Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03366 and RBAM_020800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:34
# Commandline: needle
# -asequence dna-align/BSNT_03366___trpB.1.9828.seq
# -bsequence dna-align/RBAM_020800___trpB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03366___trpB-RBAM_020800___trpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03366___trpB-RBAM_020800___trpB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03366___trpB
# 2: RBAM_020800___trpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1203
# Identity: 923/1203 (76.7%)
# Similarity: 923/1203 (76.7%)
# Gaps: 0/1203 ( 0.0%)
# Score: 3495.0
#
#
#=======================================
BSNT_03366___ 1 ATGTATCCATATCCGAATGAAATAGGCAGATACGGTGATTTTGGCGGAAA 50
||||||||||||||.||||||||.||.||||||||.||.||.|||||.||
RBAM_020800__ 1 ATGTATCCATATCCAAATGAAATCGGAAGATACGGCGAATTCGGCGGCAA 50
BSNT_03366___ 51 GTTTGTTCCGGAAACACTCATGCAGCCGTTAGATGAAATAGAAACAGCAT 100
.|||||.||.||||||.|.||||.|||..|.||.|||||.|||||.||.|
RBAM_020800__ 51 ATTTGTCCCTGAAACATTGATGCGGCCCCTTGAGGAAATCGAAACGGCTT 100
BSNT_03366___ 101 TTAAACAAATCAAGGATGATCCCGCTTTTCGTGAAGAGTATTATAAGCTG 150
|.|||.||.|.|||.|||||||||.|||||.||..||.|||.|.|||||.
RBAM_020800__ 101 TCAAAGAATTAAAGAATGATCCCGTTTTTCATGCCGAATATAAAAAGCTA 150
BSNT_03366___ 151 TTAAAGGACTATTCCGGACGGCCGACTGCATTAACATACGCTGATCGAGT 200
||....||.||.||||||.|.|||||.||||||||.|.|||.||..|.||
RBAM_020800__ 151 TTGTTTGATTACTCCGGAAGACCGACCGCATTAACGTTCGCAGACAGGGT 200
BSNT_03366___ 201 CACTGAATACTTAGGCGGCGCGAAAATCTATTTGAAACGAGAAGATTTAA 250
..|.||.||.||.||.||.||||||||||||.|||||.||||||||||||
RBAM_020800__ 201 GTCAGAGTATTTGGGAGGGGCGAAAATCTATCTGAAAAGAGAAGATTTAA 250
BSNT_03366___ 251 ACCATACAGGTTCTCATAAAATCAATAATGCGCTAGGTCAAGCGCTGCTT 300
|||||||.||.|||||||||||.||.||.|||.||||.||....||||||
RBAM_020800__ 251 ACCATACCGGCTCTCATAAAATTAACAACGCGTTAGGCCAGATTCTGCTT 300
BSNT_03366___ 301 GCTAAAAAAATGGGCAAAACGAAAATCATTGCTGAAACCGGTGCCGGCCA 350
||.|||||.||||||||||||||||||||.||.|||||||||||.||.||
RBAM_020800__ 301 GCCAAAAAGATGGGCAAAACGAAAATCATCGCCGAAACCGGTGCGGGACA 350
BSNT_03366___ 351 GCATGGCGTTGCCGCTGCAACAGTTGCAGCCAAATTCGGCTTTTCCTGTA 400
|||.||.||.||.||.|||||||..||.||.||||||||.|||...||||
RBAM_020800__ 351 GCACGGTGTGGCTGCCGCAACAGCCGCTGCAAAATTCGGTTTTAAGTGTA 400
BSNT_03366___ 401 CTGTGTTTATGGGTGAAGAGGATGTTGCCCGCCAGTCTCTGAACGTTTTC 450
|.||.||||||||||||||.||.|||||.||.|||||.||||||||.|||
RBAM_020800__ 401 CGGTTTTTATGGGTGAAGAAGACGTTGCGCGTCAGTCGCTGAACGTATTC 450
BSNT_03366___ 451 CGCATGAAGCTTCTTGGAGCGGAGGTAGTGCCTGTAACAAGCGGAAACGG 500
||.|||||.||.||.||.|||||.||.|||||.||.||||||||.|||||
RBAM_020800__ 451 CGGATGAAACTGCTCGGCGCGGAAGTGGTGCCGGTCACAAGCGGCAACGG 500
BSNT_03366___ 501 AACATTGAAGGATGCCACAAATGAGGCGATCCGGTACTGGGTTCAGCATT 550
.||..||||.|||||.||.||||||||||||.||||.|||||.|||||||
