Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03334 and RBAM_020520

See Amino acid alignment / Visit BSNT_03334 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:30
# Commandline: needle
#    -asequence dna-align/BSNT_03334___aspB.1.9828.seq
#    -bsequence dna-align/RBAM_020520___aspB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03334___aspB-RBAM_020520___aspB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03334___aspB-RBAM_020520___aspB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03334___aspB
# 2: RBAM_020520___aspB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1190
# Identity:     932/1190 (78.3%)
# Similarity:   932/1190 (78.3%)
# Gaps:          16/1190 ( 1.3%)
# Score: 3608.0
# 
#
#=======================================

BSNT_03334___      1 TTGAAACTGGCAAAAAGAGTATCCGCATTAACACCATCAACCACACTGGC     50
                     ||||||.||||||||||||||||||||||||||||.||..|.|||||.||
RBAM_020520__      1 TTGAAATTGGCAAAAAGAGTATCCGCATTAACACCGTCTGCAACACTTGC     50

BSNT_03334___     51 AATCACAGCGAAAGCGAAAGAACTGAAAGCCGCAGGCCATGATGTCATCG    100
                     |||.||.||.|||||||||||.||||||||.|.|||||||||||||||||
RBAM_020520__     51 AATTACTGCAAAAGCGAAAGAGCTGAAAGCAGAAGGCCATGATGTCATCG    100

BSNT_03334___    101 GCTTAGGAGCAGGCGAGCCTGACTTCAATACACCGCAGCATATTATTGAT    150
                     ||.|.||||||||.||.||.||.||.|||||.||.|||||.|||||.|||
RBAM_020520__    101 GCCTCGGAGCAGGAGAACCGGATTTTAATACGCCTCAGCACATTATAGAT    150

BSNT_03334___    151 GCCGCTGTGCGTTCGATGAACGAGGGCCATACGAAATACACGCCTTCCGG    200
                     |||||.||||||||.|||||.||.||||||||||||||.||||||||.||
RBAM_020520__    151 GCCGCGGTGCGTTCCATGAATGAAGGCCATACGAAATATACGCCTTCAGG    200

BSNT_03334___    201 TGGTTTGGCTGAACTGAAAAACAGCATTGCAGAGAAATTTAAACGCGACC    250
                     .|||.||.|.|..||||||.||||.||.|||.|.|||||.|||..|||||
RBAM_020520__    201 CGGTCTGCCGGCGCTGAAAGACAGTATCGCAAAAAAATTCAAAAACGACC    250

BSNT_03334___    251 AGAATATTGAATACAAACCGTCTCAAATTATTGTCTGCACTGGTGCCAAA    300
                     ||...||||||||.||.|||||..||||.|||||||||||.||.||.|||
RBAM_020520__    251 AGGGGATTGAATATAAGCCGTCAGAAATCATTGTCTGCACCGGAGCGAAA    300

BSNT_03334___    301 CATGCTCTGTATACCCTTTTCCAAGTGATTTTGGATGAAGAAGATGAAGT    350
                     ||.|||||||||||..|.||.||.||.|||.|.|||||||..||.|||||
RBAM_020520__    301 CACGCTCTGTATACATTATTTCAGGTTATTCTCGATGAAGGGGACGAAGT    350

BSNT_03334___    351 TATTATTCCAACGCCTTACTGGGTAAGCTACCCGGAGCAGGTGAAACTCG    400
                     .|||||.||.||.|||||||||||.||||||||.||||||||||||||.|
RBAM_020520__    351 GATTATACCGACTCCTTACTGGGTCAGCTACCCTGAGCAGGTGAAACTGG    400

BSNT_03334___    401 CTGGCGGAAAGCCTGTTTATGTAGAAGGGCTTGAGGAA---AATCACTTC    447
                     |.||.||....||.||.||||.|||||||||   ||||   |||||.||.
RBAM_020520__    401 CAGGGGGGCGTCCCGTCTATGCAGAAGGGCT---GGAATCCAATCAGTTT    447

BSNT_03334___    448 AAAATTTCGCCTGAGCAGCTGAAAAATGCAATTACGGAAAAAACAAAAGC    497
                     ||||||||.||.|||||||||||..|.||.||.|||||.|||||||||||
RBAM_020520__    448 AAAATTTCACCGGAGCAGCTGAAGCAGGCTATCACGGAGAAAACAAAAGC    497

BSNT_03334___    498 AATCGTTATTAACTCTCCAAGCAACCCGACTGGTGTCATGTATACGGAAG    547
                     ..||.||||.||.||.||.|||||||||||.|||||.|||||||||.|||
RBAM_020520__    498 GCTCATTATCAATTCACCGAGCAACCCGACAGGTGTTATGTATACGAAAG    547

