Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03441 and RBAM_021270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:40
# Commandline: needle
# -asequence dna-align/BSNT_03441___resC.1.9828.seq
# -bsequence dna-align/RBAM_021270___resC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03441___resC-RBAM_021270___resC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03441___resC-RBAM_021270___resC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03441___resC
# 2: RBAM_021270___resC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1181
# Identity: 750/1181 (63.5%)
# Similarity: 750/1181 (63.5%)
# Gaps: 229/1181 (19.4%)
# Score: 2889.5
#
#
#=======================================
BSNT_03441___ 1 ATGGCAGAGCTGAGCGGAAATTTTCTTTATGCGGCCTTTCTTGTGTATTT 50
RBAM_021270__ 0 -------------------------------------------------- 0
BSNT_03441___ 51 AATCGCTGTCCCGATCTTCGGCGGGGCCATACGCGGGAATAAAGATAAAA 100
RBAM_021270__ 0 -------------------------------------------------- 0
BSNT_03441___ 101 AGGGCAGGCCAAACCGATGGGCCAACATTGGAATCACTCTTTCTATTGTC 150
RBAM_021270__ 0 -------------------------------------------------- 0
BSNT_03441___ 151 GGTTTTTTCTGCCACCTTGGATATTTCATCACAAGGTGGGCTGCCAGCGG 200
RBAM_021270__ 0 -------------------------------------------------- 0
BSNT_03441___ 201 CCATGCGCCGGTCAGCAATATGTTTGAATTCACCACCGCTTTTGGCATGA 250
|||||||||||.||.||..|.||.|||||||
RBAM_021270__ 1 -------------------ATGTTTGAATTTACGACGTCATTCGGCATGA 31
BSNT_03441___ 251 TGCTTGTTTTGGCGTTTATCATTCTTTATTTTCTCTATAGATTGCCTTCA 300
||||||||.|.||.|||||.|||.||||.|||.|.||.|||.||||||||
RBAM_021270__ 32 TGCTTGTTCTAGCTTTTATTATTATTTACTTTATTTACAGACTGCCTTCA 81
BSNT_03441___ 301 TTAGGCCTGTTTACGCTGTCAATTGCTTTATTGCTGATTGCCTACGCCAG 350
||||||.||||.||..||||.||.||..|.|||||.||.||.||.||.||
RBAM_021270__ 82 TTAGGCATGTTCACATTGTCTATCGCGCTTTTGCTTATCGCATATGCAAG 131
BSNT_03441___ 351 CATGTTTCCGACAGATATCTCGCCTTTAATTCCTTCGCTCCAAAGCAACT 400
|||||||||||||||.||..||||..|.|||||.||.||.||.|||||.|
RBAM_021270__ 132 CATGTTTCCGACAGACATTACGCCGCTTATTCCGTCACTGCAGAGCAATT 181
BSNT_03441___ 401 GGCTGTATATTCATGTAACAACGGCCGCGCTTGGGCAAGCTATACTTGCC 450
|||||||.|||||.||.||.|||||.|||||.|||||.||.||.|||||.
RBAM_021270__ 182 GGCTGTACATTCACGTCACGACGGCGGCGCTCGGGCAGGCGATTCTTGCG 231
BSNT_03441___ 451 ATCAGCTTTGTCGCTGGTGTCATCTTTCTTTTGAAGCATGTAGACCAGAC 500
|||||.|||||.||.||.|||||.||.||.||.|||||.||.|||||..|
RBAM_021270__ 232 ATCAGTTTTGTAGCCGGCGTCATTTTCCTGTTAAAGCACGTCGACCAATC 281
BSNT_03441___ 501 AAAGCCAAGCAAAAAGACCTTCTGGCTTGAAGCGATTATGTTTATCCTGG 550
.|..||..|.|||||.||.||||||||.||||..||.||||||||.||.|
RBAM_021270__ 282 TAGACCGGGTAAAAAAACGTTCTGGCTCGAAGTCATCATGTTTATACTCG 331
BSNT_03441___ 551 TCACAACCGTCGCCTTTATTGCAATCACATCAGCATTTCGTCTTGCAGGC 600
|.||.|||||.||.|||||.||..||||.||.|||||.||..|.||.|.|
RBAM_021270__ 332 TGACGACCGTGGCATTTATCGCCGTCACGTCGGCATTCCGGATGGCGGAC 381
BSNT_03441___ 601 TATGAAGCGGAGTTTAACTGGGTGGACAAAAGTAAAGAA---AAAGGCGT 647
||..||||.||.|||||.||||||||.||| |||||| |||.||||
RBAM_021270__ 382 TACAAAGCTGAATTTAATTGGGTGGATAAA---AAAGAAGCCAAAAGCGT 428
BSNT_03441___ 648 GATGGTGTACGAAATGCCCGCGCTTGTCGGTCCGCATCAGGGAGAGCTTT 697
.|||.|.||.||.|||||.|||||||||||.||||||.|||||||.||..
