACATCAGAAAAGCAGTAGGTTTAATTCTCCTTGTTTCGTT     50
                     ||||.|||||||||.||.||||||.|||||.||||||||||||||||.||
RBAM_022560__      1 ATGCACGATAACATGAGGAAAGCAATAGGTGTAATTCTCCTTGTTTCTTT     50

BSNT_03613___     51 ATTAAGTGTAGGTTTATGCAAACCGCTAAAAGAATATTTATTGATTCCAA    100
                     |.||||||||||.||.|..||.||..|.||||||||||||.||||.||..
RBAM_022560__     51 ACTAAGTGTAGGCTTTTTTAAGCCATTTAAAGAATATTTACTGATACCGT    100

BSNT_03613___    101 CGCAAATGAGAGTATTTGAAACCCAAACACAAGCGATTGAAACAAGTT--    148
                     |..||||||..||.|||||||.|||.|||||.||..||    |..|||  
RBAM_022560__    101 CAGAAATGAACGTTTTTGAAAACCAGACACAGGCCGTT----CCGGTTAA    146

BSNT_03613___    149 --TATCGGTAAACGCTCAGACACCA----GAATCCTCAGAAGCGTTTACA    192
                       .|||..|||.||||.|.|    |    ||||..||||||||.|||||.
RBAM_022560__    147 TGCATCAATAAGCGCTGAAA----AGGGCGAATTATCAGAAGCCTTTACG    192

BSNT_03613___    193 GT-AAAGAAAGATC-CG--CATGAAATCAAGGTGAC-GGGCAAA-AAATC    236
                     .| |||| ||||.| ||  ||||.||.||   |.|| ||||||| |||  
RBAM_022560__    193 CTGAAAG-AAGAGCACGGCCATGCAAACA---TAACAGGGCAAACAAA--    236

BSNT_03613___    237 AGGTGAGTCAGAATTGGTATATGATCTTGCCGGATTTCCAATTAAAAAAA    286
                     |||...|||||||.|.|||||||||||||||||||||||.||||||||||
RBAM_022560__    237 AGGCCGGTCAGAAGTAGTATATGATCTTGCCGGATTTCCCATTAAAAAAA    286

BSNT_03613___    287 CAAAAGTGCATGTTCTTCCTGATTTAAAGGTTATACCTGGCGGACAATCA    336
                     |.|||||||.|||.|||||.||.||.|||||.||.||.||||||||.||.
RBAM_022560__    287 CGAAAGTGCGTGTCCTTCCAGAATTGAAGGTCATTCCGGGCGGACAGTCC    336

BSNT_03613___    337 ATCGGTGTAAAACTTCATTCCGTCGGTGTTCTTGTCGTCGGATTTCATCA    386
                     ||||||||||||||.|||||.|||||||||.|.||||||||.|||||.||
RBAM_022560__    337 ATCGGTGTAAAACTGCATTCAGTCGGTGTTTTGGTCGTCGGTTTTCACCA    386

BSNT_03613___    387 AATCAATACAAGTGAAGGCAAAAAATCTCCGGGAGAAACGGCCGGAATTG    436
                     ..|.|..||||..||.||.|||||.||||||||||||...||.|||||||
RBAM_022560__    387 GGTGATGACAAAGGATGGGAAAAAGTCTCCGGGAGAACAAGCGGGAATTG    436

BSNT_03613___    437 AAGCGGGCGACATCATTATTGAGATGAATGGACAGAAAATTGAAAAAATG    486
                     ||.|.|||||||||||||||.|.|||||.|||||.||||||||.||||||
RBAM_022560__    437 AATCTGGCGACATCATTATTAAAATGAACGGACATAAAATTGATAAAATG    486

BSNT_03613___    487 AATGATGTAGCCCCATTTATTCAAAAGGCTGGGAAAACTGGTGAATCTTT    536
                     |..||..|.|||||.|||||||||||.||.||.|||||.|||||||||||
RBAM_022560__    487 AGCGACATCGCCCCGTTTATTCAAAAAGCGGGCAAAACCGGTGAATCTTT    536

BSNT_03613___    537 AGATTTACTGATCAAACGTGATAAACAGAAAATCAAAACGAAGCTGATCC    586
                     .||||||.||.|.|||||.|||||.||.|||||||||||.||||||||.|
RBAM_022560__    537 GGATTTATTGGTGAAACGCGATAAGCAAAAAATCAAAACAAAGCTGATTC    586

BSNT_03613___    587 CAGA-AAAGGATGAAGGAGAAGGCAAATACAGAATCGGGTTATATATCAG    635
                     | || ||||||.||||..||.||.|||||..|||||||..|.||||||.|
RBAM_022560__    587 C-GACAAAGGACGAAGCCGAGGGGAAATATCGAATCGGCCTTTATATCCG    635

