Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03595 and RBAM_022430
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_03595___mmgC.1.9828.seq
# -bsequence dna-align/RBAM_022430___mmgC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03595___mmgC-RBAM_022430___mmgC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03595___mmgC-RBAM_022430___mmgC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03595___mmgC
# 2: RBAM_022430___mmgC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1178
# Identity: 834/1178 (70.8%)
# Similarity: 834/1178 (70.8%)
# Gaps: 82/1178 ( 7.0%)
# Score: 2777.0
#
#
#=======================================
BSNT_03595___ 1 TTGCATGTAACCCAAGAGCAAGTCATGATGCGAAAAATGGTGCGTGATTT 50
.|||||.|.||..|||||||..||||||||.|||||||||||||||||||
RBAM_022430__ 1 ATGCATTTTACAGAAGAGCACATCATGATGAGAAAAATGGTGCGTGATTT 50
BSNT_03595___ 51 TGCACGAAAAGAAATTGCTCCCGCTGCGGAAATCATGGAGAAAACGGACG 100
|||.||.||.|||||.||.||.|..|..||..|||||||...|||.||.|
RBAM_022430__ 51 TGCCCGCAAGGAAATCGCGCCGGTGGTTGAGCTCATGGAATCAACAGATG 100
BSNT_03595___ 101 AATTTCCCTTTCAGCTGATCAAAAAAATGGGTAAACACGGACTGATGGGA 150
|||||||....|.||||||.|||||||||||..||...|||.|||||||.
RBAM_022430__ 101 AATTTCCGGAGCGGCTGATTAAAAAAATGGGCGAAGCGGGATTGATGGGT 150
BSNT_03595___ 151 ATACCGGTGCCGGAACAATACGGCGGTGCTGGAGCGGACGTTGTT----- 195
||.||.||.||||||...||||||||.||.||.|| ||.|
RBAM_022430__ 151 ATTCCCGTCCCGGAAACTTACGGCGGGGCGGGTGC------TGATACAAC 194
BSNT_03595___ 196 -TCTTATATTTTGGCAATTCATGAGATTTCTAGAATCAGCGCGGCTGTCG 244
|||||.|||||.||.||||||||.||.||.|.|.||||||||||.||||
RBAM_022430__ 195 ATCTTACATTTTAGCGATTCATGAAATATCAAAAGTCAGCGCGGCCGTCG 244
BSNT_03595___ 245 GCGTGATTCTCTCCGTTCATACCTCAGTCGGCACGAAT-CCGATTCTGTA 293
||||.|||.|.|||||.||.||.|||||.||.|| ||| ||||||.||.|
RBAM_022430__ 245 GCGTCATTTTGTCCGTCCACACATCAGTAGGGAC-AATCCCGATTTTGCA 293
BSNT_03595___ 294 TTTCGGCAACGAAG------AACAGAAGATGAAATATATACCAAATCTCG 337
||||||.|..|||| ||||.|.| |||||.||.||.||.|
RBAM_022430__ 294 TTTCGGGACAGAAGCCCAAAAACAAACG------TATATTCCGAAGCTGG 337
BSNT_03595___ 338 CGTCAGGAGACCAT-TTGGGCGCATTTGCACTAACGGAGCCTCACTCGGG 386
|..|.||.||..|| ||||| ||.|||||.||.||.||||||||.||.||
RBAM_022430__ 338 CAGCGGGCGAATATATTGGG-GCTTTTGCGCTTACTGAGCCTCAATCCGG 386
BSNT_03595___ 387 GTCGGATGCCGGGA-GCCTCCGCACAACAGCAAT-CAAAAAGAACGG--C 432
.||.|||| ||||| ||||....|||||.||..| |.||||| .||| |
RBAM_022430__ 387 ATCTGATG-CGGGAGGCCTGAAAACAACGGCCGTGCGAAAAG-GCGGTTC 434
BSNT_03595___ 433 AAATACCTATTAAACGGATCGAAAATATTCATAACGAATGGCGGAGCAGC 482
|.||| |..|.|||||.||.|||||.||.||.||.||.||.|||||.||
RBAM_022430__ 435 ATATA--TTCTGAACGGTTCAAAAATCTTTATTACAAACGGAGGAGCGGC 482
BSNT_03595___ 483 TGATATCTATATCACATTTGCTTTAACAGCTCCAGATCAAGGCAGGCACG 532
.|||.|.|||.|.|||||.||..||||.|.|||.|.|.||||.||..|.|
RBAM_022430__ 483 AGATCTGTATCTGACATTCGCCATAACCGATCCGGGTAAAGGGAGAAAGG 532
BSNT_03595___ 533 GGATTTCGGCTTTTATTGTTGAAAAAAACACACCCGGTTTTACCGTTGGA 582
|||||||.||.|||||.||||||||||||||||||||||||.|.||.|||
RBAM_022430__ 533 GGATTTCAGCGTTTATCGTTGAAAAAAACACACCCGGTTTTTCTGTCGGA 582
BSNT_03595___ 583 AAAAAAGAAAGAAAGCTGGGGCT-TTATGGCTCCAATACTACGGAACTGA 631
||||||||||.||||||.||.|| ||| ||.|||||||||...|||.||.
