Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03381 and RBAM_020900

See Amino acid alignment / Visit BSNT_03381 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:35
# Commandline: needle
#    -asequence dna-align/BSNT_03381___hepT.1.9828.seq
#    -bsequence dna-align/RBAM_020900___hepT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03381___hepT-RBAM_020900___hepT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03381___hepT-RBAM_020900___hepT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03381___hepT
# 2: RBAM_020900___hepT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1052
# Identity:     766/1052 (72.8%)
# Similarity:   766/1052 (72.8%)
# Gaps:          91/1052 ( 8.7%)
# Score: 3029.0
# 
#
#=======================================

BSNT_03381___      0 --------------------------------------------------      0
                                                                       
RBAM_020900__      1 ATGTCAAATACCATTCGTTTACCGGCGGAGTGGCCGCTACGCATATCGGT     50

BSNT_03381___      1 -------------------------------------ATGAAATTTAAAA     13
                                                          |||||||||||||
RBAM_020900__     51 TGGAAATGATGAATATACAGATGTTTGGGTGAATGATATGAAATTTAAAA    100

BSNT_03381___     14 TGGCCTACTCTTTTTTAAATGACGATATTGATGTAATCGAAAGAGAACTT     63
                     |||||||.||||||||||||||||||||||||||.||||||||.||.|||
RBAM_020900__    101 TGGCCTATTCTTTTTTAAATGACGATATTGATGTGATCGAAAGGGAGCTT    150

BSNT_03381___     64 GAACAAACCGTACGTTCCGATTACCCGCTTT--TAAGCGAGGCAGGTCTT    111
                     ||.|||||.||.||.||.||.||.|  ||||  |.||.||.||.||.||.
RBAM_020900__    151 GAGCAAACGGTGCGGTCAGACTATC--CTTTGCTGAGTGAAGCCGGGCTC    198

BSNT_03381___    112 CACCTGCTGCAGGCCGGAGGGAAACGTATTCGTCCTGTTTTCGTGCTGCT    161
                     ||.|||||.|||||.||.||.||.||.||.||.|||||||||||..||||
RBAM_020900__    199 CATCTGCTCCAGGCGGGCGGCAAGCGGATCCGCCCTGTTTTCGTATTGCT    248

BSNT_03381___    162 TTCTGGCATGTTTGGCGATTACGATATTAATAAGATTAAATATGTCGCCG    211
                     |||.||||||||.|||||.||.||.||||||||.||.||||||||.||.|
RBAM_020900__    249 TTCCGGCATGTTCGGCGACTATGACATTAATAAAATAAAATATGTTGCGG    298

BSNT_03381___    212 TCACTCTGGAAATGATTCACATGGCATCTTTGGTTCATGATGATGTCATT    261
                     |.||.||||||||||||||.|||||.||..|.||.|||||.||.||||||
RBAM_020900__    299 TGACGCTGGAAATGATTCATATGGCGTCCCTCGTGCATGACGACGTCATT    348

BSNT_03381___    262 GATGATGCAGAGCTTCGCCGAGGAAAACCGACAATCAAAGCAAAGTGGGA    311
                     |||||.||.|||||.||..|.|||||||||||.||||||||.||||||||
RBAM_020900__    349 GATGACGCCGAGCTGCGGAGGGGAAAACCGACCATCAAAGCCAAGTGGGA    398

BSNT_03381___    312 CAATCGTATTGCGATGTACACAGGCGATTATATGCTTGCGGGATCTCTTG    361
                     |||.||.||.||.|||||.||.||.|||||||||||||||||.||.||||
RBAM_020900__    399 CAACCGCATCGCCATGTATACCGGTGATTATATGCTTGCGGGCTCACTTG    448

BSNT_03381___    362 AAATGATGACGAGAATTAACGAACCGAAAGCCCATAGGATTTTGTCACAG    411
                     |.||||||||||||.|..|.||.|||||||||||..||||..||||..|.
RBAM_020900__    449 AGATGATGACGAGATTGGATGAGCCGAAAGCCCACCGGATCCTGTCCAAA    498