BSNT_03334___    548 AAGAACTATCTGCG---CTCGGTGAAGTGTGCCTTGAACATGATATCTTG    594
                     ||||.||   ||||   |||||..|||||||.||.||.||||..||..||
RBAM_020520__    548 AAGAGCT---TGCGGAACTCGGAAAAGTGTGTCTGGAGCATGGCATTCTG    594

BSNT_03334___    595 ATTGTGTCAGATGAAATTTATGAAAAACTTACATACGGCGGAAAGAAACA    644
                     ||.||.||.||.||.||||||||.||.|||||||||||.|||||.|||||
RBAM_020520__    595 ATCGTTTCTGACGAGATTTATGAGAAGCTTACATACGGAGGAAAAAAACA    644

BSNT_03334___    645 TGTTTCCATTGCACAGCTGTCAGACAGACTGAAAGAACAAACGGTCATTA    694
                     .||.||.||.||||||||.||||....|.|||||||.||.|||.||||.|
RBAM_020520__    645 CGTCTCAATCGCACAGCTTTCAGGTGAATTGAAAGAGCAGACGATCATCA    694

BSNT_03334___    695 TAAACGGCGTATCGAAGTCCCACAGCATGACAGGTTGGAGAATCGGTTAT    744
                     |.||||||||.|||||.||.|||||||||||.||.|||||.|||||.|||
RBAM_020520__    695 TTAACGGCGTGTCGAAATCTCACAGCATGACGGGCTGGAGGATCGGCTAT    744

BSNT_03334___    745 GCGGCAGGCTCTGAAGAC-ATTATTAAAGCGATGACGAACCTTGCAAGCC    793
                     |||||.||.|| |.|||| |||||||||||||||||||.||||||.||||
RBAM_020520__    745 GCGGCGGGTTC-GGAGACGATTATTAAAGCGATGACGAGCCTTGCGAGCC    793

BSNT_03334___    794 ACAGCACGTCAAACCCGACATCAATCGCACAATACGGAGCGATTGCTGCT    843
                     |||||||.|||||.|||||.||.|||||.||||||||.||.|||||.||.
RBAM_020520__    794 ACAGCACATCAAATCCGACGTCCATCGCTCAATACGGCGCTATTGCGGCC    843

BSNT_03334___    844 TATAACGGGCCTTCTGAGCCATTGGAAGAAATGAGAGAAGCATTTGAACA    893
                     |||||||||||..|||||||..|||||||.||||||.|.||||||||.||
RBAM_020520__    844 TATAACGGGCCGGCTGAGCCGCTGGAAGAGATGAGACAGGCATTTGAGCA    893

BSNT_03334___    894 TAGATTAAATACGATCTATGCAAAGCTCATAGAAATCCCAGGGTTCAGCT    943
                     .|||.|.||.||.||.||.||..||||||..||.||.||.||.||||.||
RBAM_020520__    894 CAGACTGAACACCATTTACGCTCAGCTCAGTGAGATTCCCGGATTCACCT    943

BSNT_03334___    944 GTGTGAAGCCGGAAGGTGCTTTTTACTTATTCCCAAATGCAAAAGAGGCA    993
                     ||||.|||||.|||||.||.||||||||.|||||.||.||.||||.|||.
RBAM_020520__    944 GTGTCAAGCCTGAAGGGGCGTTTTACTTGTTCCCTAACGCCAAAGCGGCC    993

BSNT_03334___    994 GCTCAATCTTGCGGTTTCAAAGATGTAGATGAATTTGTTAAAGCGCTTCT   1043
                     ||..||...||.||.|||||||||||.|||||||..||.||.||||||||
RBAM_020520__    994 GCAGAAAACTGTGGATTCAAAGATGTCGATGAATACGTCAAGGCGCTTCT   1043

BSNT_03334___   1044 CGAGGAGGAAAAAGTTGCGATTGTTCCAGGATCCGGATTTGGCTCTCCTG   1093
                     .||.||.||||||||.||..|.||.||.||.||.||.||.||.||.||.|
RBAM_020520__   1044 GGAAGAAGAAAAAGTCGCCGTCGTGCCGGGCTCGGGTTTCGGTTCACCGG   1093

BSNT_03334___   1094 AGAATGTCCGTCTT-TCTTATGCAACATCGTTAGATCTTCTTGAAAAAGC   1142
                     |.||.||||| ||| |||||.|||||.||..|.||||||.|.|||.||||
RBAM_020520__   1094 ACAACGTCCG-CTTATCTTACGCAACGTCACTCGATCTTTTAGAAGAAGC   1142

BSNT_03334___   1143 CATTGAAAGAATCAAGCGTTTTGTAGAAAAACATAGCTAA   1182
                     ..|.|||||||||...||.||....||||||||.||||.|
RBAM_020520__   1143 GGTCGAAAGAATCCGCCGCTTCACGGAAAAACACAGCTGA   1182


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