Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03593 and RBAM_022410
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_03593___prpD.1.9828.seq
# -bsequence dna-align/RBAM_022410___prpD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03593___prpD-RBAM_022410___prpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03593___prpD-RBAM_022410___prpD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03593___prpD
# 2: RBAM_022410___prpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1474
# Identity: 1072/1474 (72.7%)
# Similarity: 1072/1474 (72.7%)
# Gaps: 101/1474 ( 6.9%)
# Score: 3687.5
#
#
#=======================================
BSNT_03593___ 1 ATG-CCGAA--------AACGGATCG-TGTTATCGAAGAAATCACAGACT 40
||| |.||| ||.||| || |||.||||||||.||..|.||||
RBAM_022410__ 1 ATGACAGAACCCCGCCGAATGGA-CGCTGTAATCGAAGAGATTTCTGACT 49
BSNT_03593___ 41 ATGTGCTTGAGAAAGAGATT-ACTAGTGCCGAAGCGTATACAACAGCGGG 89
|.|||||..|..|.|||||| || |||.|.|||||.|.|||.||.||.||
RBAM_022410__ 50 ACGTGCTCCATCAGGAGATTGAC-AGTTCAGAAGCTTTTACTACGGCAGG 98
BSNT_03593___ 90 GCATGTATTGCTGGATACCCTGGGCTGCGGGATCTTGGCGCTACGGTATC 139
.|||||..|.||.|||||..|.||||||||.||.||||||||..|.||||
RBAM_022410__ 99 ACATGTGCTTCTTGATACGATAGGCTGCGGAATTTTGGCGCTCAGCTATC 148
BSNT_03593___ 140 CGGAATGCACAAAGCTGCTTGGCCCGATTGTTCCAGGAACGACTGTGCCG 189
|.|||||.|||||||||||.|||||||||||.||.|||||..|.|||||.
RBAM_022410__ 149 CCGAATGTACAAAGCTGCTCGGCCCGATTGTCCCGGGAACCGCCGTGCCC 198
BSNT_03593___ 190 AATGGAAGCAAAGTGCCGGGAACGTCATATGTTCTCGATCCTGTGAGGGC 239
||.||.||||.|||.|||||.|||.|.|.||||.|.||.||.||.|.|||
RBAM_022410__ 199 AACGGCAGCAGAGTCCCGGGCACGCCTTTTGTTTTAGACCCGGTCACGGC 248
BSNT_03593___ 240 AGCGTTTAATATCGGCTGCATGATTCGCTGGCTCGATTACAACGATACGT 289
.||.||||||||||||||.||.|...|.|||||||||||.||.|||||||
RBAM_022410__ 249 TGCTTTTAATATCGGCTGTATCAACAGGTGGCTCGATTATAATGATACGT 298
BSNT_03593___ 290 GGCTGGCGGCGGAGTGGGGGCATCCATCCGATAACTTGGGAGGAAT---- 335
||||.||.|||||.|||||.|||||.||.||.||..|.|||||.||
RBAM_022410__ 299 GGCTTGCTGCGGAATGGGGTCATCCGTCTGACAATCTCGGAGGCATATTG 348
BSNT_03593___ 336 CCTTGCCGCTGCTGATTATGTATCAAGAGTGAGGCTGTCTGAAGGAAAAG 385
.|||| |||.||||||.||||.||||||.||.|.||.|||||.||||
RBAM_022410__ 349 GCTTG----TGCGGATTATATATCCAGAGTGCGGATTTCAGAAGGGAAAG 394
