Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03364 and RBAM_020780

See Amino acid alignment / Visit BSNT_03364 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:34
# Commandline: needle
#    -asequence dna-align/BSNT_03364___hisC.1.9828.seq
#    -bsequence dna-align/RBAM_020780___hisC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03364___hisC-RBAM_020780___hisC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03364___hisC-RBAM_020780___hisC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03364___hisC
# 2: RBAM_020780___hisC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1099
# Identity:     828/1099 (75.3%)
# Similarity:   828/1099 (75.3%)
# Gaps:          32/1099 ( 2.9%)
# Score: 3044.5
# 
#
#=======================================

BSNT_03364___      1 TTGCGTATCAAAGAACATTTAAAACAGCTGAAGCCTTATCAGCCTGGAAA     50
                     ||||..||.||||||||..|....||||||||.||.||||||||.||.||
RBAM_020780__      1 TTGCAGATTAAAGAACAGCTGCGGCAGCTGAAACCGTATCAGCCGGGCAA     50

BSNT_03364___     51 GCCGATTGAAGCAGTGAAATCAGAATA-TGGCTTGGATAAAGTTGTGAAG     99
                     .||.||.||||.|||||||...||||| .||||| ||.|||||.||.||.
RBAM_020780__     51 ACCAATAGAAGAAGTGAAAATGGAATACGGGCTT-GAGAAAGTAGTAAAA     99

BSNT_03364___    100 CTTGCTTCAAACGAGAATCCTTACGGCTGTTCAGAGGCTGCAAAAGAGGC    149
                     ||.|||||.|||||.|||||.|.||||||||||.||||.||.|||||.||
RBAM_020780__    100 CTCGCTTCTAACGAAAATCCGTTCGGCTGTTCACAGGCCGCTAAAGATGC    149

BSNT_03364___    150 GCTTCATCATGAGATTCAACAGCTAGCCCTTTACCCGGACGGGTATAGCG    199
                     |||.|||||.||||||.|.|||||.||.||.||.||.|||||.||.||.|
RBAM_020780__    150 GCTGCATCAGGAGATTGAGCAGCTTGCGCTGTATCCCGACGGTTACAGTG    199

BSNT_03364___    200 CCGCTTTGCGGACAAGGCTCAGTAAGCACCTCAATGTCAGCGAAACATCA    249
                     ||||||||.|.|||.||||||||.||||.||..|.|||||.|||.|.||.
RBAM_020780__    200 CCGCTTTGAGAACACGGCTCAGTGAGCATCTGCAGGTCAGTGAATCTTCG    249

BSNT_03364___    250 CTTATTTTCGGCAACGGTTCTGATGAAATCATTCAGATCATCTGCCGGGC    299
                     .|.||||||||||||||.||||||||..|..|.|||||.||||||||..|
RBAM_020780__    250 ATCATTTTCGGCAACGGCTCTGATGAGCTTGTGCAGATTATCTGCCGTTC    299

BSNT_03364___    300 ATTTCTAAACAATAAAACCAATACGATCACTGCTGCCCCGACTTTTCCGC    349
                     .||..||||..||.|..|.||.|||||.||.||.|||||||||||.||||
RBAM_020780__    300 TTTATTAAATGATCAGGCAAACACGATTACCGCCGCCCCGACTTTCCCGC    349

BSNT_03364___    350 AATATAAACATAATGCGGTTATTGAAGGTGCTGAAGTGCGTGAAATTGCA    399
                     ||||.|.|||.||||||||.||||||||.|||||.|||||.||..||.|.
RBAM_020780__    350 AATACAGACACAATGCGGTGATTGAAGGCGCTGAGGTGCGCGAGGTTCCG    399

BSNT_03364___    400 CTTCGTCCCGACGGCTCACATGATTTAGACGCCATGTTAGAAGCCATCGA    449
                     ||.||....||||||.|.||||||||.|||...|||.|.|||||.||.||
RBAM_020780__    400 CTCCGCAGTGACGGCGCTCATGATTTGGACCGGATGCTGGAAGCAATTGA    449

BSNT_03364___    450 CGAACAGACACAAGTCGTTTGGATATGCAGCCCGAATAATCCGACTGGCA    499
                     ||...||||..||.||.|.|||.||||||.|||.|||||||||||.||.|
RBAM_020780__    450 CGGCGAGACGAAAATCATATGGGTATGCAACCCCAATAATCCGACGGGGA    499

