Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03374 and RBAM_020850

See Amino acid alignment / Visit BSNT_03374 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:34
# Commandline: needle
#    -asequence dna-align/BSNT_03374___aroH.1.9828.seq
#    -bsequence dna-align/RBAM_020850___aroH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03374___aroH-RBAM_020850___aroH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03374___aroH-RBAM_020850___aroH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03374___aroH
# 2: RBAM_020850___aroH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 385
# Identity:     285/385 (74.0%)
# Similarity:   285/385 (74.0%)
# Gaps:          23/385 ( 6.0%)
# Score: 1097.0
# 
#
#=======================================

BSNT_03374___      1 ATGATGATTCGCGGAATTCGCGGAGCAACTACAGTTGAACGGGATACTGA     50
                     ||||||||.|||||.||||||||||||||.||.||.||||..||.||.||
RBAM_020850__      1 ATGATGATACGCGGCATTCGCGGAGCAACAACGGTGGAACAAGACACCGA     50

BSNT_03374___     51 AGAAGAAATTTTACAAAAAACTAAACAGCTGTTAGAGAAAATCATAGAAG    100
                     |.|||||||||||.|||||||..|.||||||.|.||.||||||||.|||.
RBAM_020850__     51 ACAAGAAATTTTAGAAAAAACACAGCAGCTGCTTGAAAAAATCATTGAAC    100

BSNT_03374___    101 AAAAT-CATACAAAACCGGAAGATGTTGTTCAAATGCTTCTGTCGGCTAC    149
                     ||||| .||.| ||.||||||||.|||||.||.||.||..|.||.||.||
RBAM_020850__    101 AAAATGGATGC-AAGCCGGAAGACGTTGTACAGATCCTGTTATCCGCCAC    149

BSNT_03374___    150 ACCTGATTTGCACGCTGTTTTCCCGGCAAAAGCTGTTCGCGAGCTTTCAG    199
                     .||||||.|.||..|.||.||.|||||||||||.||.|||...|||||.|
RBAM_020850__    150 GCCTGATATCCATTCCGTATTTCCGGCAAAAGCGGTCCGCCGCCTTTCCG    199

BSNT_03374___    200 GATGGCAGTATGTACCGGTAACATGTATGCAGGAAATGGACGTAACAGGC    249
                     |.||||||||.||.|||||.||.||.||||||||||||||.||.||.|||
RBAM_020850__    200 GGTGGCAGTACGTCCCGGTGACGTGCATGCAGGAAATGGATGTCACCGGC    249

BSNT_03374___    250 GGTCTGAAAAAGTGCATAAGAGTCATGATGACCGTCCAGACAGATGTCCC    299
                     |.||||.|||||||.||..|.|||.|||||||.||.|||||.|||...||
RBAM_020850__    250 GCTCTGCAAAAGTGTATCCGTGTCCTGATGACGGTTCAGACGGATACGCC    299

BSNT_03374___    300 TCAGGATCAGATCAGACATGTATATTTAGAAAAAGCCGTCGTATTGAGGC    349
                     |||||||.|.||||..|||||.|||||||||||||||||.||.||.||||
RBAM_020850__    300 TCAGGATGAAATCAAGCATGTCTATTTAGAAAAAGCCGTTGTGTTAAGGC    349

BSNT_03374___    350 CCGATTTATCATTGACAAAAAATACTGAATTGTAA    384
                     |.||||||||||.|                     
RBAM_020850__    350 CGGATTTATCATAG---------------------    363


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.