Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03289 and RBAM_020260

See Amino acid alignment / Visit BSNT_03289 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_03289___xpt.1.9828.seq
#    -bsequence dna-align/RBAM_020260___xpt.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03289___xpt-RBAM_020260___xpt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03289___xpt-RBAM_020260___xpt.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03289___xpt
# 2: RBAM_020260___xpt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 592
# Identity:     434/592 (73.3%)
# Similarity:   434/592 (73.3%)
# Gaps:          14/592 ( 2.4%)
# Score: 1520.5
# 
#
#=======================================

BSNT_03289___      1 ATGGAAGCACTGAAACGGAAAATAGAGGAAGAAGGCGTCGTATTATCTGA     50
                     .|||||||..|.|||||.|||||||..|||||.||..||||..|.|||||
RBAM_020260__      1 GTGGAAGCGTTAAAACGAAAAATAGCAGAAGACGGAATCGTTCTTTCTGA     50

BSNT_03289___     51 TCAGGTATTGAAAGTGGATTCTTTTTTGAATCACCAAATTGATCCGCTGC    100
                     |||.||..|||||||||||||||||||.||.||.||||||||||||.|.|
RBAM_020260__     51 TCAAGTGCTGAAAGTGGATTCTTTTTTAAACCATCAAATTGATCCGGTTC    100

BSNT_03289___    101 TTATGCAG-AGAGTTGGTGACGAATTTGCGTCCAGATTTGCAAAAGACGG    149
                     |.|||||| ||| |.||....|||||||||..|.|.||||.||||||||.
RBAM_020260__    101 TCATGCAGCAGA-TCGGCCGGGAATTTGCGCGCCGTTTTGAAAAAGACGA    149

BSNT_03289___    150 TATTACCAAAATTGTGACAATCGAATCATCAGGTATTGCTCCCGCTGTAA    199
                     .||.||||||||.||.|||||.|||||.||.||.|||||.||.||.||.|
RBAM_020260__    150 GATAACCAAAATCGTCACAATTGAATCTTCCGGCATTGCCCCTGCGGTGA    199

BSNT_03289___    200 T-GACGGGCTTGAAGCTGGGTGTGCCAGTTGTCTTCGCGAGAAAGCATAA    248
                     | |.|||.|||||| ||.||.||.||.||..||||.||||||||....||
RBAM_020260__    200 TGGCCGGCCTTGAA-CTCGGCGTTCCCGTCATCTTTGCGAGAAAAAGGAA    248

BSNT_03289___    249 ATCGTTAACACTCACCGACAACTTGCTGACAGCGTCTGTTTATTCCTTTA    298
                     .||..|.|||.|.||.||..|..|||||||.||.||.||.|||||.||.|
RBAM_020260__    249 GTCTCTCACATTAACGGATGATCTGCTGACGGCATCCGTCTATTCTTTCA    298

BSNT_03289___    299 CGAAGCAAACAGAAAGCCAAATCGCAGTGTCTAGGACCCACCTGTCGGAA    348
                     ||||..||||||||||.||.||.|||.|.||..|.|..||.||||||.||
RBAM_020260__    299 CGAAAAAAACAGAAAGTCAGATTGCAATCTCCGGAAATCATCTGTCGAAA    348

BSNT_03289___    349 CAGGATCATGTGCTGATTATCGATGATTTTTTGGCAAATGGACAGGCAGC    398
                     .|.||.|..|||.|.||.||.||.||.|||||.||.||.||||||||.||
RBAM_020260__    349 GATGACCGCGTGTTAATCATTGACGACTTTTTAGCGAACGGACAGGCGGC    398

BSNT_03289___    399 GCACGGGCTTGTGTCGATTGTGAAGCAAGCGGGAGCTTCTA-----TTGC    443
                     ..|.||.|||.|.||.||.||.||.|||||.||.||    |     ||||
RBAM_020260__    399 AGAAGGACTTTTATCCATCGTAAAACAAGCAGGTGC----AGCGGTTTGC    444

BSNT_03289___    444 GGGAATTGGCATTGTTATTGAAAAGTCATTTCAGCCGGGAAGAGAAGAAC    493
                     ||| ||.||.||.||.|||||||||||||||||||||||||||||.||.|
RBAM_020260__    445 GGG-ATCGGAATCGTCATTGAAAAGTCATTTCAGCCGGGAAGAGATGAGC    493

BSNT_03289___    494 TTGTGAAACTGGGCTACCGAGTGGAATCTTTGGCAAGAATTCAGTCTTTA    543
                     |.||||||...||.|.|||.||.|||||..||||.|||||.||.||..|.
RBAM_020260__    494 TGGTGAAAAAAGGATGCCGGGTCGAATCACTGGCGAGAATCCAATCGCTT    543

BSNT_03289___    544 GAAGAAGGAAAAGTGTCCTTCGTACAGGAGGTTCATTCATGA    585
                     |||||.|||||||||.|.||.|||||||||||.|.|||||||
RBAM_020260__    544 GAAGACGGAAAAGTGACATTTGTACAGGAGGTCCGTTCATGA    585


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