Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03366 and RBAM_020800

See Amino acid alignment / Visit BSNT_03366 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:34
# Commandline: needle
#    -asequence dna-align/BSNT_03366___trpB.1.9828.seq
#    -bsequence dna-align/RBAM_020800___trpB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03366___trpB-RBAM_020800___trpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03366___trpB-RBAM_020800___trpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03366___trpB
# 2: RBAM_020800___trpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1203
# Identity:     923/1203 (76.7%)
# Similarity:   923/1203 (76.7%)
# Gaps:           0/1203 ( 0.0%)
# Score: 3495.0
# 
#
#=======================================

BSNT_03366___      1 ATGTATCCATATCCGAATGAAATAGGCAGATACGGTGATTTTGGCGGAAA     50
                     ||||||||||||||.||||||||.||.||||||||.||.||.|||||.||
RBAM_020800__      1 ATGTATCCATATCCAAATGAAATCGGAAGATACGGCGAATTCGGCGGCAA     50

BSNT_03366___     51 GTTTGTTCCGGAAACACTCATGCAGCCGTTAGATGAAATAGAAACAGCAT    100
                     .|||||.||.||||||.|.||||.|||..|.||.|||||.|||||.||.|
RBAM_020800__     51 ATTTGTCCCTGAAACATTGATGCGGCCCCTTGAGGAAATCGAAACGGCTT    100

BSNT_03366___    101 TTAAACAAATCAAGGATGATCCCGCTTTTCGTGAAGAGTATTATAAGCTG    150
                     |.|||.||.|.|||.|||||||||.|||||.||..||.|||.|.|||||.
RBAM_020800__    101 TCAAAGAATTAAAGAATGATCCCGTTTTTCATGCCGAATATAAAAAGCTA    150

BSNT_03366___    151 TTAAAGGACTATTCCGGACGGCCGACTGCATTAACATACGCTGATCGAGT    200
                     ||....||.||.||||||.|.|||||.||||||||.|.|||.||..|.||
RBAM_020800__    151 TTGTTTGATTACTCCGGAAGACCGACCGCATTAACGTTCGCAGACAGGGT    200

BSNT_03366___    201 CACTGAATACTTAGGCGGCGCGAAAATCTATTTGAAACGAGAAGATTTAA    250
                     ..|.||.||.||.||.||.||||||||||||.|||||.||||||||||||
RBAM_020800__    201 GTCAGAGTATTTGGGAGGGGCGAAAATCTATCTGAAAAGAGAAGATTTAA    250

BSNT_03366___    251 ACCATACAGGTTCTCATAAAATCAATAATGCGCTAGGTCAAGCGCTGCTT    300
                     |||||||.||.|||||||||||.||.||.|||.||||.||....||||||
RBAM_020800__    251 ACCATACCGGCTCTCATAAAATTAACAACGCGTTAGGCCAGATTCTGCTT    300

BSNT_03366___    301 GCTAAAAAAATGGGCAAAACGAAAATCATTGCTGAAACCGGTGCCGGCCA    350
                     ||.|||||.||||||||||||||||||||.||.|||||||||||.||.||
RBAM_020800__    301 GCCAAAAAGATGGGCAAAACGAAAATCATCGCCGAAACCGGTGCGGGACA    350

BSNT_03366___    351 GCATGGCGTTGCCGCTGCAACAGTTGCAGCCAAATTCGGCTTTTCCTGTA    400
                     |||.||.||.||.||.|||||||..||.||.||||||||.|||...||||
RBAM_020800__    351 GCACGGTGTGGCTGCCGCAACAGCCGCTGCAAAATTCGGTTTTAAGTGTA    400

BSNT_03366___    401 CTGTGTTTATGGGTGAAGAGGATGTTGCCCGCCAGTCTCTGAACGTTTTC    450
                     |.||.||||||||||||||.||.|||||.||.|||||.||||||||.|||
RBAM_020800__    401 CGGTTTTTATGGGTGAAGAAGACGTTGCGCGTCAGTCGCTGAACGTATTC    450

BSNT_03366___    451 CGCATGAAGCTTCTTGGAGCGGAGGTAGTGCCTGTAACAAGCGGAAACGG    500
                     ||.|||||.||.||.||.|||||.||.|||||.||.||||||||.|||||
RBAM_020800__    451 CGGATGAAACTGCTCGGCGCGGAAGTGGTGCCGGTCACAAGCGGCAACGG    500

BSNT_03366___    501 AACATTGAAGGATGCCACAAATGAGGCGATCCGGTACTGGGTTCAGCATT    550
                     .||..||||.|||||.||.||||||||||||.||||.|||||.|||||||
RBAM_020800__    501 CACGCTGAAAGATGCGACGAATGAGGCGATCAGGTATTGGGTCCAGCATT    550

