Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03510 and RBAM_021730
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_03510.1.9828.seq
# -bsequence dna-align/RBAM_021730___yqxK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03510-RBAM_021730___yqxK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03510-RBAM_021730___yqxK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03510
# 2: RBAM_021730___yqxK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1205
# Identity: 850/1205 (70.5%)
# Similarity: 850/1205 (70.5%)
# Gaps: 82/1205 ( 6.8%)
# Score: 2879.5
#
#
#=======================================
BSNT_03510 1 ATGAAAAAGATTTACGCGGATTTGCACATTCATATCGGCCGGACCTTTAC 50
|||||||..||.||.||||||.||||.||||||||||||||.||||.|||
RBAM_021730__ 1 ATGAAAACCATCTATGCGGATCTGCATATTCATATCGGCCGCACCTATAC 50
BSNT_03510 51 AGGAAGGGCTGTCAAAATAACAGGCGCCAAAACATTAACGCTGGACAGAA 100
.||||...|.||||||||.||.||.||||||||.||.||||||.||.|.|
RBAM_021730__ 51 GGGAAAACCGGTCAAAATCACCGGGGCCAAAACGTTGACGCTGCACCGGA 100
BSNT_03510 101 TTTTGGTTGAAGCCAGTGAACATAAAGGAATTGAACTCCTCGGCATTATC 150
||||.|..|||||||||||....||.|||||||||||..|.|||||||||
RBAM_021730__ 101 TTTTAGAAGAAGCCAGTGAGGGGAAGGGAATTGAACTATTGGGCATTATC 150
BSNT_03510 151 GACTGTCATTCTCCGGAAGTCAT--------TCTGGAGC------TTGAG 186
|||||.|||||.||||||||||| || |||| ||||.
RBAM_021730__ 151 GACTGCCATTCCCCGGAAGTCATAGAAGAAATC--GAGCGCGGAATTGAT 198
BSNT_03510 187 GAAGGCATTTCATCTGGAAAATATCGCGAGCTTGACGGGGGAGGAATCCG 236
|||||| |.|||.||.|||||..|.|..||.||.|||||
RBAM_021730__ 199 GAAGGC------------AGATACCGTGAGCTGAAAGAAGGCGGCATCCG 236
BSNT_03510 237 TTATCGCAGCACGACTCTTTTATTGGGGAGCGAGCTGGAGATTTATGATG 286
.|||||.|..|||||.|||.|.|||||.||.|||||.||.||.||||||.
RBAM_021730__ 237 GTATCGGAATACGACGCTTCTGTTGGGCAGTGAGCTTGAAATCTATGATC 286
BSNT_03510 287 AAGCTTGTAGCGGACCGATCCATGTGCTCGTATTTATGCCGACGTTGGCT 336
|..|.||..||||.|||||.||.||.|||||.|||||||||.|..|.||.
RBAM_021730__ 287 ACACATGCCGCGGGCCGATTCACGTTCTCGTCTTTATGCCGTCTCTTGCC 336
BSNT_03510 337 GATATGAAACAGTTTTCAAACTGGCTGTCAGCCCGGCTGAAAAATATTCA 386
||.|||||...||||||..|.|||||..||....||||.||||||||.||
RBAM_021730__ 337 GAAATGAAGATGTTTTCTGAGTGGCTTGCAAAAAGGCTTAAAAATATCCA 386
BSNT_03510 387 TTTAAGCTCGCAGCGGATTTATGAAACGGGCTTAAACCTGCA----AAAA 432
|.|.||.||.|||||.|||||||||||.||.||.||.||.|| ||||
RBAM_021730__ 387 TCTCAGTTCCCAGCGCATTTATGAAACCGGTTTGAATCTTCAAAGGAAAA 436
BSNT_03510 433 AAAGTGCAGGATATGGGCGGCTTGTTTATCCCCGCCCATATCTTTACGCC 482
.|| ||||..|||||||..|||||||.|||||||||||.||.||.||
RBAM_021730__ 437 CAA----AGGAATTGGGCGGGCTGTTTATTCCCGCCCATATGTTCACCCC 482
BSNT_03510 483 GCATAAAAGCTTATATGGAAAAGGGGTTAAATCAAGCTTAACTGAGGTTT 532
||||||||||.|.||.|||||||||||||.|||....||.||.|||||||
RBAM_021730__ 483 GCATAAAAGCCTGTACGGAAAAGGGGTTAGATCTTCTTTGACAGAGGTTT 532
BSNT_03510 533 TTGATCCATCTATGATAGACGCGGTGGAGCTTGGATTAAGCTGTGATACA 582
|.||.||.||..|.||.|||||||.|||.||.||||||||||||||.||.
