Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03506 and RBAM_021690
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:45
# Commandline: needle
# -asequence dna-align/BSNT_03506___mleN.1.9828.seq
# -bsequence dna-align/RBAM_021690___mleN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03506___mleN-RBAM_021690___mleN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03506___mleN-RBAM_021690___mleN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03506___mleN
# 2: RBAM_021690___mleN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1421
# Identity: 1077/1421 (75.8%)
# Similarity: 1077/1421 (75.8%)
# Gaps: 28/1421 ( 2.0%)
# Score: 3993.0
#
#
#=======================================
BSNT_03506___ 1 TTGAAGGATGTAAGATTGCCAACACTATTTGAAATTATTATTGTACTA-- 48
.||||.||.||.||||||||||...||||.|||||||||||..||.||
RBAM_021690__ 1 GTGAAAGAGGTCAGATTGCCAAATTTATTGGAAATTATTATCTTATTATT 50
BSNT_03506___ 49 --GGAGTATTTTTAGCACTTGTTCTATCGTTTACAGTCTTTCTCGACTTG 96
|| ||||||||.|||||..||||.||.|||||.|||.|.|||.||
RBAM_021690__ 51 CGGG----TTTTTAGCGCTTGTCTTATCATTCACAGTGTTTTTAGACCTG 96
BSNT_03506___ 97 CCGATACAGCTGGCGCTTTTTGTTTCATGGTTTATTGCAATGCTTTTAGG 146
|||||.|||||.||.||.|||.|.||.||||||||.||.||..||.|.||
RBAM_021690__ 97 CCGATCCAGCTTGCTCTATTTATATCCTGGTTTATCGCTATTATTCTCGG 146
BSNT_03506___ 147 TATAAGACTCGGTTATTCTTATAAAGATTTACAAAATGCGATTGTACA-T 195
..|.||.||.||..||||.||||||||.||.||...|.||||||| || .
RBAM_021690__ 147 AGTCAGGCTGGGACATTCATATAAAGACTTGCAGGCTTCGATTGT-CACC 195
BSNT_03506___ 196 GGAATATCAAATGGCCTTGAAGCCGTACTGATTCTCGTTTCAGTTGGGGC 245
||.||||||||.||.||||||||.||..|||||||.|||||.||.||.||
RBAM_021690__ 196 GGGATATCAAACGGTCTTGAAGCGGTTTTGATTCTTGTTTCGGTCGGTGC 245
BSNT_03506___ 246 GCTCATCGGAACATGGATTGCCGGAGGCGTTGTGCCGACTTTGATTTATT 295
|||.|||||.||||||||||||||.||||||||||||||.||.|||||||
RBAM_021690__ 246 GCTTATCGGGACATGGATTGCCGGCGGCGTTGTGCCGACGTTAATTTATT 295
BSNT_03506___ 296 ACGGACTGGAATTTATTCACCCAAGT-ATCTTTT--TACTGGCAACGTTA 342
|.||..|.||.||||||.|.|| | ||.|||| |.||.||.||.||.
RBAM_021690__ 296 ATGGTTTAGAGTTTATTAATCC---TCATGTTTTCCTGCTTGCTACATTG 342
BSNT_03506___ 343 ATTATTTGTTCCATTATGTCTGTGGCAACAGGAACGTCATGGGGAACAGT 392
.|.|||||||||.|||||||.||.||.||.||||||||.||||||||.||
RBAM_021690__ 343 GTGATTTGTTCCGTTATGTCCGTTGCGACCGGAACGTCGTGGGGAACCGT 392
BSNT_03506___ 393 CGGAACTGCCGGCATTGCCATGATCGCAATTGGAGAGGGTTTAGGCATTC 442
.||.||.||.||.||.||||||.|.||.||.|||||.||..|.||.||.|
RBAM_021690__ 393 GGGGACCGCGGGGATCGCCATGGTTGCCATCGGAGAAGGAATGGGTATAC 442
BSNT_03506___ 443 CGCTTCCTCTAGTAGCGGGAGCTATTCTTTCAGGTGCTTATTTCGGGGAC 492
|||||||..|.||.||||||||..||.|.||.||.|||||.|||||.|||
RBAM_021690__ 443 CGCTTCCGATCGTGGCGGGAGCCGTTTTGTCCGGCGCTTACTTCGGAGAC 492
BSNT_03506___ 493 AAGCTGTCTCCGCTGTCTGACAGTACAGTTCTAGCTTCTTCACTATCAAA 542
|||||.||.|||||||||||||||||.||.||.||.||..|.||.||.||
RBAM_021690__ 493 AAGCTTTCACCGCTGTCTGACAGTACGGTGCTTGCCTCCACGCTTTCTAA 542
BSNT_03506___ 543 AGTCGATGTATTGGCTCACGTGAGAGCAATGCTTTATTTATCAATACCTG 592
.||.|||||..||.|.|||||.|||||.|||.|.|||.|.|||||.||..
RBAM_021690__ 543 GGTGGATGTGCTGTCACACGTCAGAGCGATGATGTATCTGTCAATTCCGT 592
BSNT_03506___ 593 CTTATGTCATTACAGCTATACTCTTTACAGTTGTTGGATTTATGTACGGC 642
|.|||.|.|||||.||.||.||.|||||.||....||||||||.||||||
RBAM_021690__ 593 CCTATATTATTACGGCCATTCTGTTTACCGTAACGGGATTTATATACGGC 642
BSNT_03506___ 643 GGGAAAAATATTGATCTTGATAAAGTTGAATTCTTAAAATCATCTTTGCA 692
||.||||||||||||||||..|||||.|||||.||||||||.||.|||||
RBAM_021690__ 643 GGAAAAAATATTGATCTTGGCAAAGTGGAATTTTTAAAATCTTCATTGCA 692
BSNT_03506___ 693 AAACACGTTTGACATTCATATTTGGATGCTGATCCCGGCAGTTGTCGTCA 742
.||.|||||||||||||||||.||||||||.||.|||||.|||||||||.
