Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03511 and RBAM_021740

See Amino acid alignment / Visit BSNT_03511 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:46
# Commandline: needle
#    -asequence dna-align/BSNT_03511___nudF.1.9828.seq
#    -bsequence dna-align/RBAM_021740___nudF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03511___nudF-RBAM_021740___nudF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03511___nudF-RBAM_021740___nudF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03511___nudF
# 2: RBAM_021740___nudF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 563
# Identity:     440/563 (78.2%)
# Similarity:   440/563 (78.2%)
# Gaps:          10/563 ( 1.8%)
# Score: 1697.0
# 
#
#=======================================

BSNT_03511___      1 ---ATGAAATCA-TTAGAAGAAAAAACAATTGCCAAAGAACAGATCT-TT     45
                        |||||| || |||||||||||||||.||||.|||.||.|..|.| |.
RBAM_021740__      1 ATGATGAAA-CATTTAGAAGAAAAAACACTTGCGAAAAAAAAACTGTATG     49

BSNT_03511___     46 TCGGGTAAAGTCATTGATCTTTATGTCGAGGATGTAGAGCTGCCAAACGG     95
                     .|||| ||||||||.||||||||..|.||||||||||||||.||.|||||
RBAM_021740__     50 ACGGG-AAAGTCATAGATCTTTACTTAGAGGATGTAGAGCTCCCGAACGG     98

BSNT_03511___     96 CAAAGCCAGTAAACGTGAAATTGTGAAACACCCTGGAGCTGTAGCGGTAC    145
                     .|||.|.||.||.||.|||||.||.|||||.||.|||||.||.||.||||
RBAM_021740__     99 AAAAACAAGCAAGCGGGAAATCGTCAAACATCCGGGAGCGGTGGCCGTAC    148

BSNT_03511___    146 TAGCCGTCACAGATGAAGGGAAAATCATCATGGTCAAACAATTCCGTAAG    195
                     |.||.||.||.||.|||||.||||||||..||||.||.||.|||.|.|||
RBAM_021740__    149 TTGCGGTAACCGAAGAAGGAAAAATCATTTTGGTGAACCAGTTCAGAAAG    198

BSNT_03511___    196 CCGCTTGAGCGGACGATCGTTGAAATTCCGGCCGGTAAGCTTGAAAAAGG    245
                     |||||.||.|||||.||||||||||||||||||||.|||||||||||.||
RBAM_021740__    199 CCGCTGGAACGGACAATCGTTGAAATTCCGGCCGGGAAGCTTGAAAAGGG    248

BSNT_03511___    246 TGAGGAGCCGGAGTATACGGCACTTCGGGAACTTGAAGAGGAAACCGGTT    295
                     .||.||||||||..|||||||..|..|.||.||.||.||.|||||.||.|
RBAM_021740__    249 GGAAGAGCCGGAACATACGGCGTTAAGAGAGCTCGAGGAAGAAACGGGAT    298

BSNT_03511___    296 ATACAGCAAAAAAACTGACAAAAATAACTGCGTTTTATACATCACCCGGA    345
                     ||||.||..|||...||||.|||||.||.||.|||||||||||||||||.
RBAM_021740__    299 ATACGGCGGAAACCTTGACGAAAATCACCGCTTTTTATACATCACCCGGG    348

BSNT_03511___    346 TTTGCAGATGAGATCGTTCACGTTTTTCTTGCTGAGGAGCTTTCTGTGCT    395
                     |||||.|||||.|||||.||..|.||||||||.||.|.||||||...|||
RBAM_021740__    349 TTTGCTGATGAAATCGTGCATCTCTTTCTTGCGGAAGGGCTTTCGCCGCT    398

BSNT_03511___    396 TGAAGAAAAACGGGAGCTTGATGAGGACGAGTTTGTTGAAGTGATGGAGG    445
                     .|||||||||||.|||||.||||||||.||.|||||.|||||.|||.|||
RBAM_021740__    399 GGAAGAAAAACGAGAGCTGGATGAGGATGAATTTGTCGAAGTCATGCAGG    448

BSNT_03511___    446 TGACGCTTGAAGATGCGCTAAAGCTGGTTGAATCGCGTGAAGTATATGAT    495
                     |.|||||||||||.||..|.||||||.|||||||.||....||.|||||.
RBAM_021740__    449 TCACGCTTGAAGAGGCCGTGAAGCTGATTGAATCCCGCAGGGTGTATGAC    498

BSNT_03511___    496 GCTAAAACAGCCTACGCGATTCAGTATCTTCAACTGAAAGAAGCGCTCCA    545
                     ||.|||||.||.|||||||||||||||||.||.||||||||||||||..|
RBAM_021740__    499 GCAAAAACGGCGTACGCGATTCAGTATCTCCAGCTGAAAGAAGCGCTGAA    548

BSNT_03511___    546 AGCACAAAAATGA    558
                     .|   ||||||||
RBAM_021740__    549 GG---AAAAATGA    558


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.