BSNT_03593___ 386 AGCCGTTAACAGTAAGCGACGTACTTGAGATG----ATGATCAAAGCACA 431
|.|||.|.||.||..||||.||.||| || |||||||||||.||
RBAM_022410__ 395 AACCGCTTACCGTGCGCGATGTGCTT----TGCGCAATGATCAAAGCGCA 440
BSNT_03593___ 432 CGAGATCCAAGGTGTGCTGGCGTTAGAAAACAGCTTAAATCGAGTTGGCC 481
|||.||.|||||..|.||.||.||.||||||||||||||..||||.||.|
RBAM_022410__ 441 CGAAATTCAAGGAATTCTCGCTTTGGAAAACAGCTTAAACAGAGTGGGGC 490
BSNT_03593___ 482 TTGACCATGTGCTGTTTGTCAAAGTTGCGACAACCGCTG-TTGCG-GCAA 529
|||||||||||||||||||.|||||.|||||..|.|||| ||||| ||||
RBAM_022410__ 491 TTGACCATGTGCTGTTTGTGAAAGTGGCGACTGCGGCTGTTTGCGCGCAA 540
BSNT_03593___ 530 A-GCTTTTGGGCGGCGGAAGAGAAGAAATCAAAAATGCGCTTTCGAATGC 578
| || ||||||||..||.|||.||||||||.||.||..|.||..||||
RBAM_022410__ 541 ATGC---TGGGCGGCTCAAAAGAGGAAATCAATAACGCCGTATCTCATGC 587
BSNT_03593___ 579 ATGGATTGACAATGC-AGCATTGAGGACATACCGCCATTCACCAAATACA 627
.||||||||.|||.| ||| .|.||.||.|||||.|||.|.||.||.||.
RBAM_022410__ 588 CTGGATTGATAATTCAAGC-CTCAGAACGTACCGTCATGCGCCGAACACC 636
BSNT_03593___ 628 GGCTCGCGTAAATCATGGGCGGCAGGAGATGCAACGAGCAGAGGTGTTCA 677
||.||.||.||||||||||||||.||.||.||.|||||||||||.||..|
RBAM_022410__ 637 GGATCACGCAAATCATGGGCGGCCGGCGACGCGACGAGCAGAGGGGTATA 686
BSNT_03593___ 678 TTTGGCGCTGATGTCGTTAAAAGGGGAAATGGGTTATCCGACAGCCTTGA 727
||||||.||.|||.||...|||||.||||||||.||.|||||.||..|||
RBAM_022410__ 687 TTTGGCCCTTATGGCGCACAAAGGTGAAATGGGGTACCCGACGGCTCTGA 736
BSNT_03593___ 728 GTGCACCGGGTTGGGGGTTCCAAGACGTTTTATTCAATAA-------GAA 770
..|||.|.||.|||||.||.||||||||.||.|| ||| |||
RBAM_022410__ 737 CCGCATCTGGGTGGGGATTTCAAGACGTATTGTT---TAACCGGCGGGAA 783
BSNT_03593___ 771 AGAGATCAAGCTTGCCTGTCCGCTCGACGCTTATGTCATGGAAAATGTGT 820
||.|||||||||.|.|||||.|...|||||||.|||||.|||||..
RBAM_022410__ 784 ----ATAAAGCTTGCCCGCCCGCTTGGGTCTTATGTGATGGAGAATGTTC 829
BSNT_03593___ 821 TATTTAAAGTGTCTTATCCTGCGGAATTTCACGCCCAGACAGCGGCGGAG 870
|.||||||||.||.||.||.||.|||||.||.|||||||||||||||||.
RBAM_022410__ 830 TGTTTAAAGTATCCTACCCGGCTGAATTCCATGCCCAGACAGCGGCGGAA 879
BSNT_03593___ 871 TGCGCCGTCATTCTTCACCCGCAGGT-AAAGAACCGGATTGACGAGATTG 919
|||||.|||...|||||.|||.|||| |||| ||||.||.||.||.||||
RBAM_022410__ 880 TGCGCGGTCCGGCTTCATCCGGAGGTGAAAG-ACCGCATCGAAGACATTG 928
BSNT_03593___ 920 ACCGTGTTGTCATCA-GA-----ACGCATGAATCCGCTATCCGAATCATT 963
||.| .|||| || ||||||||.||.||.|||||.||.||.
