Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03444 and RBAM_021280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:40
# Commandline: needle
# -asequence dna-align/BSNT_03444___resB.1.9828.seq
# -bsequence dna-align/RBAM_021280___resB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03444___resB-RBAM_021280___resB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03444___resB-RBAM_021280___resB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03444___resB
# 2: RBAM_021280___resB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1655
# Identity: 1251/1655 (75.6%)
# Similarity: 1251/1655 (75.6%)
# Gaps: 52/1655 ( 3.1%)
# Score: 4602.5
#
#
#=======================================
BSNT_03444___ 1 ATGAAGCAAGTCAAATGTGAATGCGGACATATAAACCCGGTCGGAACCGT 50
|||||..|.|||||||||||||||||.||..|.||.||.|.|||.||.||
RBAM_021280__ 1 ATGAAAAAGGTCAAATGTGAATGCGGGCACGTGAATCCAGCCGGGACGGT 50
BSNT_03444___ 51 TTTATGCGAATCGTGC-GGAAGAGCTCTTCAGGAAACTC---AACCTCCG 96
|||.|||||.|||||| ||||| .|.|||.|.|| || ||.|.|||
RBAM_021280__ 51 TTTGTGCGAGTCGTGCGGGAAG-CCGCTTGATGA---TCAAAAATCGCCG 96
BSNT_03444___ 97 CTCGCTGATATGAGATATGACGGAAGCGCAAGACGTTCGCAAACCTATAA 146
||.||.||||||.|.||.|||||.||||||||.|||||||||||.|||||
RBAM_021280__ 97 CTTGCCGATATGCGGTACGACGGCAGCGCAAGGCGTTCGCAAACATATAA 146
BSNT_03444___ 147 CAAAACGATCATCGATAAAATTTGGAATTTCTTTTCCTCGGTTAAGGTGG 196
||||||.|||.|.|||||..|.|||||.||||||||.||.||.||.||.|
RBAM_021280__ 147 CAAAACAATCGTAGATAAGGTATGGAACTTCTTTTCTTCCGTAAAAGTCG 196
BSNT_03444___ 197 GAATATGGCTTATCGTCATAACCCTTGCCGCATCAGCGTTCGGCACCATT 246
||||||||||.||||||||.||.||.||.||.||.||.|||||.||..||
RBAM_021280__ 197 GAATATGGCTGATCGTCATTACTCTGGCGGCGTCTGCTTTCGGTACGGTT 246
BSNT_03444___ 247 TTTCCCCAGGAAGCCTATCTGCCTCCGGGCGCACAGGCTGATACTTATTA 296
|||||.||||||||.||||||||.||||||||.|||.|.|||||.|||||
RBAM_021280__ 247 TTTCCGCAGGAAGCTTATCTGCCGCCGGGCGCCCAGCCGGATACATATTA 296
BSNT_03444___ 297 CAAGGAGCAGTACGGCACGTTCGGCCAGCTTTATTATTTGCTCGGGTTTC 346
..|..||||||||||||...|||||||.||.||||||.||||.|||||||
RBAM_021280__ 297 TGAACAGCAGTACGGCATAATCGGCCAACTGTATTATCTGCTGGGGTTTC 346
BSNT_03444___ 347 ATCATTTATATGGTTCTTGGTGGTATTTGCTGCTCATTGCCTCGATCGGC 396
||||..|.||.||.||.|||||||||.||||.||.||.||.||.||.|||
