Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03562 and RBAM_022240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:49
# Commandline: needle
# -asequence dna-align/BSNT_03562___yqjB.1.9828.seq
# -bsequence dna-align/RBAM_022240___yqjB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03562___yqjB-RBAM_022240___yqjB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03562___yqjB-RBAM_022240___yqjB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03562___yqjB
# 2: RBAM_022240___yqjB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 549
# Identity: 402/549 (73.2%)
# Similarity: 402/549 (73.2%)
# Gaps: 36/549 ( 6.6%)
# Score: 1424.5
#
#
#=======================================
BSNT_03562___ 1 ATGCGTTTTTTCTTATGTTCGATTTTTA-------TGATGATTTCACCGA 43
|||||.|||||.|| |||.|.| ||.||||.||.|||.
RBAM_022240__ 1 ATGCGATTTTTTTT-------ATTGTCAGCCGCCCTGCTGATGTCTCCGC 43
BSNT_03562___ 44 TTTGGCCGCTCGGCGAAAATCCGCTGCCGGGTGATCCATATGTTATTGTC 93
||||||||||.||||.|||.||..||||||||||.||.|||.||||.|||
RBAM_022240__ 44 TTTGGCCGCTTGGCGCAAACCCTTTGCCGGGTGACCCTTATATTATCGTC 93
BSNT_03562___ 94 AA-CAAGCGAACAAATGAACTTGCTGTTATCCTCGACAACAGAGTAGAAG 142
|| .|||| .|||||||..|||||||||.|....||.|||.||.||.|||
RBAM_022240__ 94 AATAAAGC-CACAAATGCGCTTGCTGTTGTGAAGGATAACCGAATACAAG 142
BSNT_03562___ 143 GCGTGTAT-AGTGTGGCGACTGGAAAAACAGATGATTTGACGCCTGAAGG 191
||.|.||| || ||||||||.||||||||.||||||||||||||||||||
RBAM_022240__ 143 GCATTTATCAG-GTGGCGACGGGAAAAACGGATGATTTGACGCCTGAAGG 191
BSNT_03562___ 192 AGAGTTTTCGGTAACGGTAAAAGCGGAAAATCCTTACTACAGAAAGAAAA 241
|||.|||.||||||||||.|||||.|..|||||.||.|||.|.|||||||
RBAM_022240__ 192 AGAATTTACGGTAACGGTCAAAGCCGTCAATCCGTATTACCGGAAGAAAA 241
BSNT_03562___ 242 ATATTGAAGGGGGATCTCCTGACAACCCGCTTGGGGCCAGATGGATCGGA 291
||.|.||.||.||..|.||.||.||||||||.||.|.|.|.||||||||.
RBAM_022240__ 242 ATGTAGAGGGAGGCGCGCCGGAAAACCCGCTCGGCGTCCGCTGGATCGGC 291
BSNT_03562___ 292 TTTGACGCGAAAGGAACGGACGGGCGGATTTATGGAATTCATGGGACAAA 341
|||||||||||||||||.|||||..||||.||.||.|||||.||.|||||
RBAM_022240__ 292 TTTGACGCGAAAGGAACCGACGGCAGGATATACGGCATTCACGGAACAAA 341
BSNT_03562___ 342 CCGAGAGGA----ATCAGTAGGGAAATTTGTGTCTAACGGCTGTATACGT 387
|.||||.|| ||| |||...||||||||.||||||||.||.|||
RBAM_022240__ 342 CAGAGAAGAGCTGATC----GGGGGGTTTGTGTCAAACGGCTGCATCCGT 387
BSNT_03562___ 388 ATGCATAACGATGAGGTCGTTCATTTGTTTCAAACG----ATACCAGTAG 433
|||.|.|||...||.|||.|.|.|.| |||| || ||.||....|
RBAM_022240__ 388 ATGAAAAACCGGGATGTCATCCGTAT-TTTC---CGGATTATCCCTCCCG 433
BSNT_03562___ 434 GAACGAGAGTGCTGATCACGGACGACAACCGCTCTTTTGAGGAGATTGCC 483
||||||.|||..||||.||..|.||.||||||||.||.|||||.|||||.
RBAM_022240__ 434 GAACGAAAGTATTGATTACAAAAGAAAACCGCTCATTCGAGGACATTGCA 483
BSNT_03562___ 484 ATCGAGCATAAAGCTCTGATAAAAAAGCAGGATATTCCCATTG-AATAA 531
||.||||..|||||.||.|||||||||||||| |..|||.||| |||.|
RBAM_022240__ 484 ATAGAGCGGAAAGCCCTCATAAAAAAGCAGGA-AACCCCCTTGCAATGA 531
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