RBAM_021730__ 533 TCGACCCGTCGCTCATTGACGCGGCGGAACTCGGATTAAGCTGTGACACC 582
BSNT_03510 583 GACATGGCATCACACGTATC-GCAATTGAATCCGTATCCTTTTTTAACAA 631
||||||||.||.|..|||.| |.|.||| ||||||||.|.||||||||||
RBAM_021730__ 583 GACATGGCTTCGCGGGTAGCAGAACTTG-ATCCGTATACATTTTTAACAA 631
BSNT_03510 632 ATTCTGATGCGCATTCGTTGGGGAAAATCGGCAGAGAATATAATGAACTA 681
||||||||||||||||.||.||.||||||||||||||||||||||||
RBAM_021730__ 632 ATTCTGATGCGCATTCCTTAGGAAAAATCGGCAGAGAATATAATGAA--- 678
BSNT_03510 682 TATG-----TGCAGTCAGCTGATTTTACTGAATTTGCTCTTGCATT-AAA 725
||| |..|| .|||..||||.||.||||||.|.||.||.|| |||
RBAM_021730__ 679 -ATGCTTCTTAAAG-AAGCGAATTTCACGGAATTTTCGCTGGCTTTAAAA 726
BSNT_03510 726 GGGACAAGATGACAGGAAAATTATCGCAAATTATGGCTTGGACCCGTTAT 775
|||| |.||.|..||.|||||.|..||.|||||.||..||.|||||....
RBAM_021730__ 727 GGGA-AGGACGGAAGAAAAATCACGGCGAATTACGGGCTGAACCCGAAGC 775
BSNT_03510 776 TGGGGAAATATTATCAGACCGCTTGCGAAGCG-TGCGGAGAGCCTGCTGT 824
|.|||||.|||||.|.|||.||||||| |.|| |||||....||.|.||.
RBAM_021730__ 776 TCGGGAAGTATTACCGGACGGCTTGCG-ACCGCTGCGGCCGCCCGGTTGA 824
BSNT_03510 825 AAGCGGGGAAACAGCGTGCGCGAATTGC----GGAAATGCCAGATTTACC 870
||..||.|..||.|..||..||.|.||| ||||| |.|.|.||.
RBAM_021730__ 825 AAAAGGAGCTACCGTATGTCCGGAGTGCGGGGGGAAA----ACAATGACA 870
BSNT_03510 871 AAGGGAGTCAGCGAAAGATTGCGTGAATTGAGTGATC--------AGCTT 912
||.||.|||||.|||.|..||...|||.||||.|.|| |||
RBAM_021730__ 871 AAAGGGGTCAGTGAACGGCTGGAGGAACTGAGCGGTCCGAAAAAAAGC-- 918
BSNT_03510 913 GAAGTTCGCGTCCCGCGTCCGCGATATGTACATCAGATCCCGCTGCAATT 962
|||||.|||||.||||..|||.|.|||||.|||||||||||.||
RBAM_021730__ 919 ------CGCGTGCCGCGGCCGCCGTATATTCATCAAATCCCGCTGCAGTT 962
BSNT_03510 963 TGTTCCGGGTGTAGGCCCGAAAACGCTGGACAAACTAAAAAAAGCCTTCG 1012
..||||.||.||.||.|||||||||.|.||.|||||.||....||.||||
RBAM_021730__ 963 CATTCCCGGGGTCGGGCCGAAAACGTTAGAAAAACTGAAGCGGGCTTTCG 1012
BSNT_03510 1013 CAACAGAAATGGCTGTTCTTCATGAGGCTGC-AGAAGAAGATTTGGCTCG 1061
..||.||.|||||..||||.|||.|||| || ||||||.||.|||||.||
RBAM_021730__ 1013 GGACGGAGATGGCGATTCTACATCAGGC-GCAAGAAGAGGAATTGGCGCG 1061
BSNT_03510 1062 CGTTGTCCCGCCGAAAACCGCGGCGCTTA-TCGTAAAAGCGAGATCCGGA 1110
.||.||||.|||.||||..|||||..|.| ||.| ||||||.|..||||.
RBAM_021730__ 1062 TGTCGTCCAGCCTAAAATAGCGGCTGTCATTCAT-AAAGCGCGCACCGGG 1110
BSNT_03510 1111 AAACT-GGAATTGAAAGCCGGAGGAGGAGGAACCTACGGTAAAATTAAAC 1159
.|.|| |...||| |.|||||.||.|||||.||.|||||.|.|||.||.|
RBAM_021730__ 1111 CAGCTCGTCCTTG-AGGCCGGGGGCGGAGGGACGTACGGCAGAATCAAGC 1159
BSNT_03510 1160 CGTGA 1164
|||.|
RBAM_021730__ 1160 CGTAA 1164
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