Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00959 and RBAM_020230
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_00959.1.9828.seq
# -bsequence dna-align/RBAM_020230___ydfR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00959-RBAM_020230___ydfR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00959-RBAM_020230___ydfR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00959
# 2: RBAM_020230___ydfR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 602
# Identity: 228/602 (37.9%)
# Similarity: 228/602 (37.9%)
# Gaps: 283/602 (47.0%)
# Score: 672.0
#
#
#=======================================
BSNT_00959 0 -------------------------------------------------- 0
RBAM_020230__ 1 ATGAGATTTGCTTGGGAAGAATTAATTATAATTGCATTCGGAATGATTTT 50
BSNT_00959 0 -------------------------------------------------- 0
RBAM_020230__ 51 ACTGAGAATTTCAGGGAGAAAATCCATTGCACAAATGACCATTGCACAGA 100
BSNT_00959 0 -------------------------------------------------- 0
RBAM_020230__ 101 CAATGGTCATGATTTCAATCGGTACGATTATCGTTCACCCCATTTTAGAA 150
BSNT_00959 0 -------------------------------------------------- 0
RBAM_020230__ 151 ACCAGTTTATTGAAAACATTAATCGCTGCGTCTATCCTTTTTAGCGCTTT 200
BSNT_00959 1 ----------------------------------------------ATGT 4
.|.|
RBAM_020230__ 201 GATTTTAATGGAGTGGTTTCAAGTAAAAGTAAACTGGATTGAATCTTTTT 250
BSNT_00959 5 TGACCGGAGAAGCAAAAGTTGTTATTGAAAACGGACAGCTTCATATCGAA 54
|.||||||.||.|.|||.|.|||||.|||.||||.||.||..||||.|||
RBAM_020230__ 251 TAACCGGAAAATCTAAATTCGTTATAGAAGACGGCCAACTCAATATAGAA 300
BSNT_00959 55 AACTTAAAGAAGATGAGACTTACAGTTGATCAGCTTGAAATGCAGCTACG 104
||||||||||||.||||.||.||||..|||||.||.|||||||...||.|
RBAM_020230__ 301 AACTTAAAGAAGCTGAGGCTGACAGCAGATCAACTCGAAATGCGTTTAAG 350
BSNT_00959 105 GCTTCACGGCGTTACGGGTAT----ACAAGATGTCAAAATTGCGACATTA 150
|||||..|||.||.|...||| |||| |.|||..|||.||.|||
RBAM_020230__ 351 GCTTCTTGGCATTTCAAATATAAACACAA----TTAAATATGCCACTTTA 396
BSNT_00959 151 GAGGCAAACGGGCAATTAGGAATTGAATTGACTGATGACGCCAAGCCTTT 200
||.||.||.||.||||||||....|||||.|..|||||....||||||||
RBAM_020230__ 397 GAAGCTAATGGACAATTAGGCTACGAATTAAAAGATGATTGTAAGCCTTT 446
BSNT_00959 201 AACAGTCAGGGATCTGAAAAAACTCATTCA-CCCCGATTTCATAAATAAG 249
|||..|||..|||||.|||||..|.||..| ||...||.||.|||..|||
RBAM_020230__ 447 AACCATCAAAGATCTTAAAAATGTGATCGATCCAAAATGTCTTAACAAAG 496
BSNT_00959 250 GACGGACAAGCC-CAGTCTGGCAATCAG-----------AATATTTTTGA 287
|||| |||.|| |||..|| |||||.||.||
RBAM_020230__ 497 --------AGCCTCAGCCT--CAAAAAGATGATCAAGCCAATATATTCGA 536
BSNT_00959 288 TGAAGTTGGCAAAAAAAATAAAA---AAAACGTCCCTAAAAAGCTGCATT 334
.|||.| |||||||.|..|.| |..||...||.|||||.||..|.|
RBAM_020230__ 537 GGAAAT---CAAAAAACACCAGACTCAGCACAAGCCAAAAAATCTTGAAT 583
BSNT_00959 335 AA 336
||
RBAM_020230__ 584 AA 585
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