BSNT_03366___    551 GTGAGGATCACTTTTATATGATTGGATCAGTTGTCGGCCCGCATCCTTAT    600
                     ||||.|||||.||.||..|.||.||.||.||.||.||.||||||||.|||
RBAM_020800__    551 GTGAAGATCATTTCTACCTTATCGGTTCTGTAGTGGGGCCGCATCCGTAT    600

BSNT_03366___    601 CCGCAGGTGGTCCGTGAATTTCAAAAAATGATCGGAGAGGAAGCGAAGGA    650
                     |||.|..|.||.||.||||||||.|||||.|||||.|||||||||||.||
RBAM_020800__    601 CCGTATATCGTTCGCGAATTTCAGAAAATCATCGGCGAGGAAGCGAAAGA    650

BSNT_03366___    651 TCAGTTGAAACGTATTGAAGGCACTCTGCCTGATAAAGTAGTGGCATGTG    700
                     .|||.|....||..|||||||.||.||.||.||.||.||.||.|||||||
RBAM_020800__    651 ACAGCTCCGCCGGGTTGAAGGAACACTCCCGGACAAGGTTGTTGCATGTG    700

BSNT_03366___    701 TAGGCGGAGGAAGCAATGCGATGGGTATGTTTCAGGCATTTTTAAATGAA    750
                     |.|||||.|||||||||||||||||.||.||||||||.||||||.|.|||
RBAM_020800__    701 TCGGCGGCGGAAGCAATGCGATGGGCATTTTTCAGGCCTTTTTAGACGAA    750

BSNT_03366___    751 GATGTTGAACTGATCGGCGCTGAAGCAGCAGGAAAAGGAATTGATACGCC    800
                     |||..|||.|||||||||||.||.||.||.|||||||||||||||||.||
RBAM_020800__    751 GATACTGAGCTGATCGGCGCCGAGGCTGCCGGAAAAGGAATTGATACACC    800

BSNT_03366___    801 TCTTCATGCCGCCACTATTTCGAAAGGAACCGTAGGGGTTATTCACGGTT    850
                     .||.|||||.||.||.||..|.|||||.||..|.|||||.||||||||||
RBAM_020800__    801 GCTGCATGCGGCAACGATCGCAAAAGGGACGCTCGGGGTGATTCACGGTT    850

BSNT_03366___    851 CATTGACTTATCTCATTCAGGATGAGTTCGGGCAAATTATTGAGCCCTAC    900
                     ||.||||.|||.|.||.||.|||.|.|.||||||.|||||.||.||.||.
RBAM_020800__    851 CAATGACCTATTTAATACAAGATCAATACGGGCAGATTATCGAACCGTAT    900

BSNT_03366___    901 TCTATTTCAGCCGGTCTCGACTATCCTGGAATCGGTCCGGAGCATGCATA    950
                     ||.||||||||.||.||.||.||.||.||.||||||||.||||||||.||
RBAM_020800__    901 TCCATTTCAGCAGGCCTTGATTACCCGGGGATCGGTCCTGAGCATGCCTA    950

BSNT_03366___    951 CTTGCATAAGAGCGGCCGTGTCACTTATGACAGTATCACTGATGAAGAAG   1000
                     ..|||||||.|||||||||||.||.||.||.||..|.||.||.||.||||
RBAM_020800__    951 TCTGCATAAAAGCGGCCGTGTAACGTACGAAAGCGTGACAGACGATGAAG   1000

BSNT_03366___   1001 CGGTGGATGCATTAAAGCTTTTGTCAGAAAAAGAGGGGATTTTGCCGGCA   1050
                     ||.|.|..||.|||...||..|.||.||||.|||.||.|||.|.|||||.
RBAM_020800__   1001 CGATTGCCGCGTTACGTCTGCTTTCTGAAACAGAAGGTATTCTTCCGGCT   1050

BSNT_03366___   1051 ATCGAATCTGCCCATGCGTTAGCGAAAGCATTCAAACTCGCCAAAGGAAT   1100
                     ||.|||||||||||.||..|.||.|||||.||..||.|.||.||||..||
RBAM_020800__   1051 ATTGAATCTGCCCACGCTCTGGCCAAAGCGTTTGAAATGGCAAAAGACAT   1100

BSNT_03366___   1101 GGATCGCGGTCAACTCATTCTCGTCTGTTTATCAGGACGGGGAGACAAGG   1150
                     ||||...|...||.|||||||||||.||||.||.|||.|.|||||.||.|
RBAM_020800__   1101 GGATAAAGACAAAATCATTCTCGTCAGTTTGTCGGGAAGAGGAGATAAAG   1150

BSNT_03366___   1151 ATGTCAACACATTAATGAATGTATTGGAAGAAGAGGTGAAAGCCCATGTT   1200
                     ||||..|.||..|.||||||||.||||||.|.|.||||....|.||||||
RBAM_020800__   1151 ATGTTCATACGCTGATGAATGTTTTGGAAAACGGGGTGGGGACACATGTT   1200

BSNT_03366___   1201 TAA   1203
                     |||
RBAM_020800__   1201 TAA   1203


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