Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03348 and RBAM_020640

See Amino acid alignment / Visit BSNT_03348 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_03348___dapB.1.9828.seq
#    -bsequence dna-align/RBAM_020640___dapB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03348___dapB-RBAM_020640___dapB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03348___dapB-RBAM_020640___dapB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03348___dapB
# 2: RBAM_020640___dapB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 810
# Identity:     645/810 (79.6%)
# Similarity:   645/810 (79.6%)
# Gaps:          12/810 ( 1.5%)
# Score: 2561.5
# 
#
#=======================================

BSNT_03348___      1 ATGTCAAACGAAACAATTAAAGTAGTCATTGCGGGACCGCGTGGAAGAAT     50
                     ||||||||.|||||.||||||||.||||||||.||||||.|.||.|||||
RBAM_020640__      1 ATGTCAAATGAAACCATTAAAGTCGTCATTGCCGGACCGAGAGGCAGAAT     50

BSNT_03348___     51 GGGGCAGGAAGCTGTTAAATTGGCAGAACGAACACCTCATTTTGACCTTG    100
                     |||.|||||.||.||.|||.|.||.|..||.||.|||||||||||.||||
RBAM_020640__     51 GGGCCAGGAGGCCGTAAAACTTGCCGTCCGCACGCCTCATTTTGAGCTTG    100

BSNT_03348___    101 TCGGGGCCATAGACCATACATACGATCAGCAAAAATTATCTGATGTGATG    150
                     ||||.|||||.||||||||||||||||||||||.|||....||.||||||
RBAM_020640__    101 TCGGCGCCATTGACCATACATACGATCAGCAAACATTGCGGGAAGTGATG    150

BSNT_03348___    151 CCTGTTGAGTCAGATGCTTTCATTTACACAGATATCCATGCCTGCTTTAC    200
                     .|.|.|||.|||||.|||.|.|||||.||.|||||||..||.|| |||.|
RBAM_020640__    151 TCAGCTGATTCAGACGCTCTTATTTATACGGATATCCGCGCATG-TTTCC    199

BSNT_03348___    201 -AGAAACACAACCGGATGTCTTGATTGATTTAACAACGCCCGAAATCGGA    249
                      |||||||.||||||||||..||||.|||||.||||||||.||||||||.
RBAM_020640__    200 AAGAAACAAAACCGGATGTGCTGATCGATTTGACAACGCCTGAAATCGGC    249

BSNT_03348___    250 AAAGTACATACAAAAATTGCATTAGAGCACGGAGTCCGTCCAGTTGTCGG    299
                     |||..||||||.|||...||..|.||.|||||.|||||.||.|||||.||
RBAM_020640__    250 AAAAAACATACGAAAGCCGCTCTTGAACACGGCGTCCGCCCCGTTGTGGG    299

BSNT_03348___    300 AACAACCGGTTTCTCAGAAGCTGATTTAAAAGAGC-TCACATCTTTAACA    348
                     |||.|||||.||.||.|||||.||||||.|.|||| ||| |.|.||.||.
RBAM_020640__    300 AACGACCGGATTTTCTGAAGCGGATTTAGAGGAGCTTCA-AGCCTTGACT    348

BSNT_03348___    349 GAAGAAAAAGGGATCGGAGCCATCATCGCGCCAAATTTTGCGCTCGGTGC    398
                     |||||||||||.|||||.|||||||||||.||.||.|||||..|.||.||
RBAM_020640__    349 GAAGAAAAAGGAATCGGCGCCATCATCGCTCCGAACTTTGCATTGGGCGC    398

BSNT_03348___    399 GATACTGATGATGAAATTTTCAAAAATGGCTGCCAACTATTTTGAGGATG    448
                     |.|.|||||||||||.||.|||.|||||||.||||||||||||||.||||
RBAM_020640__    399 GGTGCTGATGATGAAGTTCTCACAAATGGCCGCCAACTATTTTGAAGATG    448

BSNT_03348___    449 TTGAGATTATTGAGCTTCATCATGACCAGAAGCTTGACGCACCAAGCGGA    498
                     |.||.||.|||||.|||||||||||.||.|||||.||.||.||.||||||
RBAM_020640__    449 TAGAAATCATTGAACTTCATCATGATCAAAAGCTGGATGCCCCGAGCGGA    498

BSNT_03348___    499 ACTGCGCTTAAAACAGCGGAAATGATTTCAGAAGTCCGTAAAGAAAAGCA    548
                     ||.|||||.|||||||||||||||||.|||...|||||||.|||||||||
RBAM_020640__    499 ACGGCGCTGAAAACAGCGGAAATGATCTCAAGCGTCCGTACAGAAAAGCA    548

BSNT_03348___    549 GCAAGGACATCCGGATGAAAAAGAAATTCTCCCAGGAGCAAGAGGAGCGG    598
                     |||.||.|||||.|||||||||||||||||.|||||.||..|.||.||.|
RBAM_020640__    549 GCAGGGCCATCCTGATGAAAAAGAAATTCTGCCAGGCGCCCGCGGTGCTG    598

BSNT_03348___    599 AGCAAAACGGCATTCGCTTGCACAGCGTCCGTCTTCCGGGACTGATCGCG    648
                     |...|||||||||.|||.|.||||||||.|||||.|||||.||.|||||.
RBAM_020640__    599 AATTAAACGGCATCCGCCTTCACAGCGTGCGTCTGCCGGGCCTTATCGCC    648

BSNT_03348___    649 CATCAGGAGGTCATGTTCGGCATGGATGGCCAAACGCTTCAGATACGCCA    698
                     ||.|||||.|||||||||||||||||.|||||.|||||..|..|.|||||
RBAM_020640__    649 CACCAGGAAGTCATGTTCGGCATGGACGGCCAGACGCTGAAACTGCGCCA    698

BSNT_03348___    699 TGATTCTTATAACCGGGCTTCTTTCATGTCAGGCGTTAAACTGTCAGTCG    748
                     |||.||.||||||||||||||.||.||||||||.||.||.||||||||.|
RBAM_020640__    699 TGACTCCTATAACCGGGCTTCCTTTATGTCAGGAGTAAAGCTGTCAGTGG    748

BSNT_03348___    749 AACAAGTCATGAAGATTGATCAGCTTGTGTACGGTTTAGAAAATATCAT-    797
                     |.|||||.|||||.||.||.||||||||.|||||..|.||||||||.|| 
RBAM_020640__    749 AGCAAGTGATGAAAATCGACCAGCTTGTATACGGACTCGAAAATATTATC    798

BSNT_03348___    798 ---TGATTAG    804
                        |||    
RBAM_020640__    799 GACTGA----    804


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