Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03390 and RBAM_020960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:36
# Commandline: needle
# -asequence dna-align/BSNT_03390___spoIVA.1.9828.seq
# -bsequence dna-align/RBAM_020960___spoIVA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03390___spoIVA-RBAM_020960___spoIVA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03390___spoIVA-RBAM_020960___spoIVA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03390___spoIVA
# 2: RBAM_020960___spoIVA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1518
# Identity: 1219/1518 (80.3%)
# Similarity: 1219/1518 (80.3%)
# Gaps: 45/1518 ( 3.0%)
# Score: 5025.5
#
#
#=======================================
BSNT_03390___ 1 ---------------------------------TTGGAAAAGGTCGATAT 17
|||||||||||||||||
RBAM_020960__ 1 ATGATAAGGATAGGAAGTCCGGGAGGGGATCACTTGGAAAAGGTCGATAT 50
BSNT_03390___ 18 TTTCAAGGATATCGCTGAACGAACAGGAGGCGATATATACTTAGGAGTCG 67
|||||||||||||||||||||||||||.||||||||||||||||||||||
RBAM_020960__ 51 TTTCAAGGATATCGCTGAACGAACAGGGGGCGATATATACTTAGGAGTCG 100
BSNT_03390___ 68 TAGGTGCTGTCCGTACAGGAAAATCCACGTTCATTAAAAAATTTATGGAG 117
|.||.||||||||||||||.|||||.||.|||||||||||||||||||||
RBAM_020960__ 101 TTGGCGCTGTCCGTACAGGGAAATCTACATTCATTAAAAAATTTATGGAG 150
BSNT_03390___ 118 CTTGTGGTGCTCCCGAATATCAGTAACGAAGCAGACCGGGCCCGAGCGCA 167
||.||||||||||||||||||||.||.||.||.||.||.||.||.|||||
RBAM_020960__ 151 CTCGTGGTGCTCCCGAATATCAGCAATGAGGCCGATCGAGCGCGGGCGCA 200
BSNT_03390___ 168 GGATGAACTGCCGCAGAGCGCAGCCGGCAAAACCATTATGACTACAGAGC 217
||||||.||.|||||.||||||||.||.|||||.||.|||||.|||||.|
RBAM_020960__ 201 GGATGAGCTTCCGCAAAGCGCAGCAGGAAAAACGATAATGACCACAGAAC 250
BSNT_03390___ 218 CTAAATTTGTTCCGAATCAGGCGATGTCTGTTCATGTGTCAGACGGACTC 267
|.||||||||.||||||||.||.|||||.||||||||..|.||.|||||.
RBAM_020960__ 251 CAAAATTTGTCCCGAATCAAGCCATGTCCGTTCATGTCGCGGAAGGACTT 300
BSNT_03390___ 268 GATGTGAATATAAGATTAGTAGATTGTGTAGGTTACACAGTCCCCGGGGC 317
|||||.||.||..|..|.||.||||||||.||.||.||.||.||||||||
RBAM_020960__ 301 GATGTCAACATCCGTCTTGTGGATTGTGTGGGATATACGGTTCCCGGGGC 350
BSNT_03390___ 318 TAAAGGATATGAAGATGAAAACGGGCCGCGGATGATCAATACGCCTTGGT 367
.||.||||||||.|||||||||||.|||.|.|||||||||||.|||||||
RBAM_020960__ 351 GAAGGGATATGAGGATGAAAACGGCCCGAGAATGATCAATACACCTTGGT 400
BSNT_03390___ 368 ACGAAGAACCGATCCCATTTCATGAGGCTGCTGAAATCGGCACTCGAAAA 417
|||||||||||||.||.|||||||||||.||.||||||||.||..|||||
RBAM_020960__ 401 ACGAAGAACCGATTCCCTTTCATGAGGCAGCGGAAATCGGTACGAGAAAA 450
BSNT_03390___ 418 GTCATTCAAGAACACTCGACCATCGGAGTTGTCATTACGACAGACGGCAC 467
|||||.||.||||||||.||.|||||.||.||||||||||||||||||.|
RBAM_020960__ 451 GTCATCCAGGAACACTCCACAATCGGGGTCGTCATTACGACAGACGGCTC 500
BSNT_03390___ 468 CATTGGAGATATCGCCAGAAGTGACTATATAGAGGCTGAAGAAAGAGTCA 517
.||.||.|||||.||..|..|.||.||..|.||.||.|||||||||||||
RBAM_020960__ 501 AATCGGCGATATTGCGCGGGGCGATTACGTGGAAGCGGAAGAAAGAGTCA 550
BSNT_03390___ 518 TTGAAGAGCTGAAAGAGGTTGGCAAACCTTTTATTATGGTCATCAACTCA 567
|.||.||||||||.||.||.||||||||.||||||||||||||||||||.
