Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03246 and RBAM_019920
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_03246___ilvA.1.9828.seq
# -bsequence dna-align/RBAM_019920___ilvA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03246___ilvA-RBAM_019920___ilvA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03246___ilvA-RBAM_019920___ilvA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03246___ilvA
# 2: RBAM_019920___ilvA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1278
# Identity: 1017/1278 (79.6%)
# Similarity: 1017/1278 (79.6%)
# Gaps: 18/1278 ( 1.4%)
# Score: 4037.5
#
#
#=======================================
BSNT_03246___ 1 ATGAAACCGTTGCTTAAAGAAAACTCTCTCATCCAAGTGAAAGACATTTT 50
|||||||||||||||||||||.|||||||||||||.||.|||||||||||
RBAM_019920__ 1 ATGAAACCGTTGCTTAAAGAAGACTCTCTCATCCAGGTAAAAGACATTTT 50
BSNT_03246___ 51 GAAGGCTCACCAAAACGTAAAGGACGTTGTCATTCACACACCTTTGCAGA 100
.||.||.||||||||.||||||||||||||.||.||.||.||||||||||
RBAM_019920__ 51 AAAAGCGCACCAAAATGTAAAGGACGTTGTGATACATACGCCTTTGCAGA 100
BSNT_03246___ 101 GGAATGACAGACTTTCTGAGAGATATGAATGCAATATCTATTTAAAACGC 150
||||||||||||||||||||||.||||..||||||||||||||.|||.|.
RBAM_019920__ 101 GGAATGACAGACTTTCTGAGAGGTATGGCTGCAATATCTATTTGAAAAGA 150
BSNT_03246___ 151 GAAGACTTGCAAGTTGTCAGATCTTTTAAGCTCAGAGGGGCTTATCATAA 200
||||||.||||.||.||||||||.|||||||||||||||||||||.||||
RBAM_019920__ 151 GAAGACCTGCAGGTGGTCAGATCATTTAAGCTCAGAGGGGCTTATAATAA 200
BSNT_03246___ 201 AATGAAACAGCTTTCCAGCGAGCAGACAGAGAACGGAGTTGTGTGTGCAA 250
|||||..|||||.||.|..||||||||.||.||||||.||||.||.||||
RBAM_019920__ 201 AATGAGGCAGCTCTCAAAAGAGCAGACTGAAAACGGAATTGTATGCGCAA 250
BSNT_03246___ 251 GTGCCGGAAACCACGCTCAAGGTGTGGCATTTTCGTGTAAACATCTTGGC 300
||||.||||||||.||.||.||.||.||.|||||.||.|||||.||.|||
RBAM_019920__ 251 GTGCGGGAAACCATGCGCAGGGGGTTGCGTTTTCATGCAAACACCTCGGC 300
BSNT_03246___ 301 ATTCACGGAAAAATTTTTATGCCGTCTACTACACCGAGACAAAAAGTATC 350
||||||||.||.||||||||||||||.||.|||||||||||.||||||||
RBAM_019920__ 301 ATTCACGGCAAGATTTTTATGCCGTCAACCACACCGAGACAGAAAGTATC 350
BSNT_03246___ 351 TCAAGTTGAACTATTCGGAAAAGGATTTATCGACATTATTTTGACAGGCG 400
.|||||.|||||.||||||||||.||||.|.||.||.||.|||||.||.|
RBAM_019920__ 351 CCAAGTGGAACTGTTCGGAAAAGAATTTGTTGAAATCATATTGACGGGTG 400
BSNT_03246___ 401 ATACGTTTGACGACGCGTATAAAAGCGCTGCTGAATGCTGTGAGGCGGAA 450
|.||.||.||.||.||||||||.||..||||.|||||||||||....|||
RBAM_019920__ 401 ACACTTTCGATGATGCGTATAAGAGTTCTGCGGAATGCTGTGAAAAAGAA 450
BSNT_03246___ 451 TCTCGGACGTTTATCCATCCGTTCGATGATCCGGATGTGATGGCCGGACA 500
...||.||||||||.||||||||.||.|||||.|||||.|||||||||||
RBAM_019920__ 451 AACCGCACGTTTATTCATCCGTTTGACGATCCCGATGTCATGGCCGGACA 500
BSNT_03246___ 501 GGGAAC-GCTCGCAGTCGAGATTTTAAACGACATTGATACAGAACCGCAT 549
|||||| ||| ||..||||.||||||||.||||||||....|||||||||
RBAM_019920__ 501 GGGAACGGCT-GCCATCGAAATTTTAAATGACATTGACGTTGAACCGCAT 549
BSNT_03246___ 550 TTTCTTTTTGCAAGTGTCGGTGGCGGCGGCCTTCTCTCTGGGGTAGGTAC 599
||||||||||||||.||.||.||.||.||.||.||.||.|||.|.||.||
RBAM_019920__ 550 TTTCTTTTTGCAAGCGTAGGGGGAGGTGGACTCCTGTCCGGGCTCGGCAC 599
BSNT_03246___ 600 ATATTTGAAAAACGTGTCTCCTGATACAAAGGTAATTGCTGTTGAGCCGG 649
.||..||||||||.|.||.||.||||||||..|.||.||.||.||||||.