RBAM_020800__ 501 CACGCTGAAAGATGCGACGAATGAGGCGATCAGGTATTGGGTCCAGCATT 550
BSNT_03366___ 551 GTGAGGATCACTTTTATATGATTGGATCAGTTGTCGGCCCGCATCCTTAT 600
||||.|||||.||.||..|.||.||.||.||.||.||.||||||||.|||
RBAM_020800__ 551 GTGAAGATCATTTCTACCTTATCGGTTCTGTAGTGGGGCCGCATCCGTAT 600
BSNT_03366___ 601 CCGCAGGTGGTCCGTGAATTTCAAAAAATGATCGGAGAGGAAGCGAAGGA 650
|||.|..|.||.||.||||||||.|||||.|||||.|||||||||||.||
RBAM_020800__ 601 CCGTATATCGTTCGCGAATTTCAGAAAATCATCGGCGAGGAAGCGAAAGA 650
BSNT_03366___ 651 TCAGTTGAAACGTATTGAAGGCACTCTGCCTGATAAAGTAGTGGCATGTG 700
.|||.|....||..|||||||.||.||.||.||.||.||.||.|||||||
RBAM_020800__ 651 ACAGCTCCGCCGGGTTGAAGGAACACTCCCGGACAAGGTTGTTGCATGTG 700
BSNT_03366___ 701 TAGGCGGAGGAAGCAATGCGATGGGTATGTTTCAGGCATTTTTAAATGAA 750
|.|||||.|||||||||||||||||.||.||||||||.||||||.|.|||
RBAM_020800__ 701 TCGGCGGCGGAAGCAATGCGATGGGCATTTTTCAGGCCTTTTTAGACGAA 750
BSNT_03366___ 751 GATGTTGAACTGATCGGCGCTGAAGCAGCAGGAAAAGGAATTGATACGCC 800
|||..|||.|||||||||||.||.||.||.|||||||||||||||||.||
RBAM_020800__ 751 GATACTGAGCTGATCGGCGCCGAGGCTGCCGGAAAAGGAATTGATACACC 800
BSNT_03366___ 801 TCTTCATGCCGCCACTATTTCGAAAGGAACCGTAGGGGTTATTCACGGTT 850
.||.|||||.||.||.||..|.|||||.||..|.|||||.||||||||||
RBAM_020800__ 801 GCTGCATGCGGCAACGATCGCAAAAGGGACGCTCGGGGTGATTCACGGTT 850
BSNT_03366___ 851 CATTGACTTATCTCATTCAGGATGAGTTCGGGCAAATTATTGAGCCCTAC 900
||.||||.|||.|.||.||.|||.|.|.||||||.|||||.||.||.||.
RBAM_020800__ 851 CAATGACCTATTTAATACAAGATCAATACGGGCAGATTATCGAACCGTAT 900
BSNT_03366___ 901 TCTATTTCAGCCGGTCTCGACTATCCTGGAATCGGTCCGGAGCATGCATA 950
||.||||||||.||.||.||.||.||.||.||||||||.||||||||.||
RBAM_020800__ 901 TCCATTTCAGCAGGCCTTGATTACCCGGGGATCGGTCCTGAGCATGCCTA 950
BSNT_03366___ 951 CTTGCATAAGAGCGGCCGTGTCACTTATGACAGTATCACTGATGAAGAAG 1000
..|||||||.|||||||||||.||.||.||.||..|.||.||.||.||||
RBAM_020800__ 951 TCTGCATAAAAGCGGCCGTGTAACGTACGAAAGCGTGACAGACGATGAAG 1000
BSNT_03366___ 1001 CGGTGGATGCATTAAAGCTTTTGTCAGAAAAAGAGGGGATTTTGCCGGCA 1050
||.|.|..||.|||...||..|.||.||||.|||.||.|||.|.|||||.
RBAM_020800__ 1001 CGATTGCCGCGTTACGTCTGCTTTCTGAAACAGAAGGTATTCTTCCGGCT 1050
BSNT_03366___ 1051 ATCGAATCTGCCCATGCGTTAGCGAAAGCATTCAAACTCGCCAAAGGAAT 1100
||.|||||||||||.||..|.||.|||||.||..||.|.||.||||..||
RBAM_020800__ 1051 ATTGAATCTGCCCACGCTCTGGCCAAAGCGTTTGAAATGGCAAAAGACAT 1100
BSNT_03366___ 1101 GGATCGCGGTCAACTCATTCTCGTCTGTTTATCAGGACGGGGAGACAAGG 1150
||||...|...||.|||||||||||.||||.||.|||.|.|||||.||.|
RBAM_020800__ 1101 GGATAAAGACAAAATCATTCTCGTCAGTTTGTCGGGAAGAGGAGATAAAG 1150
BSNT_03366___ 1151 ATGTCAACACATTAATGAATGTATTGGAAGAAGAGGTGAAAGCCCATGTT 1200
||||..|.||..|.||||||||.||||||.|.|.||||....|.||||||
RBAM_020800__ 1151 ATGTTCATACGCTGATGAATGTTTTGGAAAACGGGGTGGGGACACATGTT 1200
BSNT_03366___ 1201 TAA 1203
|||
RBAM_020800__ 1201 TAA 1203
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