Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03569 and RBAM_022280

See Amino acid alignment / Visit BSNT_03569 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:49
# Commandline: needle
#    -asequence dna-align/BSNT_03569___yqiX.1.9828.seq
#    -bsequence dna-align/RBAM_022280___yqiX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03569___yqiX-RBAM_022280___yqiX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03569___yqiX-RBAM_022280___yqiX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03569___yqiX
# 2: RBAM_022280___yqiX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 783
# Identity:     598/783 (76.4%)
# Similarity:   598/783 (76.4%)
# Gaps:          30/783 ( 3.8%)
# Score: 2241.0
# 
#
#=======================================

BSNT_03569___      1 ATGAAAAAATGGCTCTTATTACTTGTAGCTGCC---TGCATTACCTTTGC     47
                     |||||.||||||||.||..||   .||||||||   ||.||.||||||||
RBAM_022280__      1 ATGAAGAAATGGCTGTTGGTA---TTAGCTGCCGCATGTATCACCTTTGC     47

BSNT_03569___     48 ATTATCTGCTTGCGGCTCAAGCAATTCAGGTTCAGAAGGCGGCAAGAAAA     97
                     ..|.||.||||||||.|||.||||||||||.|||||.|||||.|||||.|
RBAM_022280__     48 GCTGTCCGCTTGCGGATCAGGCAATTCAGGCTCAGAGGGCGGAAAGAACA     97

BSNT_03569___     98 AATTAATTATGGGTACTTCGGCGGATTACAAACCGTTTGAATATAAAGAA    147
                     |..|.|||||||||||.|||||.||.||.|||||.||||||||||||||.
RBAM_022280__     98 AGCTGATTATGGGTACATCGGCTGACTATAAACCATTTGAATATAAAGAC    147

BSNT_03569___    148 GGCGATAATATTGTCGGCTTTGATGTAGAGTTGGCAAAAGCTCT-GGCAA    196
                     ||||||.|.||...|||.|||||.||.||..||||||||||||| |||||
RBAM_022280__    148 GGCGATCAGATCACCGGGTTTGACGTTGATCTGGCAAAAGCTCTGGGCAA    197

BSNT_03569___    197 AGAAGGCAGGCTATGAAATTGAAGTGCAGGATATGGACTTCAACAGCTTA    246
                     | |||.|.||||||||..||||.||||||||.|||||||||||||||.|.
RBAM_022280__    198 A-AAGACTGGCTATGACGTTGAGGTGCAGGACATGGACTTCAACAGCCTG    246

BSNT_03569___    247 ATTACAGCGCTT-AAATCAAAACAGGTGGATCTCGTTCTGTCAGGAATGA    295
                     |||||||| ||| ||.||.||.|||||.|||.|..||.|.||.|||||||
RBAM_022280__    247 ATTACAGC-CTTGAAGTCCAAGCAGGTAGATATGATTTTATCTGGAATGA    295

BSNT_03569___    296 CACCAACGCCTGAGCGTAAAAAACAAGTTGATTTTTCAGATGTGTATTAC    345
                     ||||.||.||.||.||.|||||.||||||||||||||.|||.|.|||||.
RBAM_022280__    296 CACCTACACCGGAACGGAAAAAGCAAGTTGATTTTTCTGATATTTATTAT    345

BSNT_03569___    346 ACAGCGAACCATATGATTGTCAGCAAAAAAGACAGCGGCATTCAATCTTT    395
                     ||.||.|||.|||||||.||.|..|||||.|..|||.||||..||||..|
RBAM_022280__    346 ACTGCTAACAATATGATCGTTACGAAAAAGGGAAGCAGCATGAAATCCCT    395

BSNT_03569___    396 GAAAGACCTGAAAGGAAAAACAGTTGGCGTTCAGCTTGGCTCTATTCAGG    445
                     |||.||.||||||||.|||||.||.||.||||||||.|||||.|||||.|
RBAM_022280__    396 GAATGATCTGAAAGGCAAAACCGTCGGTGTTCAGCTCGGCTCCATTCAAG    445

BSNT_03569___    446 AAGAGAAGGGGAAAGAGCTTTCTCCGGAATATGGTTTTAAAACA----GA    491
                     |.||.||.||.||..||||..||.||.||||.||||||    ||    ||
RBAM_022280__    446 AGGAAAAAGGCAAGAAGCTCGCTTCGAAATACGGTTTT----CAGCTCGA    491

BSNT_03569___    492 AGACCGCAACAGAATTTCTGATTT----GGTGCAGGAAATCAAATCTGAC    537
                     ||||||||||.|.||.||.||.||    |    |.||.||||||||.|..
RBAM_022280__    492 AGACCGCAACCGGATCTCAGACTTAACCG----AAGAGATCAAATCCGGG    537

BSNT_03569___    538 CGCTTCGATGCCGCGATTATTGAAGACATTGTTGCAGAAGGGTATTTCAA    587
                     ||.||.||||||||||||||.||||||||.||.|||.||||.|||||||.
RBAM_022280__    538 CGTTTTGATGCCGCGATTATCGAAGACATCGTAGCACAAGGCTATTTCAG    587

BSNT_03569___    588 ATCAAATGATGACCTGCAAGGCTTTGTGATTC--CTGATGCGAAAGCGGA    635
                     .||||||.|.||.|||||.|||||||.|  ||  |.|||||||||.|.||
RBAM_022280__    588 TTCAAATCAAGATCTGCAGGGCTTTGCG--TCAGCAGATGCGAAATCAGA    635

BSNT_03569___    636 AGAAGCCGGTTCAGCAATTGCTTTCAGAAAGGACAGTGAACTGACAGACA    685
                     .|||.|.||.||.||.|||||.|||.|.||.||||||||.|||||||..|
RBAM_022280__    636 CGAATCGGGCTCCGCGATTGCGTTCCGCAAAGACAGTGATCTGACAGCGA    685

BSNT_03569___    686 AATTCAATAAAGCGCTCAAGGAAATGGAAGATAACGGAGAGCTTGAGAAA    735
                     |.|||||.||||||||.||.||||||||..|.||||||||..|.||.|||
RBAM_022280__    686 AGTTCAACAAAGCGCTGAAAGAAATGGAGAAAAACGGAGAAATCGAAAAA    735

BSNT_03569___    736 TTGAAGAAAAAATGGTTCACTGGCGAGAAGTAA    768
                     .|||||||||||||||||||...||||||.|||
RBAM_022280__    736 CTGAAGAAAAAATGGTTCACCAACGAGAAATAA    768


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03569 and RBAM_022280

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
