Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03414 and RBAM_021090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence dna-align/BSNT_03414___ypdC.1.9828.seq
# -bsequence dna-align/RBAM_021090___ypdC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03414___ypdC-RBAM_021090___ypdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03414___ypdC-RBAM_021090___ypdC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03414___ypdC
# 2: RBAM_021090___ypdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 659
# Identity: 532/659 (80.7%)
# Similarity: 532/659 (80.7%)
# Gaps: 4/659 ( 0.6%)
# Score: 2138.0
#
#
#=======================================
BSNT_03414___ 1 ATGTTTGCAATCATCTCTGCAGGAATTGCCCCCGGCATCGCGTTATTAAG 50
|||||||||||||||||||||||||||||.||||||||.|||.|.|||||
RBAM_021090__ 1 ATGTTTGCAATCATCTCTGCAGGAATTGCTCCCGGCATTGCGCTGTTAAG 50
BSNT_03414___ 51 TTATTTTTATTTAAAAGATCAGTATGATAATGAACCTGTACATATGGTGC 100
.||||||||||||||||||||||||||.||||||||.|||||||||||||
RBAM_021090__ 51 CTATTTTTATTTAAAAGATCAGTATGACAATGAACCCGTACATATGGTGC 100
BSNT_03414___ 101 TTCGGTCGTTTTTTCTCGGGGTTGTTCTTGTATTTCCCATCATGTTTATC 150
|..||||.|||||||||||||||||.|||||.|||||.|.||||||||||
RBAM_021090__ 101 TGAGGTCTTTTTTTCTCGGGGTTGTCCTTGTGTTTCCGACCATGTTTATC 150
BSNT_03414___ 151 CAGTATGTACTTGAAAAAGAGAATGTAGGAGGCGGAAGTTTTTTCGTTTC 200
||.|||||.||||||||||||.||||.||.||.|||||.|||||||||||
RBAM_021090__ 151 CAATATGTTCTTGAAAAAGAGCATGTGGGGGGAGGAAGCTTTTTCGTTTC 200
BSNT_03414___ 201 TTTTTTATCCTCGGGGTTTTTGGAGGAATCATTAAAATGGTTTATACTGA 250
.|||||.||.|||||.|||.||||.|||||..|.||||||||..|.||||
RBAM_021090__ 201 GTTTTTGTCTTCGGGATTTCTGGAAGAATCGGTGAAATGGTTCGTTCTGA 250
BSNT_03414___ 251 TGATCAGTGTTTACCCGCACGCCCACTTTGATGAGCATTATGACGGGATT 300
||||||||||.||.|||||.||.||.||||||||||||||||||||.||.
RBAM_021090__ 251 TGATCAGTGTGTATCCGCATGCTCATTTTGATGAGCATTATGACGGAATC 300
BSNT_03414___ 301 GTGTACGGTACAAGTGTATCACTCGGTTTTGCAACCCTCGAAAATATTCT 350
||.|||||..|.|||||.||..|.||.|||||.||.||.|||||||||||
RBAM_021090__ 301 GTTTACGGGGCCAGTGTGTCTTTAGGATTTGCCACGCTTGAAAATATTCT 350
BSNT_03414___ 351 TTATTTAATTGGCCACGGCGTAGAGCATGCGTTTGTCAGGGCGCTGCTGC 400
.||||||.|.|||||||||||.||||||||.||..||||||||||.||||
RBAM_021090__ 351 GTATTTATTCGGCCACGGCGTTGAGCATGCTTTCATCAGGGCGCTTCTGC 400
BSNT_03414___ 401 CTGTTTCATGCCATGCCTTGATTGGCGTTATAATGGGATTTTACCTTGGA 450
|.||.||.||||||||..||||.||.||.||.|||||||||||.||.|||
RBAM_021090__ 401 CGGTCTCCTGCCATGCGCTGATCGGAGTAATTATGGGATTTTATCTCGGA 450
BSNT_03414___ 451 AAAGCCCGTTTTTCCGCTG-ATAAGGCGCGTGTAAAGTGGCTTACTCTTT 499
||||||||.|||| |||.| |.||.||.|||||.||.|||.||....|||
RBAM_021090__ 451 AAAGCCCGCTTTT-CGCAGAAAAAAGCCCGTGTCAAATGGTTTGTGATTT 499
BSNT_03414___ 500 CTTTAGTTGTCCCATCCCTTTTGCATGGATCATATGATTTTATCCTAACA 549
|..|.|..||.||.||...|.||||.||.||.||.||||||||.||.||.
RBAM_021090__ 500 CGCTGGCCGTGCCTTCATGTCTGCACGGTTCTTACGATTTTATTCTTACC 549
BSNT_03414___ 550 GCGCTTAGCAATTGGATTTATTATATGCTTCCATTTATGGTATTTTTATG 599
||.||.|...|||||.|.|||||||||||.||.||||||.|.||||||||
RBAM_021090__ 550 GCCCTCAATCATTGGGTATATTATATGCTGCCGTTTATGCTGTTTTTATG 599
BSNT_03414___ 600 GTGGTTTGGTTTGCGTAAAGCGAAAAAAGCCCGTTCCGTTAATATGATGC 649
||||||.||..||||.||.||.||||||||.||.|||||.||||||||.|
RBAM_021090__ 600 GTGGTTCGGGCTGCGAAAGGCAAAAAAAGCACGCTCCGTCAATATGATCC 649
BSNT_03414___ 650 AAGTATAG- 657
||||.| |
RBAM_021090__ 650 AAGTGT-GA 657
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