RBAM_020960__ 551 TCGACGAGCTGAAGGAAGTCGGCAAACCGTTTATTATGGTCATCAACTCG 600
BSNT_03390___ 568 GTCAGGCCGTATCACCCGGAAACGGAAGCCATGCGC-CAG----GATTTA 612
||.|..|||||.|||||||||||.||| |||| ||| ||.|||
RBAM_020960__ 601 GTAAAACCGTACCACCCGGAAACAGAA-----GCGCTCAGAGCTGAATTA 645
BSNT_03390___ 613 AGCGAAAAATATGATATCCCGGTATTGGCAATGAGTGTAGAGAGCATGCG 662
||||..|||||||||||.||.||..|.||.||||||||.||.||||||||
RBAM_020960__ 646 AGCGCGAAATATGATATTCCCGTCCTCGCCATGAGTGTTGAAAGCATGCG 695
BSNT_03390___ 663 GGAATCAGATGTGCTGAATGTGCTCAGAGAGGCCCTCTACGAGTTTCCGG 712
||||.||||||||.|.|..||.||||||||.||.||.||||||||.||.|
RBAM_020960__ 696 GGAAACAGATGTGTTAAGCGTCCTCAGAGAAGCGCTTTACGAGTTCCCTG 745
BSNT_03390___ 713 TGCTAGAAGTGAATGTCAATCTCCCAAGCTGGGTAATGGTGCTGAAAGAA 762
||||.|||||.||||||||.||.||.||||||||.|||||||||||||||
RBAM_020960__ 746 TGCTGGAAGTCAATGTCAACCTTCCGAGCTGGGTCATGGTGCTGAAAGAA 795
BSNT_03390___ 763 AACCATTGGCTGCGTGAAAGCTATCAGGAGTCCGTAAAGGAAACGGTTAA 812
||.||.|||||..|.||.|||||.|||||.||.||.||.|||||.||.||
RBAM_020960__ 796 AATCACTGGCTCAGAGAGAGCTACCAGGAATCAGTGAAAGAAACCGTAAA 845
BSNT_03390___ 813 GGATATTAAACGGCTCCGGGACGTAGACAGGGTTGTCGGCCAATTCAGCG 862
.|||||||||||.||.||.||.||.|||.|||||||||||||.|||||.|
RBAM_020960__ 846 AGATATTAAACGCCTGCGCGATGTCGACCGGGTTGTCGGCCACTTCAGTG 895
BSNT_03390___ 863 AGTTTGAATTCATTGAAAGTGCCGGATTAGCCGGAATTGAGCTGGGCCAA 912
|.|||||.||.||||||||.|||||..|.||||||||.||.||.|||||.
