Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03280 and RBAM_020150

See Amino acid alignment / Visit BSNT_03280 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:26
# Commandline: needle
#    -asequence dna-align/BSNT_03280___ypcP.1.9828.seq
#    -bsequence dna-align/RBAM_020150___ypcP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03280___ypcP-RBAM_020150___ypcP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03280___ypcP-RBAM_020150___ypcP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03280___ypcP
# 2: RBAM_020150___ypcP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 908
# Identity:     697/908 (76.8%)
# Similarity:   697/908 (76.8%)
# Gaps:          37/908 ( 4.1%)
# Score: 2582.5
# 
#
#=======================================

BSNT_03280___      1 ATGAATAATAATAAACTATTGCTGGTTGACGGCATGGCTCTTTTATTCCG     50
                     |||   |||||||||.||.||||.||||||||||||||.|||||.|||||
RBAM_020150__      1 ATG---AATAATAAATTACTGCTCGTTGACGGCATGGCGCTTTTGTTCCG     47

BSNT_03280___     51 GGCCTTTTTTGCCACGGCCGTACATCGCAACTTTATGATAAATGACAGCG    100
                     ..|.|||||.||.||||||||.||||||||.||||||||||||||.|.||
RBAM_020150__     48 CTCGTTTTTCGCGACGGCCGTTCATCGCAATTTTATGATAAATGAAAACG     97

BSNT_03280___    101 GGGTGCCGACGAACGGCGTCAACGGCTTTTTAAAGCATTTGATTACAGCT    150
                     |..|.||.||.||||||||||||||.||||||||||||.|.|||||.||.
RBAM_020150__     98 GAATTCCCACAAACGGCGTCAACGGTTTTTTAAAGCATCTTATTACGGCG    147

BSNT_03280___    151 GTGGAAACATTCCAGCCGACACACGTCGTCTGCTGCTGGGACATGGGGAG    200
                     ||.||.||.||.|||||.|||||.|||||||||||||||||.|||||.||
RBAM_020150__    148 GTTGATACGTTTCAGCCCACACATGTCGTCTGCTGCTGGGATATGGGAAG    197

BSNT_03280___    201 CAAAACGTACCGAAATGACTTGTTCCAAGATTATAAGGCCAACCGCAGCG    250
                     ||||||||||||.|||||.|||||.||||||||||||||||||.|.||.|
RBAM_020150__    198 CAAAACGTACCGCAATGATTTGTTTCAAGATTATAAGGCCAACAGAAGTG    247

BSNT_03280___    251 CGCCGCCTGTGGAGCTGATTCCGCAGTTTGATTTGGCAAAGGAAGCAGCC    300
                     ..|||||..|.||||||||||||||.||||||.|.||.||.||||||| |
RBAM_020150__    248 AACCGCCGCTAGAGCTGATTCCGCAATTTGATCTAGCGAAAGAAGCAG-C    296

BSNT_03280___    301 GC-AGAGCTTGGAATCATGAATATTGGCTTTGCCGGCTATGAAGCGGATG    349
                     || ||||||.||..|..|.||.||.|||.|....||||||||.|||||||
RBAM_020150__    297 GCGAGAGCTCGGTTTTTTAAACATCGGCATAAAAGGCTATGAGGCGGATG    346

BSNT_03280___    350 ACTGTATCGGTACTCTTGCCGATTTAT-TTGCGAATGAAGCGGACATTAC    398
                     |||||||||||||.|||.|.|...||| ||.|| ..||||||||.|||||
RBAM_020150__    347 ACTGTATCGGTACGCTTTCTGCCCTATATTCCG-GGGAAGCGGAAATTAC    395

BSNT_03280___    399 GGTCGTAACAGGGGACAGAGATTTACTTCA---GCTGTTAA-CGGATAAA    444
                     |.|.|||||.||.||.|.||||.|.|||||   ||||  || |  ||.||
RBAM_020150__    396 GATTGTAACGGGTGATAAAGATCTGCTTCAATTGCTG--AATC--ATCAA    441

BSNT_03280___    445 GT--AAGCGTTGCTTTGCTTCAAAAAGGAATCGGAAATTATAAAGTCTAT    492
                     ||  ||  ||.||..||||.|||||.||.|||||.||||||||.||.|||
RBAM_020150__    442 GTTCAA--GTAGCGCTGCTGCAAAAGGGTATCGGCAATTATAAGGTATAT    489

BSNT_03280___    493 ACAAAAGAGACTTTTTA-TGAAGAAACAGGCGTAATGCCGAAGGCTTTGA    541
                     |||.|.|||| |.|||| .||||||||.||.||...|||.||.||..|||
RBAM_020150__    490 ACAGATGAGA-TATTTAGAGAAGAAACGGGAGTTCCGCCAAAAGCGCTGA    538

BSNT_03280___    542 TTGATATTAAAGCGCTTATGGGAGATTCCAGTGATAACTATCCCGGAGTC    591
                     ||||.|||||.|||||.||||||||..|.||.||||||||||||||.||.
RBAM_020150__    539 TTGACATTAAGGCGCTGATGGGAGACACGAGCGATAACTATCCCGGCGTT    588

BSNT_03280___    592 AAAGGGATTGGAGAAAAAACAGCCTACAAACTGATTCGTGAATACGAAAC    641
                     ||||||||.||.||||||||.||.|||||.|||||.|||||||||.|||.
RBAM_020150__    589 AAAGGGATCGGGGAAAAAACGGCGTACAAGCTGATCCGTGAATACCAAAA    638

BSNT_03280___    642 GATTGACCGTTTATTGGAAAATCTTTCTCTTCTT-CCAAAAGGACAGCAG    690
                     .||.|||||.|||||.||||..||..||| |||| ||.||.||.|||||.
RBAM_020150__    639 CATAGACCGGTTATTAGAAAGCCTCGCTC-TCTTGCCGAAGGGCCAGCAA    687

BSNT_03280___    691 GGAAAAATTCAGCAAGGTTTAAGCGATTTGGAGATGTCGAGGAAGCTTGC    740
                     ...||||||||||||.|.||.|..||.||||||.||||.|||.|||||||
RBAM_020150__    688 ACGAAAATTCAGCAAAGCTTGAAAGAATTGGAGCTGTCAAGGCAGCTTGC    737

BSNT_03280___    741 GGAAATTCATTGCTCAGTGCCGCTGGCCTGCACACTGAAAGA--CGCTTT    788
                     .|||||.||||||...||||||.|.|.|||.||.||..||||  ||||| 
RBAM_020150__    738 TGAAATACATTGCGAGGTGCCGTTAGTCTGTACGCTTGAAGAAGCGCTT-    786

BSNT_03280___    789 ATTTACTTTGCAAATGGAGCAGGCGGC-TGACATGCTTCGCCGCCACCAA    837
                      |||.|.|||.|.|||||..||||||| |.| |||||..|.|||||.||.
RBAM_020150__    787 -TTTTCATTGAAGATGGAAGAGGCGGCATTA-ATGCTCAGACGCCATCAG    834

BSNT_03280___    838 ATCAAAGGAATTGAGCGTATGCTTGAAAAGCTGAACGCTAGAGAGATCGT    887
                     ||.|||||||||||..|.|||||.||||||||||||||.|||||||||  
RBAM_020150__    835 ATAAAAGGAATTGAAAGGATGCTCGAAAAGCTGAACGCCAGAGAGATC--    882

BSNT_03280___    888 TTAG----    891
                       ||    
RBAM_020150__    883 --AGCTGA    888


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03280 and RBAM_020150

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
