Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03457 and RBAM_021370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:41
# Commandline: needle
# -asequence dna-align/BSNT_03457___ypuF.1.9828.seq
# -bsequence dna-align/RBAM_021370___ypuF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03457___ypuF-RBAM_021370___ypuF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03457___ypuF-RBAM_021370___ypuF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03457___ypuF
# 2: RBAM_021370___ypuF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 557
# Identity: 375/557 (67.3%)
# Similarity: 375/557 (67.3%)
# Gaps: 67/557 (12.0%)
# Score: 1191.5
#
#
#=======================================
BSNT_03457___ 1 TTGTATCCGAAAGCTTATATAGATTATCTCGTTGAGTTTCACGCGACACG 50
||||||||.|||||||||||.|..|.|.|.|..||.||||||||..||.|
RBAM_021370__ 1 TTGTATCCTAAAGCTTATATCGGCTTTTTGGCCGAATTTCACGCATCAAG 50
BSNT_03457___ 51 GGATTATTTTGAATGCCATGAAATATTAGAAGAATATTGGAAGGAAGATC 100
.|||||||||||.||.||||||.|.|||||.|||||||||||.|||...|
RBAM_021370__ 51 AGATTATTTTGAGTGTCATGAACTGTTAGAGGAATATTGGAAAGAAAGCC 100
BSNT_03457___ 101 CGCCAAAGAAACGAAAACGC---TATTGGGTCGGCTTTATTCAGCTTGCA 147
||.|..|.||.||.| || .|||||||||||.|.|||||||||||.
RBAM_021370__ 101 CGGCTGAAAAGCGGA---GCATTCATTGGGTCGGCCTGATTCAGCTTGCC 147
BSNT_03457___ 148 GTTGCTTTATATCATCACAGAAGGCAGAATACAGCCGGGGCAAAAAGACT 197
||.|||.|.|||||.||..|.|||...|||..|||||||||.|||.|.||
RBAM_021370__ 148 GTCGCTCTGTATCACCAGCGCAGGGGAAATGAAGCCGGGGCGAAACGGCT 197
BSNT_03457___ 198 GATGGCAAACAGCATCCGAATTCTC--------AAAGCAGAACACCGGGC 239
|||.||.||||||.|.||.|||||| ||||||| .|||.|
RBAM_021370__ 198 GATTGCCAACAGCTTACGTATTCTCCGGTCTGAAAAGCAG----GCGGTC 243
BSNT_03457___ 240 AGTCGAAGACT-TAGGGCTTGATCATGGCC-------GTTTGCTCGAGCT 281
.|| .|| |.||.| ||| ||| | .||.|.||.||
RBAM_021370__ 244 TGT-----TCTCTCGGTC----TCA--GCCACCCGAAG-CTGATTGAACT 281
BSNT_03457___ 282 TATGCAATCGGTTTACGAACAAATCGAAACGGGCTCTGCC-TATAAAAGC 330
.||..||.||.|||..||..|.||.|||.||||| ||||| ||||||||.
RBAM_021370__ 282 GATAGAAACGCTTTCAGACGATATAGAAGCGGGC-CTGCCTTATAAAAGT 330
BSNT_03457___ 331 ATTATGCTGCCAATCAAAGATGAGAAACTGGAGGAAGCATGCAGGAT--- 377
.||||||||||.||.|.||||||....|||.|.|||||||| |
RBAM_021370__ 331 GTTATGCTGCCGATTACAGATGAAGCCCTGAAAGAAGCATG-----TCTT 375
BSNT_03457___ 378 --CGAATGCAG--GAAAAAAAAG---TATACATGGGGGCAGTCCAGTGCA 420
|||||||.| | |||| ||||||||||||||...|.|.|.|
RBAM_021370__ 376 GCCGAATGCCGCCG-----AAAGGGCTATACATGGGGGCAAGACGGCGTA 420
BSNT_03457___ 421 CTCAGGAACATA--TTTCTGATCGACAAACACCGTTTGCGGGATCGGACT 468
|||| ||| |||||.||..|.||||||||..|||||||..||||.
RBAM_021370__ 421 -TCAG----ATACCTTTCTTATTCATAAACACCGCCTGCGGGACAGGACG 465
BSNT_03457___ 469 GACGTCATCCGTGAACGTGAAAAAGAAATAGAACGCAGAAAAAAAAGCAG 518
||.|||||....|||||.|||...|||||.||..|.||||||||||||||
RBAM_021370__ 466 GATGTCATTAAGGAACGCGAACGGGAAATTGAGAGAAGAAAAAAAAGCAG 515
BSNT_03457___ 519 AGGCTGA 525
|||||||
RBAM_021370__ 516 AGGCTGA 522
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