Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03273 and RBAM_020100

See Amino acid alignment / Visit BSNT_03273 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:25
# Commandline: needle
#    -asequence dna-align/BSNT_03273___ypeQ.1.9828.seq
#    -bsequence dna-align/RBAM_020100___ypeQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03273___ypeQ-RBAM_020100___ypeQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03273___ypeQ-RBAM_020100___ypeQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03273___ypeQ
# 2: RBAM_020100___ypeQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 183
# Identity:     140/183 (76.5%)
# Similarity:   140/183 (76.5%)
# Gaps:           0/183 ( 0.0%)
# Score: 528.0
# 
#
#=======================================

BSNT_03273___      1 TTGGATAAGAAAATGATCTTTAAAGAACTGACAGAATTGCACGATGAATA     50
                     ||||||||.||||..||.|.|||||||.|||||||..|.||.||||||||
RBAM_020100__      1 TTGGATAAAAAAAGCATTTATAAAGAATTGACAGAGCTTCAGGATGAATA     50

BSNT_03273___     51 TTGCAAGGACTGTTTTATTAAGAAGCAGTTTCGCAAAGAATTTGGCAAAA    100
                     ||||||.||||||||..|.||.|||||.||.||||||||.|||||.||||
RBAM_020100__     51 TTGCAAAGACTGTTTCGTAAAAAAGCATTTCCGCAAAGAGTTTGGAAAAA    100

BSNT_03273___    101 CTTATGCGCATTCATTTTGTATCAATAAATGTACGGTTGGTGAAAAGCTG    150
                     |..|.||.|||||.||.||.|||||..||||.|||||.||.||.||||||
RBAM_020100__    101 CGCACGCTCATTCTTTCTGCATCAACCAATGCACGGTGGGGGAGAAGCTG    150

BSNT_03273___    151 AAACAATACGGAGATGTCTTAACCAATCACTAA    183
                     |||...|||||..|.||..|.||.|||||.|||
RBAM_020100__    151 AAAGCCTACGGCAAGGTGCTGACAAATCAATAA    183


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