Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03243 and RBAM_019900
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_03243___ypmQ.1.9828.seq
# -bsequence dna-align/RBAM_019900___ypmQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03243___ypmQ-RBAM_019900___ypmQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03243___ypmQ-RBAM_019900___ypmQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03243___ypmQ
# 2: RBAM_019900___ypmQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 670
# Identity: 437/670 (65.2%)
# Similarity: 437/670 (65.2%)
# Gaps: 95/670 (14.2%)
# Score: 1473.5
#
#
#=======================================
BSNT_03243___ 1 ---ATGAAGG-----------TTAT-CAAGGGGTTAACGG---------- 25
|||||.| |||| ||.||||..||.||
RBAM_019900__ 1 ATGATGAATGCTGTAAGCGTTTTATCCATGGGGGGAATGGAAATGAAAAA 50
BSNT_03243___ 26 ---------CTGGGCTG--ATTTTTCTGTTT-------TTGTGTGCATGC 57
||..|||| .|.||| ||||| |||||.||.|||
RBAM_019900__ 51 AATGAAAATCTTCGCTGCCGTCTTT-TGTTTGCTGCTCTTGTGCGCCTGC 99
BSNT_03243___ 58 -GGAGGACAGCAGATTAAAAATCCGCTCAATTACGAGGTGGAGCCTTTTA 106
||.|||.|.| |||.|||.|.|||||.||.||..||.|.||.||.|||.
RBAM_019900__ 100 GGGGGGAAAAC-GATAAAAGACCCGCTGAACTATCAGATTGAACCGTTTT 148
BSNT_03243___ 107 CATTTCAAAACCAAGACGGCAAGAAC-GTTTCTTTAGAGAGTTTAAAAGG 155
|||..||.|||||||||||.|| ||| ||.||..|..|.||..|.||.||
RBAM_019900__ 149 CATACCAGAACCAAGACGGGAA-AACAGTGTCACTGAATAGCCTGAAGGG 197
BSNT_03243___ 156 AGAAGTATGGCTGGCGGATTTTATTTTTACCAATTGTGAAACTATATGTC 205
..|.||.|||.|.||.||.|||||.|||||.||||||.|.||..|.||||
RBAM_019900__ 198 GCATGTCTGGATTGCCGACTTTATGTTTACAAATTGTAATACGGTCTGTC 247
BSNT_03243___ 206 CGCCAATGACCGCTCATATGACCGATCTGCAAAAAAAACTGAAAGCCGAA 255
||||.|||||.||.||.||||||||.|||||||||||||||||.||.||.
RBAM_019900__ 248 CGCCGATGACGGCCCACATGACCGAACTGCAAAAAAAACTGAAGGCTGAG 297
BSNT_03243___ 256 AATATAGATGTCCGCATCATATCATTTAGTGTTGATCCAGAAAACGATAA 305
|||.|.||.||.||.||..|.||.||.|||||.|||||.|||||.||||.
RBAM_019900__ 298 AATCTGGACGTGCGGATTGTGTCGTTCAGTGTAGATCCTGAAAAGGATAC 347
BSNT_03243___ 306 GCCGAAACAGCTGAAGAAATTTGCCGCAAATTATCCATTATCTTTTGATA 355
|||||||||||||||...||||||.||.||.||.||..|.||..||...|
RBAM_019900__ 348 GCCGAAACAGCTGAAAGCATTTGCTGCCAAATACCCGCTCTCACTTCGCA 397
BSNT_03243___ 356 ACTGGGATTTTCTCACGGGATACAGCCAGAGTGAGATTGAGGAGTTCGCA 405
|||||||||||||.||.||.||||||||.|..||.|||||.||.||.||.
RBAM_019900__ 398 ACTGGGATTTTCTGACCGGTTACAGCCAAAAGGACATTGAAGATTTTGCG 447
BSNT_03243___ 406 CTTAAGAGCTTTAAAGCGATCGTAAAGAAGCCGGAGGGAGAGGACCAAGT 455
||.||.|||||||||||.|||||.||.||||||||||||||||||||.||
RBAM_019900__ 448 CTGAACAGCTTTAAAGCAATCGTCAAAAAGCCGGAGGGAGAGGACCAGGT 497
BSNT_03243___ 456 GATTCATCAATCTTCTTTTTGGTTAGTAGGCCCGAACGGCAAGGTGCTGA 505
.||.||||||.|.|||||||..|||||.||.||..|.|||||||||||.|
RBAM_019900__ 498 CATACATCAAACCTCTTTTTATTTAGTCGGACCTGATGGCAAGGTGCTTA 547
BSNT_03243___ 506 AAGATTATAATGGAGTG--GAAAATACACCGTACGATGAAATTATCGCCG 553
||||||||.|.||.||| ||||.| .|||||.|||||.||..||.|.|
RBAM_019900__ 548 AAGATTATGACGGCGTGCAGAAAGT--TCCGTATGATGACATCCTCTCAG 595
BSNT_03243___ 554 ATGTAAAATCAGC--AGGCGCACTCAAGGAAGTTAGAAGACTAGGCATTT 601
||||.|.|.|.|| |||.| ||||||.||
RBAM_019900__ 596 ATGTCAGAGCGGCTGAGGAG--CTCAAGTAA------------------- 624
BSNT_03243___ 602 GCAAATCTTCTAAAACATGA 621
RBAM_019900__ 624 -------------------- 624
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