RBAM_021280__ 347 ATCACCTGTACGGCTCATGGTGGTATATGCTCCTGATCGCATCCATTGGC 396
BSNT_03444___ 397 ATTTCACTCGTGATTTGCAGCCTTGATCGGGTCATTCCGTTGTACAGAGC 446
||.|||||.||.||.||||||||.||||||||.|||||.||||||||.||
RBAM_021280__ 397 ATATCACTGGTCATCTGCAGCCTGGATCGGGTGATTCCTTTGTACAGGGC 446
BSNT_03444___ 447 GTTAAAAAACCAAGGCGTCAGAAGGAGCCCAG-CTTTTTTAAGAAGGCAG 495
|.|.|||||.|||||.||..|..|||..||.| ||||||.||| ||||||
RBAM_021280__ 447 GCTGAAAAATCAAGGAGTACGGCGGAATCCGGTCTTTTTGAAG-AGGCAG 495
BSNT_03444___ 496 CGCTTGTTCAGTGAAACAGTTACTGTACTGAACGGGGA--------ATCG 537
||..|.|.|||....||||..|..|..||||.|||||| ||.|
RBAM_021280__ 496 CGTCTATACAGCCGGACAGAAATCGAGCTGAGCGGGGATGCGGCTGATAG 545
BSNT_03444___ 538 AA--AGAAAAGATAGTTGCTCTATTAAAGAAAAAACATTATAGAATCAGA 585
.| |||| |.|.|||.||.|||||.|||||||||.|..||
RBAM_021280__ 546 CATCAGAA----------CACGATTGAAAAAAAAGCATTATAGAGTGCGA 585
BSNT_03444___ 586 GAAAAAGAGGGCAGCATTCTTGCTGAAAAAGGACGCTTTTCCCGCTGGGG 635
|||.|||||||.||||||||.||.||||||||.||.|||||..|.|||||
RBAM_021280__ 586 GAACAAGAGGGAAGCATTCTGGCGGAAAAAGGCCGTTTTTCAAGATGGGG 635
BSNT_03444___ 636 CCCGTATGTCAACCATATTGGATTGATCATCTTTTTGATTGGTGCGATGC 685
.||.||.|||||.|||||.||..|||||||.|||.||||.||.||.||||
RBAM_021280__ 636 GCCCTACGTCAATCATATCGGCCTGATCATTTTTCTGATCGGAGCCATGC 685
BSNT_03444___ 686 TGAGATTTGTGCCTGGCATGTACGTCGATGAGACGCTTTGGGTCAGAGAA 735
||||||||||.||.||.|||||.||||||||.|||||.||||||.|.|||
RBAM_021280__ 686 TGAGATTTGTACCCGGTATGTATGTCGATGAAACGCTCTGGGTCCGTGAA 735
BSNT_03444___ 736 GGCGAAACCGCCGCA-ATTCCGGGTACAGACGGAAAATATTATTTGAAAA 784
|||||||||||| || ||.||.||.||.|||||.||.|||||.||.||||
RBAM_021280__ 736 GGCGAAACCGCC-CAGATCCCCGGCACTGACGGCAAGTATTACTTAAAAA 784
BSNT_03444___ 785 ACAATCAATTCAGCG-TAGAGACCTATAACAGCAAAACA--GAAAAAAAG 831
||||.|..|||| || |..||||.||||||| ||.||| ||.|||||.
RBAM_021280__ 785 ACAACCGGTTCA-CGATGCAGACATATAACA--AAGACACTGAGAAAAAA 831
BSNT_03444___ 832 GTATTTGCAGATGCCATTGACAGAGTCGGGGACGGTAGAGTGGCAAAGAA 881
|||||.||.||.|||||||||||||.|||..||||.|.|||.||.|| |.
RBAM_021280__ 832 GTATTCGCCGACGCCATTGACAGAGCCGGAAACGGCAAAGTCGCCAA-AT 880
BSNT_03444___ 882 CTTTCA-AACCGATGCCGTACTCTACAAGAGAGAAGGAAAAATTGTTTAT 930
|.|||| |||.||.||.||..|.||||||||.|||||..|.|||||.|..