RBAM_021270__ 429 CATGATATATGATATGCCTGCGCTTGTCGGCCCGCATGAGGGAGAACTGC 478
BSNT_03441___ 698 TGACCGAAGGAAGAATGAAACCGCTTGTTGATCTTCCCGCGCTTTTCTCA 747
|.||.|||||...||||||.||||||.||||.|||||.||..||||.|||
RBAM_021270__ 479 TTACGGAAGGCGCAATGAAGCCGCTTATTGAGCTTCCGGCCATTTTTTCA 528
BSNT_03441___ 748 GGCAGAAAAGTGAACACTGTCATTTGGTCATTTGGAGCAGGTCTTGTGTT 797
||||||||.||.||.||.||.||.|||||.|||||.|||||.||.||.||
RBAM_021270__ 529 GGCAGAAAGGTCAATACGGTGATCTGGTCGTTTGGCGCAGGCCTCGTTTT 578
BSNT_03441___ 798 GTATGGGGCTCTCCGTCTGATCATCAGAAAAAGAATCAGCGCTCTATTA- 846
.||.||.||.|||.|.|||||..|||||||.||||||||||||| |||
RBAM_021270__ 579 ATACGGTGCGCTCAGGCTGATATTCAGAAAGAGAATCAGCGCTC--TTAT 626
BSNT_03441___ 847 CA-TCCGCTGGTGAAAAACGTCAATCTTGATCTGGTGGATGAGGTTGGGT 895
|| .|||||.||.|||||.||.|||||.||..||||.|||||.||.||.|
RBAM_021270__ 627 CAGCCCGCTCGTCAAAAATGTGAATCTGGACTTGGTCGATGAAGTCGGCT 676
BSNT_03441___ 896 ACAGGGCCGTATCAATCGGATTTCCGATCTTTACACTCGGCGCGCTGATC 945
||.|.||.||.||.|||||.||||||.|.||.||||||||||||||..|.
RBAM_021270__ 677 ACCGCGCTGTTTCCATCGGTTTTCCGGTATTCACACTCGGCGCGCTTGTG 726
BSNT_03441___ 946 TTTGCAATGATTTGGGCTCAGCTTGCGTGGACCAGGTTTTGGGGCTGGGA 995
|||||.|||||||||||.||||||||.|||||..|.||||||||||||||
RBAM_021270__ 727 TTTGCGATGATTTGGGCGCAGCTTGCATGGACGCGTTTTTGGGGCTGGGA 776
BSNT_03441___ 996 CCCTAAGGAAGTATGGGCGCTGATCACATTTTTGTTCTATGCCGCTTACT 1045
|||.||||||||||||||||||||.||.|||||.||.||.||.||.||.|
RBAM_021270__ 777 CCCGAAGGAAGTATGGGCGCTGATTACCTTTTTATTTTACGCAGCGTATT 826
BSNT_03441___ 1046 TGCATTTAAGACTGTCAAGAGGCTGGCACGGTGAGAAGTCAGCATGGCTG 1095
||||.||..|.|||||||||||||||||.||.||.|||||.||.|||||.
RBAM_021270__ 827 TGCACTTGCGGCTGTCAAGAGGCTGGCATGGCGAAAAGTCCGCGTGGCTT 876
BSNT_03441___ 1096 GCCGTAATCGGTTTTGCTATTATTATGTTTAATTTAATATTCGTAAATCT 1145
|||||.|||||.||.||.||||||||||||||.|||||.||.||.|||||
RBAM_021270__ 877 GCCGTCATCGGCTTCGCCATTATTATGTTTAACTTAATTTTTGTGAATCT 926
BSNT_03441___ 1146 TGTGCTTGCCGGACTTCATTCTTATGCATAG 1176
.||||||||||||||||||||.||.||||||
RBAM_021270__ 927 CGTGCTTGCCGGACTTCATTCGTACGCATAG 957
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