RBAM_022430__ 583 AAAAAAGAAAAAAAGCTCGGACTGTTA-GGTTCCAATACTGTCGAATTGC 631
BSNT_03595___ 632 TTTTTGATAATGCAGAAGTGCC---TGAAGCCAATTTGCTTGGCAAAGAG 678
..|||||..|.||||||.|.|| |||| ||...|||.|||.|||||
RBAM_022430__ 632 AGTTTGACCAAGCAGAAATTCCGATTGAA---AACCGGCTCGGCGAAGAG 678
BSNT_03595___ 679 GGGGATGGC-TTTCACATTGCCATGGCGAATTTAAATGTCGGCCGGATCG 727
||.||.||| ||||| ||.||||||...||..|..|.|||||.|||||||
RBAM_022430__ 679 GGCGAGGGCTTTTCA-ATCGCCATGAAAAACCTTGACGTCGGACGGATCG 727
BSNT_03595___ 728 GCATTGCGGCACAGTCCCTCGGAATTGCAGAGGCGGCTCTTGAGCATG-- 775
||||.|||||.|||.|.|||||.|||...||.|||||.||.| || ||
RBAM_022430__ 728 GCATAGCGGCTCAGGCGCTCGGGATTATCGAAGCGGCGCTCG-GC-TGCT 775
BSNT_03595___ 776 CCGTTGATTATGCGAA-----GCAGCGAGTGCAATTTGGAAGGCCGATCG 820
|.||.||.||.||.|| ||||| ||.||.||.||.||.||||
RBAM_022430__ 776 CGGTGGAGTACGCCAAAACCCGCAGC-----CAGTTCGGCAGACCCATCG 820
BSNT_03595___ 821 CAGCCAATCAAGGCATATCATTTAAGCTGGCTGACATGGCGACTAGGGCA 870
|..|.|||||.|.|.|.||||||||..|..|||||||||||||.|
RBAM_022430__ 821 CTTCGAATCAGGCCGTTTCATTTAAATTATCTGACATGGCGACGA----- 865
BSNT_03595___ 871 GAGGCGGCAAG--AC------ATCTTGTCTACCACGCCGCAGACCTTCAT 912
|.|||| ||| || || |.|||||.||.||.||.||.||..||
RBAM_022430__ 866 -ATGCGG-AAGCTACCAAATTAT-TGGTCTATCATGCTGCTGATCTGTAT 912
BSNT_03595___ 913 AACCGCGGCCTAAATTGTGGAAAAGAAGCGTCTATGGCTAAACAATTTGC 962
.|.||.||.||....||.|||||||||||.||||||||.||.|||||.||
RBAM_022430__ 913 CAGCGAGGGCTTCCGTGCGGAAAAGAAGCATCTATGGCGAAGCAATTCGC 962
BSNT_03595___ 963 TTCCGATGCAGCCGTGAAGGCAGCGTTAGACGCCGTTCAAATTTATGGAG 1012
.||||||||.||..||||.||.|||.|.||.||.||.||.|||.|.||.|
RBAM_022430__ 963 GTCCGATGCGGCGATGAAAGCGGCGGTGGAGGCTGTGCAGATTCACGGCG 1012
BSNT_03595___ 1013 GATATGGCTATATGAAGGATTATCCGGTTGAGCGCTTGCTTCGCGATGCA 1062
|.||.|||||||||||.||.|||||.|..|||||.||..||||.|||||.
RBAM_022430__ 1013 GCTACGGCTATATGAAAGAGTATCCCGCGGAGCGTTTATTTCGGGATGCG 1062
BSNT_03595___ 1063 AAGGTGACGCAAATTTATGAAGGGACGAACGAGATTCAAAGACTGATTAT 1112
||.||.||||||||.||||||||.||.||.|||||||||||.||||||||
RBAM_022430__ 1063 AAAGTTACGCAAATCTATGAAGGAACCAATGAGATTCAAAGGCTGATTAT 1112
BSNT_03595___ 1113 TTCCAAGTATTTGCTTGGCGGAACCTGA 1140
|||.||||||.|.||| .|| |.|
RBAM_022430__ 1113 TTCTAAGTATCTTCTT----CAA--TAA 1134
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