Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03462 and RBAM_021400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:42
# Commandline: needle
# -asequence dna-align/BSNT_03462___ribA.1.9828.seq
# -bsequence dna-align/RBAM_021400___ribA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03462___ribA-RBAM_021400___ribA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03462___ribA-RBAM_021400___ribA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03462___ribA
# 2: RBAM_021400___ribA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1217
# Identity: 941/1217 (77.3%)
# Similarity: 941/1217 (77.3%)
# Gaps: 40/1217 ( 3.3%)
# Score: 3608.0
#
#
#=======================================
BSNT_03462___ 1 GTGTTTCATCCGATAGAAGAAGCACTGGACGCTTTAAAAAAAGGCGAAGT 50
.|||||||||||||||||||.||..|.||.||..|.||||||||.|||||
RBAM_021400__ 1 ATGTTTCATCCGATAGAAGAGGCGTTAGAGGCGCTGAAAAAAGGTGAAGT 50
BSNT_03462___ 51 CATCATCGTTGTAGATGATGAAGACAGAGAAAATGAAGGAGACTTTGTGG 100
||||||.|||||.||||||||||||||||||||.||||||||.||.||.|
RBAM_021400__ 51 CATCATTGTTGTCGATGATGAAGACAGAGAAAACGAAGGAGATTTCGTAG 100
BSNT_03462___ 101 CTCTTGCCGAGCATGCAACGCCGGAAGTCATTAACTTTATGGCGACACAT 150
|..|.||.||||||||.|||||||||||..|.||.|||||||||||.|||
RBAM_021400__ 101 CGTTGGCTGAGCATGCCACGCCGGAAGTGGTGAATTTTATGGCGACCCAT 150
BSNT_03462___ 151 GGGAGAGGACTGATCTGCACGCCGCTCAGTGAGGAAATCGCAGACAGGCT 200
||.|||||.|||||||||||||||||...|||.||.|||||.|.|.||||
RBAM_021400__ 151 GGTAGAGGCCTGATCTGCACGCCGCTGTCTGAAGACATCGCCGGCCGGCT 200
BSNT_03462___ 201 TGATCTTCACCCTATGGTGGAGCATAATACAGATTCTCACCACACTGCAT 250
.|||||||||||.|||||.||.||||||||.||.||.||..|.||.||.|
RBAM_021400__ 201 GGATCTTCACCCGATGGTCGATCATAATACGGACTCACATGAGACCGCGT 250
BSNT_03462___ 251 TTACCGTAAGCATAGACCATCG--TGAAACGAAGACAGGTATCAGCGCTC 298
||||.||.||.||.|||||..| || ||.||.||.||.||||||||.|
RBAM_021400__ 251 TTACGGTCAGTATTGACCACAGGCTG--ACAAAAACGGGCATCAGCGCGC 298
BSNT_03462___ 299 AAGAAAGATCTTTTACCGTTCAAGCATTGCTGGAC--AGCACATCCGTGC 346
|.|||.||||.||||||.||||.||..||.||.|| || .|||.|||
RBAM_021400__ 299 AGGAACGATCCTTTACCATTCAGGCGCTGTTGAACGAAG--AATCTGTG- 345
BSNT_03462___ 347 CATCT---GATTTTCAGCGTCCGGGGCACATTTTTCCACTGATTGCGAAA 393
||| |||||||||||||||||.||||||||.||..|.||.||.|||
RBAM_021400__ 346 --TCTGACGATTTTCAGCGTCCGGGCCACATTTTCCCCTTAATCGCAAAA 393
BSNT_03462___ 394 AAAGGAGGTGTCCTGAAAAGAGCGGGCCATACAGAAGCTGCTGTTGATCT 443
||||||||.||||||||..|.||.||||||||.|||||.||.|||||.||
RBAM_021400__ 394 AAAGGAGGAGTCCTGAAGCGGGCCGGCCATACGGAAGCAGCCGTTGACCT 443
BSNT_03462___ 444 TGCTGAAGCTTGCGGATCTCCAGGAGCCGGCGTCATTTGTGAAATTATGA 493
|||..||||.||||||||||..|||||.||||||||||||||||||||||
RBAM_021400__ 444 TGCAAAAGCCTGCGGATCTCAGGGAGCGGGCGTCATTTGTGAAATTATGA 493
BSNT_03462___ 494 ATGAAGACGGAACGATGGCGAGAGTGCCTGAGCTCATT----GAAATTGC 539
||||||||||.||.|||||.||||||||.||| || |||||.||