RBAM_021690__ 693 GAAAACGTTTGACATTCATATATGGATGCTCATTCCGGCTGTTGTCGTCG 742
BSNT_03506___ 743 TAG----TCTTATTGGCGATGAAAAAGCCATCTATGCCGGTTATCGTAAT 788
|.| |||.||| .||||||||||.||||||||.||||||||.||
RBAM_021690__ 743 TTGTCCTTCTGATT----TTGAAAAAGCCGTCTATGCCCGTTATCGTCAT 788
BSNT_03506___ 789 TGGCGCTTTACTCGGTGCAATCTGGGCTGTTGTTTTCCAAGGAATGGATA 838
.||.|||||.||.||.||||||||||||...||.||.||.||||||.||.
RBAM_021690__ 789 CGGTGCTTTGCTTGGCGCAATCTGGGCTTCCGTCTTTCAGGGAATGAATT 838
BSNT_03506___ 839 TTGCCCATGCGATTGCAACTGCTTACAACGGTTTCTCTATTAAAACTGAT 888
|||||..|||.||.||.||||||||.||.|||||.||.||||||||.||.
RBAM_021690__ 839 TTGCCAGTGCCATCGCGACTGCTTATAATGGTTTTTCCATTAAAACGGAC 888
BSNT_03506___ 889 GTTGAATTTTTGAACGGCTTGTTAAACCGCGGTGGAATTGTCGGTATGCT 938
||.||||||||.||||||.|||||||||||||.||.|||..|||||||||
RBAM_021690__ 889 GTCGAATTTTTAAACGGCCTGTTAAACCGCGGAGGCATTACCGGTATGCT 938
BSNT_03506___ 939 TGATTCTCTCGTCGTCATCATCTTTGGCCTTGGTTTTGGCGGTCTGCTTG 988
.|||.|..|.|||||.|||.|.||.||.|||||||||||.||..|.||||
RBAM_021690__ 939 GGATACGTTAGTCGTTATCCTGTTCGGTCTTGGTTTTGGAGGAATTCTTG 988
BSNT_03506___ 989 AGAAACTCGGCGTGTTAAAAGTCATTGTTTCAACGTTTGAAAAGAAATTA 1038
||||.||||||||.||||||||.|||||.|||||.|||||.||.||..|.
RBAM_021690__ 989 AGAAGCTCGGCGTATTAAAAGTGATTGTCTCAACTTTTGAGAAAAAGCTG 1038
BSNT_03506___ 1039 ACTTCAGCCGGCAATGTCACATTGTCTACACTGATCGTAGCGTTTTTAGC 1088
||..||.|.||.|||||.||..|.||.|||.|||||||.||..||||||.
RBAM_021690__ 1039 ACCACACCGGGAAATGTGACGCTTTCGACATTGATCGTCGCCCTTTTAGG 1088
BSNT_03506___ 1089 GAACATCTTCGGCTGTGCGATGTATGTATCTCTTATTTTGACTCCGAAAA 1138
.|||||.|||||||||||||||||.||.||..|.||..||||.|||||||
RBAM_021690__ 1089 AAACATTTTCGGCTGTGCGATGTACGTGTCATTGATCCTGACGCCGAAAA 1138
BSNT_03506___ 1139 TTATGGAAGACAGCTATGATCGCTTGCATCTGGACAGAAGAGTGTTATCA 1188
|.|||||..||||.||||||....||.|.||.|||||||||||.|||||.
RBAM_021690__ 1139 TCATGGAGAACAGTTATGATAAACTGAAACTTGACAGAAGAGTTTTATCC 1188
BSNT_03506___ 1189 CGTAACTCAGAGGTCGGGGGAACATTGACTTCGGGGATGGTACCTTGGTC 1238
||.|||.|||||||.||.||.||..|.|||||.||||||||.||.|||||
RBAM_021690__ 1189 CGGAACGCAGAGGTGGGCGGCACGCTTACTTCAGGGATGGTGCCGTGGTC 1238
BSNT_03506___ 1239 TGATAATGGGATTTACATGGCTGGTATTTTAGGTGTTTCTACCTTCTCTT 1288
||||||.||.||.||.|||||.||.|||.|.||.||.||.||.||.||||
RBAM_021690__ 1239 TGATAACGGCATCTATATGGCCGGCATTCTCGGCGTATCCACATTTTCTT 1288
BSNT_03506___ 1289 ATCTGCCGTTTATGTGGCTCAGTTTTGTAGCAATAGGTCTTGCAATTATC 1338
||||||||||.||||||||||||||||||.|.||.||.||.|||||..|.
RBAM_021690__ 1289 ATCTGCCGTTCATGTGGCTCAGTTTTGTATCTATCGGACTGGCAATATTG 1338
BSNT_03506___ 1339 TATGGTTATACAGGAAAATTTATATGGTATACGAAA-AACAATACAGTT- 1386
||.||.||.||.||.|||||.||.|||||.|||||| ||.|||.| ||
RBAM_021690__ 1339 TACGGATACACGGGGAAATTCATTTGGTACACGAAAGAAAAATCC--TTG 1386
BSNT_03506___ 1387 AAAGCCGAAAAACTAGGCTAA 1407
.||.|..|||||.|.||.||.
RBAM_021690__ 1387 CAATCTCAAAAATTGGGTTAG 1407
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