BSNT_03364___    500 CTTATACATCTGA--AGGAG--AATTACTCGCATTTCTGGAGCGCGTTCC    545
                     |.|||||.|||||  |.|||  ||||    ||.|||.|..|..|.|||||
RBAM_020780__    500 CATATACTTCTGAGCAAGAGCTAATT----GCCTTTTTAAACAGAGTTCC    545

BSNT_03364___    546 TTCACG----TGTCCTTGTTGTTCTTGACGAAGCATATTATGAATATGTA    591
                         ||    |.|.||.|||||.|||||.|||||.||.||.||.|||||.
RBAM_020780__    546 ----CGAGCATATACTCGTTGTACTTGATGAAGCGTACTACGAGTATGTT    591

BSNT_03364___    592 ACAGCAGAGGATTACCCGGAAACCGTGCCGCTCTT-AAGCAAGTATTCCA    640
                     ||.||.||.||||||||.||||.|.|.|||||.|| |||||| |||.|.|
RBAM_020780__    592 ACGGCGGAAGATTACCCAGAAAGCATTCCGCTTTTAAAGCAA-TATCCGA    640

BSNT_03364___    641 ATTTGATGATTTTGCGCACATTTTCAAAGGCATACGGTCTGGCAGCGCTC    690
                     ||.|.|||||..|.|||||.||.||.||.||.|||||.||.||.|||||.
RBAM_020780__    641 ATGTTATGATCCTCCGCACCTTCTCTAAAGCGTACGGACTTGCCGCGCTG    690

BSNT_03364___    691 AGAGTCGGATACGGAATTGCTGACGAGAAC-CTGATTCGCCAGATTGAGC    739
                     .|.|||||||||||.|||||.||||| |.| |||||.|||||||||||.|
RBAM_020780__    691 CGCGTCGGATACGGCATTGCGGACGA-AGCGCTGATCCGCCAGATTGAAC    739

BSNT_03364___    740 CGGCGAGAGAGCCGTTTAATACGAGCCGTCTGGGCCAGGCTGCGGCGATT    789
                     ||||||||||||||||.|||||||||.|..|.||.||||||.||||..|.
RBAM_020780__    740 CGGCGAGAGAGCCGTTCAATACGAGCAGAATCGGTCAGGCTTCGGCACTG    789

BSNT_03364___    790 GCCGCACTTGATGATCAAGCGTTTATTGCTTCC-----TGTGTCGAGCAA    834
                     ||.||.||||||||.||..|.||||||     |     ||.||||||.||
RBAM_020780__    790 GCAGCGCTTGATGACCAGACATTTATT-----CAGGAATGCGTCGAGAAA    834

BSNT_03364___    835 AATAATGCAGGCCTTCAGCAGTATTATGATTTTGCGAAAACTCATGGTTT    884
                     |||||.|||||||||.|||||||||||||||||||..|||||||.||.||
RBAM_020780__    835 AATAAAGCAGGCCTTAAGCAGTATTATGATTTTGCAGAAACTCACGGATT    884

BSNT_03364___    885 AAAGTGCTACCCTTCACAGACAAATTTTGTGTTAATTGACTTTAAACGTC    934
                     ||..||.||.||||||||.||.||.||||||.|.|||||.|||||.||.|
RBAM_020780__    885 AACTTGTTATCCTTCACAAACCAACTTTGTGCTCATTGATTTTAACCGCC    934

BSNT_03364___    935 CTGCTGATGAACTGTTTCAGGCTCTGCTGGAAAAAGGCTATATCGTCCGG    984
                     |.||.|||||||||||.||.||.|||.||||||||||.|||||||||||.
RBAM_020780__    935 CGGCGGATGAACTGTTCCAAGCCCTGTTGGAAAAAGGATATATCGTCCGC    984

BSNT_03364___    985 TCAGGAAATGCATTAGGTTTCCCGACATCACTCCGGATTACGATCGGAAC   1034
                     ||||||.|.||..|.||.||.||||||.|..|..||||||||.||||.||
RBAM_020780__    985 TCAGGACAGGCGCTCGGATTTCCGACAGCGTTAAGGATTACGGTCGGTAC   1034

BSNT_03364___   1035 AAAAGAGCAAAATGAAGAAATACTTGCCATTTTAGCTGAAATTTTATAA   1083
                     .||||||||.|||||.|||||.||..|.||||||||||||||.||||||
RBAM_020780__   1035 GAAAGAGCAGAATGAGGAAATTCTCACAATTTTAGCTGAAATATTATAA   1083


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