RBAM_020960__ 896 AATTTGAGTTTATTGAAAGCGCCGGTCTGGCCGGAATCGAACTTGGCCAG 945
BSNT_03390___ 913 GGAGTGGCAGAAATTGATTTGTACGCGCCGGATCATCTATATGATCAAAT 962
||.||.|||||||||||||||||.||||||||||||.|||||||.||.||
RBAM_020960__ 946 GGTGTCGCAGAAATTGATTTGTATGCGCCGGATCATTTATATGACCAGAT 995
BSNT_03390___ 963 CTTAAAAGAAGTTGTGGGCGTCGAAATCAGAGGAAGAGACCATCTGCTTG 1012
.||||||||||||||.||.||.||||||.|.||.|.||||||.|||||||
RBAM_020960__ 996 TTTAAAAGAAGTTGTCGGTGTTGAAATCCGCGGGAAAGACCACCTGCTTG 1045
BSNT_03390___ 1013 AGCTCATGCAAGACTTCGCCCATGCGAAAACAGAATATGATCAAGTGTCT 1062
|..|.|||||.|||||||||||.|||||||.||||||||||||.||.||.
RBAM_020960__ 1046 AATTAATGCAGGACTTCGCCCACGCGAAAAAAGAATATGATCAGGTATCA 1095
BSNT_03390___ 1063 GATGCCTTAAAAATGGTCAAACAGACGGGATACGGTATTGCAGCGCCTGC 1112
|||||..|.||||||||.||||||||.||.|||||.|||||.||.||.||
RBAM_020960__ 1096 GATGCGCTGAAAATGGTGAAACAGACCGGCTACGGCATTGCCGCCCCGGC 1145
BSNT_03390___ 1113 TTTAGCTGATATGAGTCTCGATGAGCCGGAAATTATAAGGCAGGGCTCGC 1162
.|||||.||||||||.||.|||||.||||||||.||.||.|||||.||..
RBAM_020960__ 1146 CTTAGCCGATATGAGCCTTGATGAACCGGAAATCATCAGACAGGGATCAA 1195
BSNT_03390___ 1163 GATTCGGTGTGAGGCTGAAAGCTGTCGCTCCGTCGATCCATATGATCAAA 1212
|.|||||.||.|||||.|||||.|||||||||||.||.||||||||||||
RBAM_020960__ 1196 GGTTCGGAGTAAGGCTCAAAGCGGTCGCTCCGTCCATTCATATGATCAAA 1245
BSNT_03390___ 1213 GTCGATGTCGAAAGCGAATTCGCCCCGATTATCGGAACGGAAAAACAAAG 1262
||.|||||.|||||.||||||||.|||||.|||||.||||||||||||||
RBAM_020960__ 1246 GTGGATGTGGAAAGTGAATTCGCGCCGATCATCGGGACGGAAAAACAAAG 1295
BSNT_03390___ 1263 TGAAGAGCTTGTACGCTATTTAATGCAGGACTTTGAGGATGATCCGCTCT 1312
||||||.|||||.||.||.|||||||||||||||||.|||||||||||.|
RBAM_020960__ 1296 TGAAGAACTTGTCCGTTACTTAATGCAGGACTTTGAAGATGATCCGCTTT 1345
BSNT_03390___ 1313 CCATCTGGAATTCCGATATCTTCGGAAGGTCGCTGAGCTCAATTGTGAGA 1362
|.||||||||.||||||||.|||||.||.||..|||||||.||.||.|||
RBAM_020960__ 1346 CTATCTGGAACTCCGATATTTTCGGCAGATCATTGAGCTCTATCGTAAGA 1395
BSNT_03390___ 1363 GAAGGGAT-TCAGGCAAAGCTGTCATTAATGCCTGAAAACGCACGGTATA 1411
|||||.|| || .|||||.||||||.|.|||||.|||||.||..|.||||
RBAM_020960__ 1396 GAAGGAATCTC-CGCAAAACTGTCACTCATGCCGGAAAATGCGAGATATA 1444
BSNT_03390___ 1412 AATTAAAAGAAACATTAGAAAGAATCATAAACGAAGGCTCTGGCGGCTTA 1461
||.|.||||||||..|.||.|||||.||.|||||||||||.||||||.|.
RBAM_020960__ 1445 AACTGAAAGAAACGCTGGAGAGAATTATTAACGAAGGCTCAGGCGGCCTG 1494
BSNT_03390___ 1462 ATCGCCATCATCCTGTAA 1479
||||||||.||..|||||
RBAM_020960__ 1495 ATCGCCATTATTTTGTAA 1512
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.