BSNT_03613___    636 AGATTCTGCTGCCGGCATCGGCACTATGACCTTTTATGAACCGAAAACAA    685
                     .|||||.||.||||||||||||||.|||||.||||.||||||||||||||
RBAM_022560__    636 CGATTCGGCAGCCGGCATCGGCACCATGACTTTTTTTGAACCGAAAACAA    685

BSNT_03613___    686 AAAAATACGGAGCACTTGGCCACGTGATTTCCGATATGGACACAAAGAAA    735
                     ||||||||||.|||.|.||||||||.||.||.||||||||.|||||.|||
RBAM_022560__    686 AAAAATACGGCGCATTGGGCCACGTCATCTCTGATATGGATACAAAAAAA    735

BSNT_03613___    736 CCAATTGTAGTGGAGAATGGAGAAATCGTTAAATCCACTGTAACATCAAT    785
                     ||.|||||.||.||..|.|||||||||||....||.|||||||||||.||
RBAM_022560__    736 CCGATTGTTGTAGAAGACGGAGAAATCGTCCGTTCAACTGTAACATCGAT    785

BSNT_03613___    786 TGAAAAAGGGACAGGCGGTAATCCGGGAGAAAAACTGGCGCGATTTTCCT    835
                     |||||||||.|.||||||.|||||.||.|||||||||||..|.|||||.|
RBAM_022560__    786 TGAAAAAGGAAAAGGCGGCAATCCCGGCGAAAAACTGGCAAGGTTTTCGT    835

BSNT_03613___    836 CAGAACGCAAAACGATCGGGGATATTAACAGAAACAGCCCGTTTGGGATT    885
                     |||||||.|||||||||||.|||||||||.|.|||||||||||.||.||.
RBAM_022560__    836 CAGAACGGAAAACGATCGGCGATATTAACCGCAACAGCCCGTTCGGCATC    885

BSNT_03613___    886 TTCGGCACACTGCATCAGCCGATTCAAAACAACATATCAGATCAAGCATT    935
                     |||||.||||||||||||||||||.||||||||||.||.||..||||..|
RBAM_022560__    886 TTCGGGACACTGCATCAGCCGATTAAAAACAACATTTCCGACAAAGCGCT    935

BSNT_03613___    936 GCCGGTTGCGTTTTCTACCGAAGTCAAAAAAGGGCCGGCTGAAATTTTAA    985
                     .|||.||||.||.||.|..|||||.||||||||.||.||..||||..|.|
RBAM_022560__    936 TCCGATTGCTTTGTCAAATGAAGTAAAAAAAGGACCTGCGCAAATGCTGA    985

BSNT_03613___    986 CCGTTATTGATGATGACAAAGTAGAAAAATTCGATATTGAAATCGTTAGC   1035
                     |.|||||.||..|.||.||||||||.|||||.||||||||||||||.|||
RBAM_022560__    986 CGGTTATCGAAAACGATAAAGTAGAGAAATTTGATATTGAAATCGTCAGC   1035

BSNT_03613___   1036 ACAACGCCGCAAAAATTCCCTGCGACAAAAGGAATGGTGTTGAAAATTAC   1085
                     ||.|||||||||||||||||.||||||||.|||||||||||||||.|.||
RBAM_022560__   1036 ACCACGCCGCAAAAATTCCCGGCGACAAAGGGAATGGTGTTGAAAGTGAC   1085

BSNT_03613___   1086 CGATCCAAGGCTGTTGAAAGAAACAGGAGGCATCGTACAGGGGATGAGCG   1135
                     .|||||.|..|||.|||||..|||.||.||.|||||.|||||||||||||
RBAM_022560__   1086 AGATCCGAAACTGCTGAAAAGAACCGGCGGAATCGTTCAGGGGATGAGCG   1135

BSNT_03613___   1136 GAAGTCCGATTATTCAAAATGGAAAAGTGATCGGTGCTGTCACCCATGTA   1185
                     ||||.|||||.||.||.||.|||||.||..||||.||.||.|||||.|||
RBAM_022560__   1136 GAAGCCCGATCATCCAGAACGGAAAGGTCGTCGGAGCCGTAACCCACGTA   1185

BSNT_03613___   1186 TTTGTAAATGACCCGACAAGCGGCTACGGTGTTCATATTGAATGGATGCT   1235
                     |||||.|||||.|||||||||||||||||.||||||||.|||||||||||
RBAM_022560__   1186 TTTGTCAATGATCCGACAAGCGGCTACGGCGTTCATATCGAATGGATGCT   1235

BSNT_03613___   1236 GTCAGAAGCAGGAATCGATATTTACGGAAAAGAAAAAGCAAGCTGA   1281
                     |||.|||||.||..|.|||.|||||||.|||||.||||||||||||
RBAM_022560__   1236 GTCTGAAGCGGGTGTTGATGTTTACGGGAAAGACAAAGCAAGCTGA   1281


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