RBAM_022410__ 929 ACAG------GATCACGATTATGACGCATGAGTCGGCAATCCGGATTATC 972
BSNT_03593___ 964 GATAAAAAAGGCCCGCTCCACAATCCGGCAGACCGTGATCACTGCCTCCA 1013
|||||||||||.|||||.|||||||||||.|||||.||||||||||||||
RBAM_022410__ 973 GATAAAAAAGGGCCGCTTCACAATCCGGCTGACCGGGATCACTGCCTCCA 1022
BSNT_03593___ 1014 ATACATTACAGCAATCGGTTTGCTTTTTGGTGATATCACGGCACAGCATT 1063
.||||||||.||||||||..|||||||.||.|||||||||||..|.||||
RBAM_022410__ 1023 GTACATTACGGCAATCGGGCTGCTTTTCGGAGATATCACGGCCGATCATT 1072
BSNT_03593___ 1064 ATGAAGCTGAAACAGCGAGTGATCCGAGAATAGATAAACTTCGTGA-TAA 1112
||||||..|||||||||..|||.|||.||||.||||.|.|.|| || .||
RBAM_022410__ 1073 ATGAAGAGGAAACAGCGTCTGACCCGCGAATTGATACATTGCG-GAGCAA 1121
BSNT_03593___ 1113 AATGGAGGTGACTGAAAATAAAACATATACCGAGGATTATTTGAAACCTG 1162
||||||||||||.|||.|.|||.|.||..|..|.|||||.|| |.|||.|
RBAM_022410__ 1122 AATGGAGGTGACGGAACACAAAGCGTACTCAAAAGATTACTT-AGACCCG 1170
BSNT_03593___ 1163 -ATAAACGTTCCATCTCAAATGCCGTTCAGGTTCATTTTAAAGACGGAAC 1211
||||.||.|||||.|||||||||||.|||||.|||||||.||||||.||
RBAM_022410__ 1171 AATAAGCGATCCATATCAAATGCCGTACAGGTGCATTTTACAGACGGCAC 1220
BSNT_03593___ 1212 GAGC-ACGGAAATGGTGGAATGTGAGTTTCCCCTCGGCCATCGTTTTCGA 1260
| || ||||.|..|.|.||||||||.|..||.|||||.||.||.||.||.
RBAM_022410__ 1221 G-GCTACGGGACGGATTGAATGTGAATACCCGCTCGGGCACCGGTTCCGC 1269
BSNT_03593___ 1261 AGAGAGGAAGCAGTGCCGAA-ACTGTTGGAAAAGTTTTCTGACAATC-TC 1308
|||.|.|||||.||.||||| |.|.|| |..||||||||.| |||.| ||
RBAM_022410__ 1270 AGAAAAGAAGCCGTTCCGAAGATTCTT-GCCAAGTTTTCAG-CAAACATC 1317
BSNT_03593___ 1309 AAAACCCATTATCCTGAT--AAACAGCA-CAAACACATTTATGAGCGCTG 1355
|..||.||||.| |.|| ||.||||| |.|| |.||..|.|||..|||
RBAM_022410__ 1318 AGCACTCATTTT--TCATTGAAGCAGCAGCGAA-AAATCGAAGAGGCCTG 1364
BSNT_03593___ 1356 ------TACCAGC--TATGAGACATTACAAACGATGCGCGTAAATGAATT 1397
||.|.|| .||| ||.|.|.|..||||.|.||||||
RBAM_022410__ 1365 CGAACATAGCGGCCGAATG--------CAGAAGCTCAGCGTCAGTGAATT 1406
BSNT_03593___ 1398 CGTAGAC--ATGTTCTGCATGTAA 1419
..|.||| || |||| |.|.|||
RBAM_022410__ 1407 TATGGACTTAT-TTCT-CGTATAA 1428
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