Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03411 and RBAM_021070
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:37
# Commandline: needle
# -asequence dna-align/BSNT_03411___ypeB.1.9828.seq
# -bsequence dna-align/RBAM_021070___ypeB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03411___ypeB-RBAM_021070___ypeB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03411___ypeB-RBAM_021070___ypeB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03411___ypeB
# 2: RBAM_021070___ypeB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1375
# Identity: 1021/1375 (74.3%)
# Similarity: 1021/1375 (74.3%)
# Gaps: 47/1375 ( 3.4%)
# Score: 3692.0
#
#
#=======================================
BSNT_03411___ 1 ATGATCAGAGGAATTTTAATCGCCGTGCTTGGTATTGCAATAGTCGGTAC 50
|||||.||||||||..|.|||||.||.||.|||.|.||.||.|.||..||
RBAM_021070__ 1 ATGATTAGAGGAATCATTATCGCTGTTCTCGGTGTCGCGATCGCCGCAAC 50
BSNT_03411___ 51 AGGCTACTGGGGATACAAAGAACACCAGGAAAAAGACGCAGTTCTTCTTC 100
.||.|||||||||||.|||||.||.|||||||||||.||.||.|||||.|
RBAM_021070__ 51 CGGATACTGGGGATATAAAGAGCATCAGGAAAAAGATGCGGTCCTTCTGC 100
BSNT_03411___ 101 ATGCTGAAAATAACTATCAGCGGGCGTTTCATGAGCTTACCTATCAGGTG 150
||||.||||||||.||||||.||||.||||||||..|.||.||.||.||.
RBAM_021070__ 101 ATGCGGAAAATAATTATCAGAGGGCTTTTCATGAATTGACGTACCATGTA 150
BSNT_03411___ 151 GATCAGCTTCATGATAAAATCGGAACAACACTTGCCATGAACAGCCAAAA 200
|||||||||||.||.||||||||.||.||.|||||.||||||||..||||
RBAM_021070__ 151 GATCAGCTTCACGACAAAATCGGGACGACGCTTGCGATGAACAGTAAAAA 200
BSNT_03411___ 201 ATCACTGTCGCCTGCATTGATCGATGTGTGGAGGATTACATCAGAAGCTC 250
|||.|||||.||.||..|.||.|||||.|||||.||.|||||.|||||||
RBAM_021070__ 201 ATCTCTGTCTCCGGCGCTCATTGATGTATGGAGAATAACATCTGAAGCTC 250
BSNT_03411___ 251 ATAACAGCGTCAGTCAGCTGCCGCTTACATTAATGCCGTTTAATAAAACT 300
||||||..||.||.||||||||.||.||..|.|||||.||||||||.||.
RBAM_021070__ 251 ATAACAATGTGAGCCAGCTGCCCCTGACTCTCATGCCTTTTAATAAGACG 300
BSNT_03411___ 301 GAAGAGCTATTATCAAAGATCGGCGATTTCAGCTATAAAACGTCAGTCAG 350
||.|||.|.|||||.||.||.||.|||||||||||||||||.||.|||.|
RBAM_021070__ 301 GAGGAGTTTTTATCCAACATAGGAGATTTCAGCTATAAAACATCCGTCCG 350
BSNT_03411___ 351 AGATTTGGACCAAAAGCCGCTTGATAAAAACGAGTATACATCACTAAATA 400
.|||||.||||||||.|||||||||||.||.||.||||||.||||.||.|
RBAM_021070__ 351 GGATTTAGACCAAAAACCGCTTGATAAGAAAGAATATACAACACTGAACA 400
BSNT_03411___ 401 AGCTATATCAGCAGTCCGAAGATATACAAAATGAATTGCGTCA-TGTTCA 449
..||.||..|.|||.|.||..|.||.|||||..|..|.|| || .|||||
RBAM_021070__ 401 GCCTGTACAAACAGGCGGAGAACATTCAAAACCAGCTCCG-CAGCGTTCA 449
BSNT_03411___ 450 GCACCTTGTCATGAGCAAAAACCTTCGCTGGATGGACGTAGAAATGGCCC 499
|||.||.||||||||||||||..|.||.||||||||.||.||.|||||.|
RBAM_021070__ 450 GCATCTCGTCATGAGCAAAAATTTACGGTGGATGGATGTTGAGATGGCGC 499
BSNT_03411___ 500 TGGCTTCTGACGAAAAACAAAGTGATAATACGATTATCAACAGCTTTAAA 549
|.||.||||||.||||||||||.|||||||||||..||.|||||||||||
RBAM_021070__ 500 TCGCCTCTGACAAAAAACAAAGCGATAATACGATCGTCGACAGCTTTAAA 549
BSNT_03411___ 550 ACAGTCGAAAAAAATGTTGGTGCATTCTCCACTG------GCACTGATCT 593
|||||||||||||||||.||.||.||.| ||| ||| |
RBAM_021070__ 550 ACAGTCGAAAAAAATGTAGGCGCTTTTT---CTGAAGACAGCA------T 590
BSNT_03411___ 594 TGGCCCGAGTTTCACCAGTACGAAAAAAGAA-GAGAAAGGCTTCAGCCAT 642
..||||.|..||.||..|..|.||.|.|||| || |||||.||.|..|||
RBAM_021070__ 591 CAGCCCCACATTTACGGGAGCAAATACAGAACGA-AAAGGTTTTACGCAT 639
BSNT_03411___ 643 CTGAAGGGAAAACAAATTTCCGAACAGGAAG----CAAAACAAATTGCTG 688
|||||.||||||||||||.|.|||.|.|||| || ||||.||..
