Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03591 and RBAM_022400

See Amino acid alignment / Visit BSNT_03591 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:51
# Commandline: needle
#    -asequence dna-align/BSNT_03591___yqiQ.1.9828.seq
#    -bsequence dna-align/RBAM_022400___yqiQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03591___yqiQ-RBAM_022400___yqiQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03591___yqiQ-RBAM_022400___yqiQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03591___yqiQ
# 2: RBAM_022400___yqiQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 914
# Identity:     672/914 (73.5%)
# Similarity:   672/914 (73.5%)
# Gaps:          16/914 ( 1.8%)
# Score: 2410.0
# 
#
#=======================================

BSNT_03591___      1 ATGTCGTGGATCGTCAATAAGCAATCGTCACAAGAGGAGCTTGCCGGGCG     50
                     |||.||||||||||||..|||||.|||||.||||||||||||||.|.|||
RBAM_022400__      1 ATGACGTGGATCGTCAGCAAGCAGTCGTCTCAAGAGGAGCTTGCAGAGCG     50

BSNT_03591___     51 TTTCCGCAAGCTGATGTCAGCACCGGACATTCTTCAAATTCCCGGCGCCC    100
                     .|||||.|.|||||||.||||.|||||..|.||.||.||.||||||||||
RBAM_022400__     51 GTTCCGTACGCTGATGACAGCGCCGGATCTACTGCAGATCCCCGGCGCCC    100

BSNT_03591___    101 ATGACGGGATGGCCGCTTTGCTTGCGAAAGAAGCCGGTTTTTCTGCTATT    150
                     ||||.|.||||||||||.|..|.||.||..||.|.||.|||||.|||.||
RBAM_022400__    101 ATGATGCGATGGCCGCTCTTATCGCCAAGAAAACGGGGTTTTCGGCTCTT    150

BSNT_03591___    151 TATTTGTCCGGTGCTGCCTATACAGCCAGCAGGGGGCTGCCTGATTTAGG    200
                     |||||.||.||.||.||.||.||.||.|||||.||||||||.||||||||
RBAM_022400__    151 TATTTATCAGGCGCGGCTTACACGGCGAGCAGAGGGCTGCCCGATTTAGG    200

BSNT_03591___    201 GATCATCACATCGGCAGAGATAGCTGAACGGGCCAAAGATCTTGTACGTG    250
                     |||||||||.|||||.||.||.||||||||||..||||||||.||.||..
RBAM_022400__    201 GATCATCACGTCGGCGGAAATGGCTGAACGGGTTAAAGATCTGGTCCGCT    250

BSNT_03591___    251 CAGCTGATCTGCCTCTGCTTGTGGATATCGATACGGGATTTGGCGGTGTC    300
                     |..||||||||||..|.|||||.|||||.||.|||||.||.||.||.||.
RBAM_022400__    251 CGTCTGATCTGCCCGTCCTTGTCGATATTGACACGGGTTTCGGAGGAGTG    300

BSNT_03591___    301 TTAAATGCCGCCCGAACAGCCCGGGAGATGCTTGAAGCAAGGGTAGCAGC    350
                     .|.|||||||||||.||.||....||.|||..||||||..|.|..||.||
RBAM_022400__    301 CTGAATGCCGCCCGGACGGCGAAAGAAATGTATGAAGCGCGCGCGGCCGC    350

BSNT_03591___    351 CGTTCAAATAGAAGACCAGCAGCTTCCAAAAAAATGCGGACATTTAAATG    400
                     |||.||.||.||.||.||||..||.||.|||||||||||||||.|.||||
RBAM_022400__    351 CGTCCAGATGGAGGATCAGCGCCTGCCGAAAAAATGCGGACATCTGAATG    400

BSNT_03591___    401 GCAAACAGCTAGTTCCGATCAAGGAAATGGCGCAAAAAATAAAAGCCATT    450
                     |.||.|||||.||.|||||..|.|||||||||||||||||..||||..| 
RBAM_022400__    401 GGAAGCAGCTCGTGCCGATTGAAGAAATGGCGCAAAAAATCCAAGCGGT-    449

BSNT_03591___    451 AAACAAGCG----GCACCCTCCCTTATTGTTGTTGCCCGTACTGATGCCA    496
                        ||||||    ||.||..|.|||.||||||||||..|.||.||.||||
RBAM_022400__    450 ---CAAGCGGGCCGCGCCGACTCTTCTTGTTGTTGCGAGAACAGACGCCA    496

BSNT_03591___    497 GGGCGCAGGAAGGGCTTGATGCCGCAATAAAA----CGTTCAGAGGCTTA    542
                     |...|||||||||..|.||.|..|||.|||||    |||.|    |||||
RBAM_022400__    497 GACAGCAGGAAGGATTGGAGGGGGCATTAAAAAGGGCGTCC----GCTTA    542

BSNT_03591___    543 CATTGAGGCGGGAGCGGACGCAATTTTCCCGGAAGCGCTGCAGGCGGAGA    592
                     .||..|.|||||.||.|||||..||||.|||||||||||.||..|.||.|
RBAM_022400__    543 TATAAAAGCGGGTGCTGACGCTGTTTTTCCGGAAGCGCTCCAATCCGAAA    592

BSNT_03591___    593 ATGAATTCCGCCAGTTTGCTGAGCGTATCTCCGTTCCGCTCCTTGCGAAT    642
                     .|||||||.|...||||.|..|.|..|||...||.|||.|.||.||.||.
RBAM_022400__    593 GTGAATTCAGAGCGTTTTCCAAACAAATCAGTGTGCCGATTCTCGCAAAC    642

BSNT_03591___    643 ATGACTGAATTTGGGAAAACGCCGTATTATCGTGCCGATGAATTCGAAGA    692
                     |||||||||||.||.||||||||||||||..||||.||||||||....||
RBAM_022400__    643 ATGACTGAATTCGGAAAAACGCCGTATTACAGTGCTGATGAATTTTCCGA    692

BSNT_03591___    693 TATGGGGTTTCACATGGTGATATATCCTGTCACCTCGCTTCGAGCGGCGG    742
                     ||||||.|.|||.|||||.||.||.||.|||||.||.||..||.||||||
RBAM_022400__    693 TATGGGCTGTCAGATGGTCATTTACCCGGTCACGTCACTCAGAACGGCGG    742

BSNT_03591___    743 CAAAAGCTTGTGAGCGGATGTTTGGTTTGATGAAGGAGCACGGCTCACAA    792
                     |.||.||||.||||||.||.||..|..|..||||.||..|.|||||.|||
RBAM_022400__    743 CCAAGGCTTTTGAGCGTATTTTCCGCCTTCTGAAAGAAGAAGGCTCGCAA    792

BSNT_03591___    793 AAAGAAGGACTTCATGATATGCAGACACGAAAAGAACTGTACGATACGAT    842
                     |||||.||.|||...|||||||||||..||||||||||.||.||.|||||
RBAM_022400__    793 AAAGAGGGGCTTTCGGATATGCAGACGAGAAAAGAACTATATGAAACGAT    842

BSNT_03591___    843 TTCTTATTATGACTATGAAGCGTTAGACAAAACGATTGCCAAGACCGTTT    892
                     ..||||..||||||||||||...|.||..||.|.||||||||.||..|..
RBAM_022400__    843 CGCTTACGATGACTATGAAGAACTGGATCAATCCATTGCCAAAACAATAC    892

BSNT_03591___    893 TGCCTGACGAATAA    906
                     ||||.|||||.|.|
RBAM_022400__    893 TGCCGGACGACTGA    906


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03591 and RBAM_022400

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