RBAM_021400__ 494 ATGAAGACGGCACAATGGCCAGAGTGCCGGAG----TTAGCCGAAATCGC 539
BSNT_03462___ 540 GAAAAAGCATCAATTAAAAATGATCACCATTAAGGATTTGATTCAATACC 589
..||...||.||..|.||||||||.||.||.||.||.||.||..|.||||
RBAM_021400__ 540 CGAACGCCACCAGCTGAAAATGATTACGATAAAAGACTTAATAGAGTACC 589
BSNT_03462___ 590 GTTACAATCTGACAACACTTGTCGAGC-GTGAAGTTGACATTACGCTGCC 638
|||||||..|.||.|||||||| ||.| |.||||||||.|||||||||||
RBAM_021400__ 590 GTTACAACATTACGACACTTGT-GAACAGAGAAGTTGATATTACGCTGCC 638
BSNT_03462___ 639 TACTGATTTTGGGACATTTAAGGTTTATGGATACACAAATGAGGTAGATG 688
.|||||.||.||.||.||||..|||||.|||||.|||||.|||||.||.|
RBAM_021400__ 639 GACTGACTTCGGCACGTTTAGAGTTTACGGATATACAAACGAGGTTGACG 688
BSNT_03462___ 689 GAAAAGAGCATGTCGCATTTGTGATGGGAGAGGTGCCGTTCGGAGAA--- 735
|||||||.|||.||||.|||||.|||||.||.||.||||| .||
RBAM_021400__ 689 GAAAAGAACATCTCGCCTTTGTCATGGGGGATGTCCCGTT----TAACAG 734
BSNT_03462___ 736 -GAACCGGTATTGGTCCGGGTGCATTCAGAATGTCTCACAGGTGACGTGT 784
|||||.||..|.|||.|.|||||.||||||||.||.||.||.||.||||
RBAM_021400__ 735 CGAACCCGTTCTTGTCAGAGTGCACTCAGAATGCCTGACGGGCGATGTGT 784
BSNT_03462___ 785 TTGGGTCTCATCGCTGTGACTGCGGACCGCAGCTGCACGCCGCGCTGAAC 834
|||..||||||||||||||.||||||||.|||||.||.||||||||....
RBAM_021400__ 785 TTGCATCTCATCGCTGTGATTGCGGACCTCAGCTTCATGCCGCGCTTGCG 834
BSNT_03462___ 835 CAAATTGCCGCAGAAGGCCGTGGAGTGCTTCTGTACTTGCGCCAAGAAGG 884
||||||||.|.|||||||||.||.||.||..||||.||||||||.|||||
RBAM_021400__ 835 CAAATTGCTGAAGAAGGCCGCGGCGTTCTATTGTATTTGCGCCAGGAAGG 884
BSNT_03462___ 885 ACGAGGCATCGGTTTAATCAATAAATTAAAAGCTTATAAGC----TTCAG 930
..||||.|||||||||||||||||..|.||.||.|| | |.|||
RBAM_021400__ 885 CAGAGGAATCGGTTTAATCAATAAGCTGAAGGCGTA----CCGATTGCAG 930
BSNT_03462___ 931 GAACAAGGTTATGACACCGTAGAAGCCAATGAGGCGCTTGGATTCTTGCC 980
||||||||.||||||||.||.|||||.||.||.|||||.||.||..||||
RBAM_021400__ 931 GAACAAGGGTATGACACGGTTGAAGCGAACGAAGCGCTCGGCTTTCTGCC 980
BSNT_03462___ 981 GGATCTTCGCAACTATGGCATCGGAGCACAAATTTTACGCGACCTCGGTG 1030
.|||||.||||||||.||||||||.||.||.|||.|.||||||.|.||.|
RBAM_021400__ 981 TGATCTGCGCAACTACGGCATCGGCGCCCAGATTCTCCGCGACTTAGGGG 1030
BSNT_03462___ 1031 TCCGGAATATGAAGCTTTTGACGAATAATCCGCGAAAAATCGCAGGCCTT 1080
|.|.|.|||||||.|||||.||.|||||.||.||.||.|||||.|||||.
RBAM_021400__ 1031 TTCAGCATATGAAACTTTTAACCAATAACCCCCGGAAGATCGCCGGCCTC 1080
BSNT_03462___ 1081 GAAGGCTACGGACTCAGTATTTCAGAAAGAGTGCCGCTTCAAATGGAGGC 1130
|||||.|||||.|||||.|||||||||.|.|||||||||||||||||.||
RBAM_021400__ 1081 GAAGGATACGGTCTCAGCATTTCAGAACGGGTGCCGCTTCAAATGGAAGC 1130
BSNT_03462___ 1131 GAAAGAACACAATAAAAAATATTTGCAAACCAAAATGAACAAGCTAGGTC 1180
||..||.||.||.||..|||||||.||.|||||||||||.||.||.||.|
RBAM_021400__ 1131 GAGTGAGCATAACAAGCAATATTTACAGACCAAAATGAAAAAACTTGGAC 1180
BSNT_03462___ 1181 ATTTACTTCATTTCTAA 1197
||.|.||||||||||||
RBAM_021400__ 1181 ATCTGCTTCATTTCTAA 1197
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