RBAM_021070__ 640 CTGAAAGGAAAACAAATTACGGAAAAAGAAGCGGTCA----AAATCGCAC 685
BSNT_03411___ 689 AGCGCTTTGCCCCAGATGACAATTATTCAATTAAAGTGGTAAAGAGCGGA 738
|.||.|||||.||.|||.|.||||||||||||||||||||.||.|||||.
RBAM_021070__ 686 AACGGTTTGCGCCTGATCATAATTATTCAATTAAAGTGGTCAAAAGCGGC 735
BSNT_03411___ 739 AAAAAAACAAATCGCGATGTATATAGCATCAGCATGAAAGACCCAGACCA 788
|..|||||.|||||.||.|||||.||||||.|||||||||||.|.|||.|
RBAM_021070__ 736 AGGAAAACGAATCGGGACGTATACAGCATCCGCATGAAAGACGCGGACAA 785
BSNT_03411___ 789 TAAAGCAGTGATTTATATGGATATTACGAAGAAGGGCGGGCATCCGGTAT 838
.||..|..|.||.||||||||||||||..|.||.|||||.||||||||.|
RBAM_021070__ 786 CAAGTCTTTTATCTATATGGATATTACCCAAAAAGGCGGACATCCGGTCT 835
BSNT_03411___ 839 ACTTGATCCAAAACAGGGAAGTGAAAGATCAGAAAATCAGTTTAAATGAC 888
|.|||||.|||||..|||..|||||..|.||.||.|||||..|.|||||.
RBAM_021070__ 836 ATTTGATTCAAAAACGGGCCGTGAAGAAACAAAAGATCAGCCTCAATGAA 885
BSNT_03411___ 889 GGATCGAACCGAGCGCTTGCATTTTTAAAGAAAAACGGATTTGAAACAGA 938
|.|||.|||||.||..|.||.||||||||||||||.||||.|||||||.|
RBAM_021070__ 886 GCATCTAACCGGGCCGTCGCGTTTTTAAAGAAAAATGGATATGAAACAAA 935
BSNT_03411___ 939 TGATTTGC----AAATTGATGAAAGTGCCCAATATGATAAAATCGGTGTA 984
.| || |||||||||||||.||.||||||.||||.|||||.||.
RBAM_021070__ 936 AG----GCCTCGAAATTGATGAAAGCGCGCAATATAATAACATCGGCGTC 981
BSNT_03411___ 985 TTTTCATATGTTCCTGTTGAAAATAAAGTCCGGATGTACCCGGAGGCAAT 1034
|||||.|.|.|.||.||.||.||.||.|||||.||.||.|||||.||.||
RBAM_021070__ 982 TTTTCTTTTATCCCCGTGGAGAAAAATGTCCGCATTTATCCGGAAGCCAT 1031
BSNT_03411___ 1035 TCGTATGAAAGTGGCCTTGGATGACGGTGAGGTTGTCGGCTTTTCAGCAA 1084
.||.|||||||||||..|||||||.|||||.||.|||||.|||||.||..
RBAM_021070__ 1032 CCGAATGAAAGTGGCGCTGGATGATGGTGAAGTCGTCGGTTTTTCCGCGC 1081
BSNT_03411___ 1085 GAGACTTCCTCACATCTCACAGAAAAAGAACCATACCTAAGCCTGCAATT 1134
|.||.|.|||..|..|.|||.|.|..|||||.||.||....||.|| ||
RBAM_021070__ 1082 GTGATTACCTGGCCGCGCACCGCACGAGAACGATTCCGGCTCCCGC--TT 1129
BSNT_03411___ 1135 -----ACTGAAGCAGAGGCAAAGTCTAAATTAAATAAAAATGTACAAGTG 1179
.||||.|.||.| |||| |.||..|.|||||||||||..|||||
RBAM_021070__ 1130 TGTCAGCTGATGAAGCG--AAAG-CGAAGCTGAATAAAAATGTTGAAGTG 1176
BSNT_03411___ 1180 AGAGAAACAAGGCTCGCTTTGATTACAAATGAACTAGGTCAAGAAGTGTT 1229
.|.||.||..|||..||..||||.||.|||||.||.|||||.||||||.|
RBAM_021070__ 1177 CGGGAGACCCGGCAGGCGCTGATCACGAATGAGCTCGGTCAGGAAGTGCT 1226
BSNT_03411___ 1230 ATGTTACGAAATGCTTGGAACAATTGAAAATGACACAT-TCAGAATGTAT 1278
.||.|||||||||||.||.||.||.|..||.|||||.| ||| |||||..
RBAM_021070__ 1227 TTGCTACGAAATGCTCGGGACGATCGGGAAAGACACGTATCA-AATGTTC 1275
BSNT_03411___ 1279 ATCAATGCCAAAGACGGATCGGAAGAAAAGGTTGAAAAACTAAAAAATGC 1328
||.|||||..|.||||||...||.|||||..|.|||||..||||||.|||
RBAM_021070__ 1276 ATTAATGCGGACGACGGAAAAGAGGAAAAAATAGAAAAGTTAAAAAGTGC 1325
BSNT_03411___ 1329 AGAACCTATATATAAAGACCTATAA 1353
|||||||||||||||||||||||||
RBAM_021070__ 1326 AGAACCTATATATAAAGACCTATAA 1350
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