BSNT_03381___    412 ACGATCGTTGAAGTTTGTCTAGGGGAAATTGAGCAGATCAAAGACAAATA    461
                     ||.|||||.|||||.||.||.||.||||||||.|||||||.|||.|||||
RBAM_020900__    499 ACCATCGTAGAAGTATGCCTCGGAGAAATTGAACAGATCAGAGATAAATA    548

BSNT_03381___    462 TAACATGGAACAAAATCTCAGAACGTATCTCCGCCGTATCAAAAGAAAAA    511
                     .||.|||||||||||.||||||||.|||.|.|||||.||||||.|.||||
RBAM_020900__    549 CAATATGGAACAAAACCTCAGAACCTATTTGCGCCGCATCAAACGGAAAA    598

BSNT_03381___    512 CAGCTCTCTTGATCGCGGTCAGCTGCCAGCTTGGTGCCATTGCGTCTGGA    561
                     |.|||||..|.||.||.||||||||||||||.||.|||||.||.||.|||
RBAM_020900__    599 CGGCTCTTCTCATTGCCGTCAGCTGCCAGCTCGGCGCCATCGCTTCGGGA    648

BSNT_03381___    562 GCTGATGAGAAGATTCATAAGGCATTGTACTGGTTTGGGTATTACGTCGG    611
                     |||||||||||||||||.||.|||||.||.|||||.||.||||||||.||
RBAM_020900__    649 GCTGATGAGAAGATTCACAAAGCATTATATTGGTTCGGTTATTACGTGGG    698

BSNT_03381___    612 CATGTCTTATCAGATTATTGATGATATTCTTGATTTTACTTCAACTGAAG    661
                     ||||||.||||||||||||||.||.|||||||||||.||||||||.||||
RBAM_020900__    699 CATGTCCTATCAGATTATTGACGACATTCTTGATTTCACTTCAACGGAAG    748

BSNT_03381___    662 AAGAGCTGGGTAAACCCGTTGGAGGAGATTTGCTTCAAGGAAACGTCACA    711
                     |.||.|||||.|||||.||.|||||.|||.||||.||||||||.|||||.
RBAM_020900__    749 AGGAACTGGGAAAACCGGTCGGAGGGGATCTGCTGCAAGGAAATGTCACT    798

BSNT_03381___    712 TTGCCAGTGCTGTATGCCCTGAAAAATCCTGCATTAAAAAACCAGCTTAA    761
                     .||||.||..||||.||.||.....|.||||.|||.|||||.|||||.||
RBAM_020900__    799 CTGCCCGTTTTGTACGCGCTCCGTCAGCCTGAATTGAAAAATCAGCTGAA    848

BSNT_03381___    762 ATTGATTAACAGTGAGACAACGCAGGAGCAGCTTGAACCAATCATTGAAG    811
                     |||.|||||||||||.|||||.|||||||||||.|..||.||.||||||.
RBAM_020900__    849 ATTAATTAACAGTGAAACAACACAGGAGCAGCTCGCCCCCATTATTGAAA    898

BSNT_03381___    812 AAATCAAAAAAACAGATGCAATTGAAGCATCTATGGCAGTAAGCGAAATG    861
                     |.||.|||...|||||.||.||||||..|||.|||||.||.||.||.|.|
RBAM_020900__    899 ATATTAAACGCACAGACGCGATTGAAAAATCAATGGCCGTCAGTGACAGG    948

BSNT_03381___    862 TATCTGCAGAAAGCTTTTCAGAAATTAAACACGCTTCCACGAGGGCGCGC    911
                     ||..|..|.|||||.|||.|.|||.|.||.||.||.||..||||.||.||
RBAM_020900__    949 TACTTAAAAAAAGCGTTTGAAAAACTGAATACACTGCCGAGAGGACGTGC    998

BSNT_03381___    912 ACGCTCGTCTCTTGCAGCCATCGCAAAATATATCGGTAAAAGAAAATTTT    961
                     .|||||.||..|.||.||||||||.|||||||||||.|||.|.|||||||
RBAM_020900__    999 GCGCTCATCATTGGCCGCCATCGCCAAATATATCGGCAAACGGAAATTTT   1048

BSNT_03381___    962 AA    963
                     ||
RBAM_020900__   1049 AA   1050


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