RBAM_019920__ 600 GTACATGAAAAACATCTCGCCGGATACAAAAATCATAGCGGTAGAGCCGA 649
BSNT_03246___ 650 CGGGAGCGGCATCCTACTTTGAATCAAACAAAGCTGGGCATGTCGTCACA 699
.|||.||.||.|||||.||||||||.||.|||||.||.||.||.||...|
RBAM_019920__ 650 AGGGCGCAGCCTCCTATTTTGAATCGAAAAAAGCCGGACAAGTGGTTGAA 699
BSNT_03246___ 700 CTTGATAAAATTGATAAGTTTGTAGATGGTGCGGCTGTTAAAAAAATTGG 749
|||||.|||||.|||||.|||||.|||||.|||||.||.||||||||.||
RBAM_019920__ 700 CTTGAGAAAATCGATAAATTTGTCGATGGGGCGGCCGTAAAAAAAATCGG 749
BSNT_03246___ 750 CGAAGAAACCTTCCGGACGCTGGAAACTGTCGTTGATGACATTCTCCTTG 799
||..||||||||.|..|||||.|||||.|||||.||||||.||.|.||||
RBAM_019920__ 750 CGCGGAAACCTTTCAAACGCTCGAAACCGTCGTCGATGACGTTGTGCTTG 799
BSNT_03246___ 800 TGCCTGAAGGAAAAGTATGTA-CATCCATTCTTGAATTATATAACGAATG 848
|.||.|||||||||||.||.| || |.|||||.|||||||||||..||||
RBAM_019920__ 800 TCCCGGAAGGAAAAGTGTGCAGCA-CGATTCTCGAATTATATAATCAATG 848
BSNT_03246___ 849 TGCGGTTGTTGCTGAACCGGCTGGAGCTCTTTCTGTCGCAGCGCTTGATT 898
.||..|.||.||.||.|||||.||.||..|.||.||..||||.|||||||
RBAM_019920__ 849 CGCCATCGTAGCGGAGCCGGCGGGGGCATTGTCCGTGTCAGCACTTGATT 898
BSNT_03246___ 899 TGTACAAGGATGAAATTAAAGGGAAAAACGTGGTGTGTGTGGTAAGCGGG 948
||||.|||||.||.|||||||||||||||||..|.||..||||.|||||.
RBAM_019920__ 899 TGTATAAGGAAGAGATTAAAGGGAAAAACGTCATCTGCATGGTCAGCGGA 948
BSNT_03246___ 949 GGCAATAACGATATCGGAAGAATGCAGGAAATGAAGGAGCGTTCCTTGAT 998
||.||||||||.|||||.|||||||||||.|||||||||||.|||.||||
RBAM_019920__ 949 GGGAATAACGACATCGGCAGAATGCAGGAGATGAAGGAGCGCTCCATGAT 998
BSNT_03246___ 999 TTTTGAAGGTCTTCAGCATTATTTTATCGTCAACTTTCCGCAAAGAGCGG 1048
||.|||.||.||.|||||||||||||||||.||.||.||||||||.||||
RBAM_019920__ 999 TTATGAGGGGCTGCAGCATTATTTTATCGTTAATTTCCCGCAAAGGGCGG 1048
BSNT_03246___ 1049 GGGCGCTCCGCGAATTTCTTGACGAAGTCCTCGGACCGAATGATGACATT 1098
|.|||||.|||||||..||.||.|||||.||.||.||..||||||||||.
RBAM_019920__ 1049 GAGCGCTTCGCGAATACCTAGATGAAGTGCTTGGGCCTGATGATGACATC 1098
BSNT_03246___ 1099 ACAAGGTTTGAATATACGAAGAAAAATAATAAAAGCAATGGACCTGCTCT 1148
||..||||||||||.|||||.||||||||.|||||||..||.||.||..|
RBAM_019920__ 1099 ACCCGGTTTGAATACACGAAAAAAAATAACAAAAGCAGCGGCCCCGCATT 1148
BSNT_03246___ 1149 TGTCGGCATCGAGCT---GCA----GAACAAAGCCGATTATGGGCCGCTG 1191
.||||||||.||||| ||| ||| |||||.||..||||.
RBAM_019920__ 1149 GGTCGGCATTGAGCTTAAGCATCGGGAA-------GATTACGGCGCGCTC 1191
BSNT_03246___ 1192 ATTGAACGGATGAACAAAAAACCGTTTCATTATGTAGAGGTGAACAAGGA 1241
||||..||||||||..|||||...||||||||.|||||||||||.||.||
RBAM_019920__ 1192 ATTGCCCGGATGAATCAAAAAGGATTTCATTACGTAGAGGTGAATAAAGA 1241
BSNT_03246___ 1242 TGAGGACTTGTTCCATTTGCTAATCTAA 1269
|.||||..|||||||..||.||||||.|
RBAM_019920__ 1242 TCAGGATCTGTTCCACCTGTTAATCTGA 1269
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