Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03252 and RBAM_019960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence dna-align/BSNT_03252___dfrA.1.9828.seq
# -bsequence dna-align/RBAM_019960___dfrA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03252___dfrA-RBAM_019960___dfrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03252___dfrA-RBAM_019960___dfrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03252___dfrA
# 2: RBAM_019960___dfrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 535
# Identity: 358/535 (66.9%)
# Similarity: 358/535 (66.9%)
# Gaps: 77/535 (14.4%)
# Score: 1194.5
#
#
#=======================================
BSNT_03252___ 1 ATGATTTCATTCATTTTTGCGATGGATGCCAACAGGCTTATCGGCAAAGA 50
||||||||.||.||||||||||||||||..|||.||||.|||||.|||||
RBAM_019960__ 1 ATGATTTCGTTTATTTTTGCGATGGATGAAAACCGGCTGATCGGAAAAGA 50
BSNT_03252___ 51 CAATGATTTGCCGTGGCATTTGCCCAATGATCTTGCATACTTTAAGAAAG 100
.||.|||.||||.|||||..|.|||.|||||||.|||||.||.||.||||
RBAM_019960__ 51 TAACGATCTGCCTTGGCACCTTCCCGATGATCTCGCATATTTCAAAAAAG 100
BSNT_03252___ 101 TAACATCGGGCCATTCAATCATTATGGGCCGAAAAACATTTGAATCGATC 150
|.||..|.|||||..|.||..|.|||||.||.|||||.||||||||.|||
RBAM_019960__ 101 TGACGACAGGCCACACCATTGTAATGGGGCGGAAAACGTTTGAATCAATC 150
BSNT_03252___ 151 GGACGTCCGCTTCCAAATCGGAAAAATATTGTCGTTACCTCA-GCGCCG- 198
|||||.||||||||.||.|||...||.||.||.||.|||||| |.|.||
RBAM_019960__ 151 GGACGCCCGCTTCCGAACCGGCGTAACATCGTTGTAACCTCACGGGACGA 200
BSNT_03252___ 199 -TCTTCAGAATTTCCGGGATG---CACGGTTG--TCGGTTCATTAAAGGA 242
||||| |||.|||||.|| .||.|.|| ||||.| .||||
RBAM_019960__ 201 ATCTTC---ATTCCCGGGCTGTATTACCGCTGACTCGGCT-----GAGGA 242
BSNT_03252___ 243 TGTACTGGACATTTGTTCAGG-----CCC------TGAAGAATGCTTTGT 281
.| ||.|||.| ||| |||||||||||||||
RBAM_019960__ 243 AG-----------TGCTCAAGCTGATCCCGGCGGATGAAGAATGCTTTGT 281
BSNT_03252___ 282 GATCGGAGGGGCTCAGCTCTATACGGACCTTTTCCCTTATGCGGACAGAC 331
.|||||.||.||.|||||.||.|..|..||.||.|||||.||||||||||
RBAM_019960__ 282 AATCGGCGGCGCCCAGCTGTACAGTGCGCTCTTTCCTTACGCGGACAGAC 331
BSNT_03252___ 332 TGTATATGACGAAAATTCATCACGAGTTTGAGGGTGACCGTCACTTCCCT 381
|.||.|||||.||||||||.||.|..|||||.||.||||||...||.||.
RBAM_019960__ 332 TCTACATGACAAAAATTCACCATGTCTTTGAAGGAGACCGTTTTTTTCCG 381
BSNT_03252___ 382 AAATTTGATGAATC-CAATTGGAAGCTGGTT----TCTTCTG--AGCAGG 424
.|||||.|||||.| .|||.|||| || || |.| |.||||
RBAM_019960__ 382 GAATTTAATGAAGCTGAATGGGAA-----TTGACATC--CCGCAAACAGG 424
BSNT_03252___ 425 GGATCAAAGACGAAAAAAACCCGTATGATTACGAATTTCTAATGTAT--G 472
|..|.|||||.|||||||||||.||.|||||.||.|..|| ||||| |
RBAM_019960__ 425 GAGTAAAAGATGAAAAAAACCCTTACGATTATGAGTACCT--TGTATACG 472
BSNT_03252___ 473 AAAAAAAGAATTCTTCTAAAGCGGGAGGATTTTAA 507
|.|||||||||| ||
RBAM_019960__ 473 AGAAAAAGAATT------------GA--------- 486
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