Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03323 and RBAM_020460
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:29
# Commandline: needle
# -asequence dna-align/BSNT_03323___recU.1.9828.seq
# -bsequence dna-align/RBAM_020460___recU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03323___recU-RBAM_020460___recU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03323___recU-RBAM_020460___recU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03323___recU
# 2: RBAM_020460___recU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 626
# Identity: 516/626 (82.4%)
# Similarity: 516/626 (82.4%)
# Gaps: 22/626 ( 3.5%)
# Score: 2170.0
#
#
#=======================================
BSNT_03323___ 1 GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTC 50
|||||||||||.||.||.||||||||.|||||||||||..|..|||||||
RBAM_020460__ 1 GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTC 50
BSNT_03323___ 51 ATCCCAAAACAGTCAGAAAAGGGCCCCGTCTTACAGTAATCGCGGAATGA 100
||||||||||||.||||||.||.|.|..||.||||||||||||||.||||
RBAM_020460__ 51 ATCCCAAAACAGCCAGAAACGGTCTCATTCATACAGTAATCGCGGCATGA 100
BSNT_03323___ 101 CCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAA 150
||||||||||.|||.|.||.|||||||||||||||||||||.|.||||||
RBAM_020460__ 101 CCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAA 150
BSNT_03323___ 151 ATTGCCGTTATACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCA 200
|||||.||.||.|||||||||||||||||.||.||.||||||||.|||||
RBAM_020460__ 151 ATTGCTGTCATTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCA 200
BSNT_03323___ 201 TTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTACTTTAAACAAT 250
.|||||.||||||||.||||||||.|||||.||||||||.||||||||.|
RBAM_020460__ 201 CTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTATTTTAAACAGT 250
BSNT_03323___ 251 CATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTT 300
|.||.|||||.||||||||.||.|||||.||||||||.||.|||||||||
RBAM_020460__ 251 CTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTT 300
BSNT_03323___ 301 GAGGCGAAAGAAACGAAAAACAAGACCTCTTTCCCCCTGCAGAATTTTCA 350
|||||.||||||||.||||||||.||..|.||.|||||||||||||||||
RBAM_020460__ 301 GAGGCAAAAGAAACAAAAAACAAAACGGCATTTCCCCTGCAGAATTTTCA 350
BSNT_03323___ 351 TGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCT----CAAGACGGT 396
|||.||||||||.||||||||||||||||| |.| ||||||||.
RBAM_020460__ 351 TGATCATCAAATTGAGCATATGAAGCAGGT----GGTCAGACAAGACGGC 396
BSNT_03323___ 397 ATTTGTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGC 446
||||||||||||||||||||||||||||...||||.|||||..|.|||||
RBAM_020460__ 397 ATTTGTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGC 446
BSNT_03323___ 447 CGATAAGCTGTTT-TATTTCTGGGACAGAAAAGAAAAAAACGGCAGAAAA 495
|||.||||||||| |.||| |||||.|||||.||.||.||.|||||||||
RBAM_020460__ 447 CGACAAGCTGTTTGTCTTT-TGGGAGAGAAAGGAGAACAATGGCAGAAAA 495
BSNT_03323___ 496 TCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGG 545
||||||||.|||||.||.||.|||||..|..|.|.||||||||..|||||
RBAM_020460__ 496 TCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGG 545
BSNT_03323___ 546 ATACGCACCCAGAATTGATTATATTAGTATTATTGAACAGCTTTATTTTT 595
||||.||||.||||||||||||||||||||||||||||||||||||||||
RBAM_020460__ 546 ATACTCACCGAGAATTGATTATATTAGTATTATTGAACAGCTTTATTTTT 595
BSNT_03323___ 596 CGCCATCATCTGGTGCGAAAGGTTGA 621
||| ..|||..||.|
RBAM_020460__ 596 CGC-----------AGGAACAGTAG- 609
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