Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03405 and RBAM_021040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:37
# Commandline: needle
# -asequence dna-align/BSNT_03405___cmk.1.9828.seq
# -bsequence dna-align/RBAM_021040___cmk.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03405___cmk-RBAM_021040___cmk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03405___cmk-RBAM_021040___cmk.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03405___cmk
# 2: RBAM_021040___cmk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 686
# Identity: 520/686 (75.8%)
# Similarity: 520/686 (75.8%)
# Gaps: 22/686 ( 3.2%)
# Score: 1965.5
#
#
#=======================================
BSNT_03405___ 1 ATGGAAAAGAAATTATCGATTGCAATTGACGGCCCGGCAGCTGCGGGGAA 50
|||||.|||||||||||.|||||.||.|||||.|||||.|||||.||.||
RBAM_021040__ 1 ATGGACAAGAAATTATCAATTGCGATCGACGGGCCGGCCGCTGCCGGAAA 50
BSNT_03405___ 51 AAGCACCGTTGCCAAAATTGTGGCTGAGAAAAAATCGTACATATATATTG 100
||||||||||||.|||||.|||||||||||||||||.||..|.||.||||
RBAM_021040__ 51 AAGCACCGTTGCTAAAATAGTGGCTGAGAAAAAATCATATGTGTACATTG 100
BSNT_03405___ 101 ATACAGGAGCAATGTATCGGGCGATTACGTACGCGGCTTTACAGGAAAAC 150
||||||||||.||||||||.||.|||||.||..||||..|..||.|.||.
RBAM_021040__ 101 ATACAGGAGCGATGTATCGTGCCATTACATATACGGCGCTCAAGCAGAAT 150
BSNT_03405___ 151 GTTGATCTGACAGATGAAGAAAAACTG-GCT----GAGCTGCTAAAGCGG 195
|..|||.|.||.||||||| |.| ||| ||||||||.|||||.
RBAM_021040__ 151 GCCGATTTAACTGATGAAG-----CCGCGCTTACAGAGCTGCTGAAGCGT 195
BSNT_03405___ 196 ACAGACATTGAGCT------AATTACAACAAAAGATGGACAAAAAGTGCT 239
||.||.|||||||| ..||.| .||.|||||||..||.||
RBAM_021040__ 196 ACGGAAATTGAGCTTGTATCCGTTCC------GGAAGGACAAATCGTTCT 239
BSNT_03405___ 240 TGTAAACGGCACAGATGTAACTGAGGCGATCAGAACAGATGAAGTCAGCA 289
.||||||||...||||||.||.||.|..|||.|.|.|||.||||||||||
RBAM_021040__ 240 GGTAAACGGAGAAGATGTGACAGAAGAAATCCGTAAAGACGAAGTCAGCA 289
BSNT_03405___ 290 ACCAAGTTTCAATTGCGGCCAAGCACAGAAGTGTCAGAGAAGAAATGGTG 339
|||||||.|||||.||.||||||||.|.|.|||||||||||||||||||.
RBAM_021040__ 290 ACCAAGTATCAATCGCCGCCAAGCATAAAGGTGTCAGAGAAGAAATGGTC 339
BSNT_03405___ 340 AAACGCCAGCAGCAGCTTGGGGAAAAAGGCGGCGTCGTCATGGATGGTCG 389
|||.|.|||||||||||.||..||||||||||.|||||||||||.||.||
RBAM_021040__ 340 AAAAGACAGCAGCAGCTCGGACAAAAAGGCGGTGTCGTCATGGACGGCCG 389
BSNT_03405___ 390 TGACATCGGGACGCATGTGCTGCCAAATGCAGAAGTAAAAATCTTTCTTT 439
|||.|||||.||.||.||||||||..||||.|||||.|||||.|||||..
RBAM_021040__ 390 TGATATCGGTACTCACGTGCTGCCTGATGCCGAAGTGAAAATTTTTCTGC 439
BSNT_03405___ 440 TGGCATCTGTTGAAGAGAGAGCGAAACGCCGTTATGAAGAAAATGTGAAA 489
|.||.||.||.||.||.||||||||.|||||.||||||||.|||..||||
RBAM_021040__ 440 TCGCGTCCGTAGAGGAAAGAGCGAAGCGCCGATATGAAGAGAATAAGAAA 489
BSNT_03405___ 490 AAAGGCTTTGATGTCAACTACGAAACATTAATTGAGGAAATTGCAAGAAG 539
|||||||.|||.||.||.|||||.||..|.|||||.||||||||.|||.|
RBAM_021040__ 490 AAAGGCTATGACGTGAATTACGAGACGCTCATTGAAGAAATTGCCAGACG 539
BSNT_03405___ 540 AGACAAGCTTGATTCAGAGCGCGAAGTATCTCCGCTGCGTAAAGCAGAAG 589
.|||||.||.|||||||||.|.|||||.||.||||||||.|||||.||||
RBAM_021040__ 540 CGACAAACTCGATTCAGAGAGGGAAGTTTCCCCGCTGCGCAAAGCGGAAG 589
BSNT_03405___ 590 ACGCTCTTGAAATCGACACGACATCGCTTTCCATTCAAGAGGTAGCTGAT 639
||||..||||||||||.|||||.||.||...||||...||.||.||.|..
RBAM_021040__ 590 ACGCGATTGAAATCGATACGACGTCACTCAGCATTGCCGAAGTCGCGGGA 639
BSNT_03405___ 640 AAAATCCTCGAGGCTGTGGAGCAAAAGTCCCGCTGA 675
|||||.||.|||...||.||.||.||.||.||.|.|
RBAM_021040__ 640 AAAATTCTGGAGATCGTCGAACAGAAATCACGTTAA 675
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