Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03251 and RBAM_019950
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence dna-align/BSNT_03251___ypkP.1.9828.seq
# -bsequence dna-align/RBAM_019950___ypkP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03251___ypkP-RBAM_019950___ypkP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03251___ypkP-RBAM_019950___ypkP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03251___ypkP
# 2: RBAM_019950___ypkP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 661
# Identity: 416/661 (62.9%)
# Similarity: 416/661 (62.9%)
# Gaps: 77/661 (11.6%)
# Score: 1160.5
#
#
#=======================================
BSNT_03251___ 1 TTGGTTCGCTACAGCCTTCTGGTGGTTTATATTGTGTATATGCTGTTAAA 50
|||.||||.|||.||...||.|||.|.||..||||.|.||||.|..|.||
RBAM_019950__ 1 TTGATTCGTTACGGCTGCCTTGTGATGTACGTTGTATTTATGTTCATGAA 50
BSNT_03251___ 51 AAATAT----GAAACAATTAT-TTAATCAAACAATGCTCGATCCCCGTCT 95
|||||| ||| ||| |.|||||||.|..|||.||.||.||.||
RBAM_019950__ 51 AAATATTCAGGAA-----TATATCAATCAAAAAGAGCTTGACCCGCGGCT 95
BSNT_03251___ 96 ATCATACAAAAAACAGATGACTCTTGTGTACGAACAGCCAAAGGCGTTTT 145
.||.|...||||||||||||..||.|||||.||.|.|||.||.||.|||.
RBAM_019950__ 96 TTCTTTTCAAAAACAGATGAGGCTGGTGTATGAGCGGCCGAAAGCCTTTA 145
BSNT_03251___ 146 TGGAAGGCTGTATCGGCATATCCGGTTCAGTTGTGACG--ATCCATCAGC 193
||..||||||.||.|.|.|.||.||.||.||..| || ||.|||||..
RBAM_019950__ 146 TGAGAGGCTGCATTGACGTGTCGGGATCGGTAAT--CGGCATTCATCATG 193
BSNT_03251___ 194 CAGAGCCAATACCACACGGTCCTGTTTTGTATGTGCATCCCCGTTTGCAT 243
...||||.|||||..||||.||.||.|||||||||||||||.|.||||..
RBAM_019950__ 194 ATCAGCCGATACCGGACGGCCCCGTATTGTATGTGCATCCCAGATTGCGC 243
BSNT_03251___ 244 TTGGCTGAACTGGCCT--TAATTGCTGGATATATTGAGGAACCGGCCGGC 291
..||||||.|| .|| |..||||.|||.||.||||.||.|||||.||.
RBAM_019950__ 244 CCGGCTGATCT--TCTGCTGCTTGCGGGACATCTTGAAGAGCCGGCTGGT 291
BSNT_03251___ 292 TTTATCGCCAACCCAAAAGTGTTCCGCTTGCCTTTTATCGGGCAATGGCT 341
||||||||...|...||||..|||||..||||.|||.||||..|.|||||
RBAM_019950__ 292 TTTATCGCTGGCGAGAAAGCTTTCCGGATGCCGTTTCTCGGAAATTGGCT 341
BSNT_03251___ 342 GGATCGGATGGATGTGATTTCAGACG-----------------GTGATTC 374
|...|.|||||.|||.||||..|||| |||.|||
RBAM_019950__ 342 GCGGCTGATGGGTGTCATTTGTGACGGAGACAGCCGGGATGCCGTGTTTC 391
BSNT_03251___ 375 AGAAAAGGTATATGAAGAT--GTGACAAAACAGCTGGAAAAGGGACAAAG 422
|| .|||.| |||| | || |||.||||.||.|||||
RBAM_019950__ 392 AG--GAGGCA---GAAG-TCCGT----------CTGCAAAAAGGGCAAAG 425
BSNT_03251___ 423 CCTGATTCTTTCACTAGATGGTTCTATTGATCCTGTAGAACTTGCGGCC- 471
|||||||||.||...|||.||....||..||||.|..||||| ||||
RBAM_019950__ 426 CCTGATTCTGTCCGAAGACGGAAAAATCAATCCGGAGGAACT---GGCCC 472
BSNT_03251___ 472 --CGCTATC-ATCTTCCGTTGGTGATGGTGGAAACGAAAGGAACAGATAA 518
|| |.|| ||||.|||.|.|||...||....||....||||||||...
RBAM_019950__ 473 TTCG-TTTCGATCTCCCGATTGTGCCTGTCAGCACTTCGGGAACAGACCG 521
BSNT_03251___ 519 CATGCAAAAGGGCTCGTTTTTTAAACGCTTAAAACCGGCAGACATTGAAT 568
..|||....||||...||..|.|||||..|.||||||||.|||||||||
RBAM_019950__ 522 GCTGCTGCGGGGCAGATTACTGAAACGGCTGAAACCGGCTGACATTGAA- 570
BSNT_03251___ 569 TGTCCTTTTCA---AAA----GCTTATATA-CCTGCCAATGAAAAACAAT 610
||.|| ||| |||||| || ||.|||..|.|.||||...
RBAM_019950__ 571 ------TTACATATAAAGCCCGCTTAT-TATCCGGCCGGTCAGAAACGGC 613
BSNT_03251___ 611 TACGTGCATAA 621
|.|||||||||
RBAM_019950__ 614 TCCGTGCATAA 624
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