Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03314 and RBAM_020400

See Amino acid alignment / Visit BSNT_03314 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:29
# Commandline: needle
#    -asequence dna-align/BSNT_03314___yppG.1.9828.seq
#    -bsequence dna-align/RBAM_020400___yppG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03314___yppG-RBAM_020400___yppG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03314___yppG-RBAM_020400___yppG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03314___yppG
# 2: RBAM_020400___yppG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 457
# Identity:     270/457 (59.1%)
# Similarity:   270/457 (59.1%)
# Gaps:         101/457 (22.1%)
# Score: 708.5
# 
#
#=======================================

BSNT_03314___      1 ATG-AACGG------GAGC--TCTCGAAGCTAT---CC-----TCGGCAA     33
                     ||| ||.||      ||||  |.|| ||..|||   ||     .||||  
RBAM_020400__      1 ATGCAATGGAGAGCAGAGCCATATC-AAAATATGTACCAGCAGCCGGC--     47

BSNT_03314___     34 ATGGGCTATTATTATCCTCAGCATATGCAAGGATATTATCAGCAG-----     78
                       |||.||||..||.||.|||||.||.||  |..|||| ||||||     
RBAM_020400__     48 --GGGATATTTCTACCCGCAGCAGATACA--GCCATTA-CAGCAGCCGTA     92

BSNT_03314___     79 ---GCTGCA-------CCCGGTTATTTAGAGCAACAACTGCC---TCAGC    115
                        ||.|||       ||     |||    |||.||.|.|||   |||.|
RBAM_020400__     93 TCCGCAGCAGATACAGCC-----ATT----GCAGCAGCCGCCATATCATC    133

BSNT_03314___    116 AGCA---------------------TTAT-GGACAGCAGGATTA-----T    138
                     ||||                     |||| .|| |.|||||.||     .
RBAM_020400__    134 AGCAAGGGCAGTACCCGCAGCAATTTTATCCGA-ATCAGGAATACGGTCA    182

BSNT_03314___    139 TAT-CAGCC----TTATGCTCCGATC-----------CAGCCTATGCCTA    172
                     ||| |||||    || |||||| .||           |||.| |||||..
RBAM_020400__    183 TATGCAGCCGCCGTT-TGCTCC-CTCTCCTCCTCAGGCAGGC-ATGCCCG    229

BSNT_03314___    173 TGCAGCCGCCTGTATTTTCTAACCCTTATCCTATCCCAAGGCCTAATCAA    222
                     .|..||.|||.|..|||...||.|||||.||..|.||.||.||.|||||.
RBAM_020400__    230 GGGGGCAGCCGGGGTTTGTGAATCCTTACCCCGTTCCCAGACCGAATCAG    279

BSNT_03314___    223 CAGCAGCCTTCACAATT-TCAAAGCATTATGTCGCAGTTCAAAAAAGCCA    271
                     ||||||.||||.||||| || |.||||..|.||.|||||.||||||.|.|
RBAM_020400__    280 CAGCAGTCTTCCCAATTCTC-AGGCATACTCTCCCAGTTTAAAAAAACGA    328

BSNT_03314___    272 ATGGGCAATTTGATTTTAATAAAATGATGGATACGACAGGTCAAGTAATG    321
                     |.||.||.|||||.||||||||||||||.|||||.||.||.||..|..|.
RBAM_020400__    329 ACGGACAGTTTGACTTTAATAAAATGATAGATACAACGGGGCAGATGGTA    378

BSNT_03314___    322 AGTGCAATGAATCAGGTCGGATCTTTAATAAAGGGATTTACCAGCTTTTT    371
                     ||.||..|.||||||||||||||..|..|.||.||.||.|||||..|.||
RBAM_020400__    379 AGCGCCGTAAATCAGGTCGGATCGCTGGTGAAAGGCTTCACCAGTATCTT    428

BSNT_03314___    372 TAAATGA    378
                     .||||.|
RBAM_020400__    429 CAAATAA    435


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