Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00959 and RBAM_020230

See Amino acid alignment / Visit BSNT_00959 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:39
# Commandline: needle
#    -asequence dna-align/BSNT_00959.1.9828.seq
#    -bsequence dna-align/RBAM_020230___ydfR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00959-RBAM_020230___ydfR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00959-RBAM_020230___ydfR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00959
# 2: RBAM_020230___ydfR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 602
# Identity:     228/602 (37.9%)
# Similarity:   228/602 (37.9%)
# Gaps:         283/602 (47.0%)
# Score: 672.0
# 
#
#=======================================

BSNT_00959         0 --------------------------------------------------      0
                                                                       
RBAM_020230__      1 ATGAGATTTGCTTGGGAAGAATTAATTATAATTGCATTCGGAATGATTTT     50

BSNT_00959         0 --------------------------------------------------      0
                                                                       
RBAM_020230__     51 ACTGAGAATTTCAGGGAGAAAATCCATTGCACAAATGACCATTGCACAGA    100

BSNT_00959         0 --------------------------------------------------      0
                                                                       
RBAM_020230__    101 CAATGGTCATGATTTCAATCGGTACGATTATCGTTCACCCCATTTTAGAA    150

BSNT_00959         0 --------------------------------------------------      0
                                                                       
RBAM_020230__    151 ACCAGTTTATTGAAAACATTAATCGCTGCGTCTATCCTTTTTAGCGCTTT    200

BSNT_00959         1 ----------------------------------------------ATGT      4
                                                                   .|.|
RBAM_020230__    201 GATTTTAATGGAGTGGTTTCAAGTAAAAGTAAACTGGATTGAATCTTTTT    250

BSNT_00959         5 TGACCGGAGAAGCAAAAGTTGTTATTGAAAACGGACAGCTTCATATCGAA     54
                     |.||||||.||.|.|||.|.|||||.|||.||||.||.||..||||.|||
RBAM_020230__    251 TAACCGGAAAATCTAAATTCGTTATAGAAGACGGCCAACTCAATATAGAA    300

BSNT_00959        55 AACTTAAAGAAGATGAGACTTACAGTTGATCAGCTTGAAATGCAGCTACG    104
                     ||||||||||||.||||.||.||||..|||||.||.|||||||...||.|
RBAM_020230__    301 AACTTAAAGAAGCTGAGGCTGACAGCAGATCAACTCGAAATGCGTTTAAG    350

BSNT_00959       105 GCTTCACGGCGTTACGGGTAT----ACAAGATGTCAAAATTGCGACATTA    150
                     |||||..|||.||.|...|||    ||||    |.|||..|||.||.|||
RBAM_020230__    351 GCTTCTTGGCATTTCAAATATAAACACAA----TTAAATATGCCACTTTA    396

BSNT_00959       151 GAGGCAAACGGGCAATTAGGAATTGAATTGACTGATGACGCCAAGCCTTT    200
                     ||.||.||.||.||||||||....|||||.|..|||||....||||||||
RBAM_020230__    397 GAAGCTAATGGACAATTAGGCTACGAATTAAAAGATGATTGTAAGCCTTT    446

BSNT_00959       201 AACAGTCAGGGATCTGAAAAAACTCATTCA-CCCCGATTTCATAAATAAG    249
                     |||..|||..|||||.|||||..|.||..| ||...||.||.|||..|||
RBAM_020230__    447 AACCATCAAAGATCTTAAAAATGTGATCGATCCAAAATGTCTTAACAAAG    496

BSNT_00959       250 GACGGACAAGCC-CAGTCTGGCAATCAG-----------AATATTTTTGA    287
                             |||| |||.||  |||..||           |||||.||.||
RBAM_020230__    497 --------AGCCTCAGCCT--CAAAAAGATGATCAAGCCAATATATTCGA    536

BSNT_00959       288 TGAAGTTGGCAAAAAAAATAAAA---AAAACGTCCCTAAAAAGCTGCATT    334
                     .|||.|   |||||||.|..|.|   |..||...||.|||||.||..|.|
RBAM_020230__    537 GGAAAT---CAAAAAACACCAGACTCAGCACAAGCCAAAAAATCTTGAAT    583

BSNT_00959       335 AA    336
                     ||
RBAM_020230__    584 AA    585


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