Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03450 and RBAM_021320

See Amino acid alignment / Visit BSNT_03450 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:41
# Commandline: needle
#    -asequence dna-align/BSNT_03450___spmA.1.9828.seq
#    -bsequence dna-align/RBAM_021320___spmA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03450___spmA-RBAM_021320___spmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03450___spmA-RBAM_021320___spmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03450___spmA
# 2: RBAM_021320___spmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 595
# Identity:     469/595 (78.8%)
# Similarity:   469/595 (78.8%)
# Gaps:           8/595 ( 1.3%)
# Score: 1831.0
# 
#
#=======================================

BSNT_03450___      1 ATGGTCAATATAATTTGGGTCAGTTTAACCGTGATCGGACTCGTTTTTGC     50
                     |||||||||.||||.|||||..||.|.||.||.||||||||.||.|||||
RBAM_021320__      1 ATGGTCAATTTAATCTGGGTATGTCTGACGGTAATCGGACTTGTCTTTGC     50

BSNT_03450___     51 GATGTGCAACGGAACTCTGCAAGATGTAAATGAAGCCGTGTTTAAGGGTG    100
                     |||||..|||||.||..||||.|||||.|||||||||||.|||||.||.|
RBAM_021320__     51 GATGTTTAACGGTACCTTGCAGGATGTGAATGAAGCCGTTTTTAAAGGAG    100

BSNT_03450___    101 CGAAAGAAGCGATTACGATTTCATTTGGATTGATGAGCGTGCTTGTTTTC    150
                     |.|||||||||.|||||||.||.||.|||||.||||||||.||.||.|||
RBAM_021320__    101 CAAAAGAAGCGGTTACGATCTCGTTCGGATTAATGAGCGTTCTCGTGTTC    150

BSNT_03450___    151 TGGCTTGGCTTAATGAAAATCGCCGAGCAGTCAGGTCTTTTGGATATTTT    200
                     |||||.|||.|.||||||||.|||||||||||.||.|||||||||||.||
RBAM_021320__    151 TGGCTCGGCCTGATGAAAATAGCCGAGCAGTCCGGCCTTTTGGATATATT    200

BSNT_03450___    201 CAGCCGGATGTGCAGGCCTTTTATATCTAAACTGTTCCCTGATATACCGC    250
                     ||||.|.||||||.|.||.|||||.|||||.|||||.||.|||||.||.|
RBAM_021320__    201 CAGCAGAATGTGCCGCCCGTTTATTTCTAAGCTGTTTCCCGATATTCCCC    250

BSNT_03450___    251 CGGATCACCCGGCGATGGGCTATATTTTATCTAATCTTATGGCGAATTTC    300
                     |.|||||.|||||||||||.||.||.|||||.|||||.|||||.||.||.
RBAM_021320__    251 CTGATCATCCGGCGATGGGATACATCTTATCAAATCTCATGGCAAACTTT    300

BSNT_03450___    301 TTCGGCCTCGGAAATGCAGCAACTCCGCTTGGCATTAAAGCAATGGAACA    350
                     |||||.||.||||||||.||.||.|||||.|||||||||||.|||||.||
RBAM_021320__    301 TTCGGACTGGGAAATGCGGCGACACCGCTCGGCATTAAAGCCATGGAGCA    350

BSNT_03450___    351 AATGAAAAAGCTGAACGGA---AACCGATCGGAAGCAAGCCGGTCAATGA    397
                     .||||||||||||||.|||   ||   .||.||.||.|||||.||.||||
RBAM_021320__    351 GATGAAAAAGCTGAATGGAGGTAA---GTCTGAGGCCAGCCGTTCCATGA    397

BSNT_03450___    398 TTACTTTTTTAGCTGTTAATACGTCCTGCATCACACTCATCCCGACAACG    447
                     ||||.|||||.||.||.|||||.||..|.||.|||.|.||.||||||||.
RBAM_021320__    398 TTACCTTTTTGGCGGTAAATACTTCGAGTATTACATTGATACCGACAACC    447

BSNT_03450___    448 GTGATCGCTGTCCGAATGGCTTATTCCTCCAAAACGCCGACAGATATCGT    497
                     ||.||.||.||.||.||||||||.||..|.|||.|.|||||.||||||||
RBAM_021320__    448 GTCATTGCCGTGCGCATGGCTTACTCGGCGAAATCACCGACCGATATCGT    497

BSNT_03450___    498 CGGGCCAAGCATTTTGGCAACGCTTATTTCCGGAATCGGTGCCATTATCA    547
                     ||||||.|.|||.||.||.||..|.|||||.||||||||.||.|||.|||
RBAM_021320__    498 CGGGCCGACCATCTTAGCGACTTTAATTTCGGGAATCGGCGCGATTTTCA    547

BSNT_03450___    548 TTGATCGGTATTTTTATTACCGCCGCAAAA-AGAAGGGAAGGTGA    591
                     ||||.||.||.||.|..||||||||||||| |.||||| ||||.|
RBAM_021320__    548 TTGACCGCTACTTCTGGTACCGCCGCAAAAGAAAAGGG-AGGTAA    591


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.