RBAM_021280__ 881 CCTTCACAACGGACGCGGTTTTGTACAAGAGGGAAGGCGACATTGTATTC 930
BSNT_03444___ 931 GGCGAGAAGCCGAAGCTGAAAAAAGTAACAGAAGAAGACATCCGTGTCAA 980
||.||.|||||||||||.||||.|||.|.||||.|..|.|||||.|||||
RBAM_021280__ 931 GGTGAAAAGCCGAAGCTTAAAAGAGTCAAAGAAAACAATATCCGCGTCAA 980
BSNT_03444___ 981 TCAGCCGCTGCGTTTTGATTCTTTTTCCGTTTACCAGGTGGATTACAAAG 1030
|.|.||||||||.|||||.||.|.|||.||.||.||||||||.||.||||
RBAM_021280__ 981 TGAACCGCTGCGCTTTGACTCCTATTCTGTGTATCAGGTGGACTATAAAG 1030
BSNT_03444___ 1031 AGAATCAGCTTGACCAAATGGTGTTCCAGCTGATTGATAAAAAAACAAAA 1080
|.||.|||||.||.||.|||||.||.||||||||.||..|||||||||||
RBAM_021280__ 1031 AAAACCAGCTCGATCAGATGGTATTTCAGCTGATCGACCAAAAAACAAAA 1080
BSNT_03444___ 1081 AAATCCTTTGGGAGCCTGAAGATCAACCTTCTGGATCCAGATTCGGTCTA 1130
.|.||.||.||.|..|||||||||||.|||||.|||||.||..|||.|||
RBAM_021280__ 1081 CAGTCATTCGGCAAACTGAAGATCAATCTTCTTGATCCCGACACGGACTA 1130
BSNT_03444___ 1131 TGATCTTGGCAACGGTTACAAGGTGGAAATCGCCAGCTACCTGCCTGACT 1180
|||||||||.|||||||||||.|||.|.||||||||.||.||.|||||.|
RBAM_021280__ 1131 TGATCTTGGTAACGGTTACAAAGTGCAGATCGCCAGTTATCTTCCTGATT 1180
BSNT_03444___ 1181 TCTATTTTAATCAGGACGGAGAGCCGAGCACAAAAACAAAGATCCCTAAC 1230
|.||||||||..||||||||||.||||||||.|||||.|||.|.||||||
RBAM_021280__ 1181 TTTATTTTAACAAGGACGGAGAACCGAGCACGAAAACGAAGGTTCCTAAC 1230
BSNT_03444___ 1231 AATCCGGCTTTTGTCTTTAATATTATAACGCCGGACAAACCGAAAGGCGA 1280
||||||||||||||||||||.||.|...|.||.|||||.||||||||.||
RBAM_021280__ 1231 AATCCGGCTTTTGTCTTTAAAATCACGGCTCCTGACAAGCCGAAAGGGGA 1280
BSNT_03444___ 1281 AAAGAGCTTTGTCGCCATCCAAGAAACCATCGAAGGATCAGACAATAATA 1330
.||.||.|||||.||.||.||..|.||..|.|||||.||.||.|.|||.|
RBAM_021280__ 1281 GAAAAGTTTTGTTGCGATTCAGCAGACTGTTGAAGGTTCCGAAAGTAACA 1330
BSNT_03444___ 1331 AATACAAGCTGAAATTTGACCATGTCGAAACGAAAAACATTACTGGACTT 1380
|.|||||..|.|||||.||||||||.|||||||||||||||||.|||||.
RBAM_021280__ 1331 AGTACAAATTAAAATTCGACCATGTGGAAACGAAAAACATTACAGGACTC 1380
BSNT_03444___ 1381 ACAGTCAGAAAGGATCTGACACTCTGGGTGCTTGCTGTCGGCGGAGCCAT 1430
||.||||||||.||..|.||..|.|||||||||||.||||||||.||.||
RBAM_021280__ 1381 ACCGTCAGAAAAGACTTAACCTTATGGGTGCTTGCCGTCGGCGGCGCGAT 1430
BSNT_03444___ 1431 TTTTATGATCGGTGTTATTCAAGGTATGTACTGGCAGCATCGAAGAATTT 1480
.|||||||||||.||.||||||||.||||||||||||||..||||.||.|
RBAM_021280__ 1431 CTTTATGATCGGCGTCATTCAAGGAATGTACTGGCAGCACAGAAGGATCT 1480
BSNT_03444___ 1481 GGCTGCACTCACAG--GACGGTGCAGTTATGGTAGCGGGGCATACCAATA 1528
||.|..| .|||| ||...||.|||..|.||.|||||.|||||.||.|
RBAM_021280__ 1481 GGATCAA--AACAGGTGATCATGAAGTGCTTGTGGCGGGACATACGAACA 1528
BSNT_03444___ 1529 AAAACTGGTTTGGCCTGAAGAAGGATTTAGCATTT-ATATTGGCTGATTC 1577
||||||||||.||.|||||.||.|||.|.|.|||| .|.||.|| ||..|
RBAM_021280__ 1529 AAAACTGGTTCGGTCTGAAAAAAGATATCGAATTTGTTCTTAGC-GAGAC 1577
BSNT_03444___ 1578 CGGACTGACT---GAACCGGTGGACCAAAAAGAATTAATCAAAACACAGA 1624
||| ||.| ||.||||..||.|||||||||||...|||||..|||.
RBAM_021280__ 1578 CGG---GATTCAAGAGCCGGCCGATCAAAAAGAATTGGCCAAAAATCAGG 1624
BSNT_03444___ 1625 AATAG 1629
..|||
RBAM_021280__ 1625 CCTAG 1629
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