Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03437 and RBAM_021240

See Amino acid alignment / Visit BSNT_03437 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:40
# Commandline: needle
#    -asequence dna-align/BSNT_03437___sigX.1.9828.seq
#    -bsequence dna-align/RBAM_021240___sigX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03437___sigX-RBAM_021240___sigX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03437___sigX-RBAM_021240___sigX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03437___sigX
# 2: RBAM_021240___sigX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 591
# Identity:     511/591 (86.5%)
# Similarity:   511/591 (86.5%)
# Gaps:          12/591 ( 2.0%)
# Score: 2239.0
# 
#
#=======================================

BSNT_03437___      1 ATGGAAGAAACCTTTCAATTATTATATGATACATATCATCAAGATTTGTA     50
                     |||||||||||||||||..|||||||||||.||||.|||||||||||.||
RBAM_021240__      1 ATGGAAGAAACCTTTCAGATATTATATGATGCATACCATCAAGATTTATA     50

BSNT_03437___     51 CCAATTTTTATTTTATATGGTAAAGGATAAAAACCAGACAGAAGACCTTC    100
                     .|||||||||||||||||||||||.|||||....|||.|.|||||     
RBAM_021240__     51 TCAATTTTTATTTTATATGGTAAAAGATAAGTCGCAGGCTGAAGA-----     95

BSNT_03437___    101 TT-----CAAGAGGTTTATATCCGGGTATTAAATTCTTATCATACGTTTG    145
                     ||     ||.||.||.||||||||.||.||.|||||.||||||||.||||
RBAM_021240__     96 TTTGACGCAGGAAGTGTATATCCGCGTCTTGAATTCCTATCATACATTTG    145

BSNT_03437___    146 AAGGAAGAAGCAGTGAAAAAACATGGCTATTGTCTATCGCACGCCATGTT    195
                     ||||||||||||||||||||||||||||.||.||.||||||||||||||.
RBAM_021240__    146 AAGGAAGAAGCAGTGAAAAAACATGGCTGTTATCCATCGCACGCCATGTG    195

BSNT_03437___    196 GCGATAGACTGGTTCCGTAAACAGCAAACAATCAGACAGCGTATACTCGG    245
                     |||||.|||||||||||.||.|||||.||.||||||||||||||..|.||
RBAM_021240__    196 GCGATTGACTGGTTCCGCAAGCAGCAGACGATCAGACAGCGTATTATGGG    245

BSNT_03437___    246 TACATTTGACTGGGATACACAGGATGTCAGGGATCAGCAATTGCTACCGG    295
                     |||.|||||.|||||||||||.||||||||.||||||||.|||||.||||
RBAM_021240__    246 TACGTTTGATTGGGATACACAAGATGTCAGAGATCAGCATTTGCTTCCGG    295

BSNT_03437___    296 ACGAACTTGCCGTTCAACATGAAAATGTCCGGGAAATTTATGCTGCGCTT    345
                     |||||||.|||||.||.||||||||.|||||||||||||||.|.||||||
RBAM_021240__    296 ACGAACTCGCCGTACAGCATGAAAACGTCCGGGAAATTTATACCGCGCTT    345

BSNT_03437___    346 GATCAATGTACAATCGATCAAAGAGCTGTGATTATCTTGCGGTTTATTCA    395
                     |||||.||.||.||.||||||||||||||.|||||||||.|.||||||||
RBAM_021240__    346 GATCATTGCACCATTGATCAAAGAGCTGTTATTATCTTGAGATTTATTCA    395

BSNT_03437___    396 GGGATATTCAATACAGGAAACAGCCAAGGCTCTGCGCTTCTCGGAAAGCA    445
                     |||||||||.||.||.|||||||||...|||||.||||||||||||||||
RBAM_021240__    396 GGGATATTCCATTCAAGAAACAGCCGCCGCTCTCCGCTTCTCGGAAAGCA    445

BSNT_03437___    446 AAGTAAAAACGACCCAACACAGAGGGCTCAAAGTACTTCGGAAACATATG    495
                     ||||.|||||||||||||||||||||||||||.|||||||||||||.|||
RBAM_021240__    446 AAGTCAAAACGACCCAACACAGAGGGCTCAAAATACTTCGGAAACAGATG    495

BSNT_03437___    496 GAGCTTTTGAGGGAGGAGCTAATGGATGATGAAGTCAGAATGGAACGAAG    545
                     |||||||||||||||||||||||||||||||||||||.|.||||||||||
RBAM_021240__    496 GAGCTTTTGAGGGAGGAGCTAATGGATGATGAAGTCATATTGGAACGAAG    545

BSNT_03437___    546 AACAGA-TAAAGGAGTTGTTAAGTCAACTTCCGGCAGTTAA    585
                     || ||| ||.|||||||||||||.|||||||||||.||||.
RBAM_021240__    546 AA-AGAGTAGAGGAGTTGTTAAGACAACTTCCGGCGGTTAG    585


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