Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03231 and RBAM_019640
See
Amino acid alignment /
Visit
BSNT_03231 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:20
# Commandline: needle
# -asequence dna-align/BSNT_03231___phy.1.9828.seq
# -bsequence dna-align/RBAM_019640___phy.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03231___phy-RBAM_019640___phy.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03231___phy-RBAM_019640___phy.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03231___phy
# 2: RBAM_019640___phy
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1218
# Identity: 813/1218 (66.7%)
# Similarity: 813/1218 (66.7%)
# Gaps: 135/1218 (11.1%)
# Score: 2658.0
#
#
#=======================================
BSNT_03231___ 1 ATGAAGGTTTCAAAAACAATGCTGCTAAGCACTGCCGCGGGTTTATTGCT 50
|||||...||||||||||.|..||.|||.|.|.||.||.||.||..||||
RBAM_019640__ 1 ATGAATCATTCAAAAACACTTTTGTTAACCGCGGCAGCCGGATTGATGCT 50
BSNT_03231___ 51 TAGCCTGACAGCAACCTCGGTGTCGGCT---------------CATTATG 85
.| |.|| ||||| |||.| |||.|..
RBAM_019640__ 51 CA-CATG----------CGGTG-CGGTTTCTTCCCAGGCCAAGCATAAGC 88
BSNT_03231___ 86 TGAATGAGGAACATCATTTCAAAGTGACTGCACACACGGAGACAGATCCG 135
||..|||.....|||||||.|..||||.|||.....||||.||.||.|||
RBAM_019640__ 89 TGTCTGATCCTTATCATTTTACCGTGAATGCGGCGGCGGAAACGGAACCG 138
BSNT_03231___ 136 GTCG---CATCTGGCGATGACGCAGCAGATGACCCGGCCATTTGGGTTCA 182
||.| ||.|.|| |||.|||||.|||||.||.||.||||||.|
RBAM_019640__ 139 GTTGATACAGCAGG---TGATGCAGCTGATGATCCTGCGATTTGGCT--- 182
BSNT_03231___ 183 TGAAAAACACCCGGAA-------AAAAGCAAGTTGATTACAACAAATAAG 225
..||.||..||| ||.|||||.|||||.|||||.|||||.
RBAM_019640__ 183 ----GGACCCCAAGAATCCTCTGAACAGCAAATTGATCACAACCAATAAA 228
BSNT_03231___ 226 AAGTCAGGGCTCGTCGTGTATGATTTAGACGGAAAACAGCTTCATTCTTA 275
||.|||||..|.||||||||.....||||.|||||...|||||||||.||
RBAM_019640__ 229 AAATCAGGCTTAGTCGTGTACAGCCTAGAGGGAAAGATGCTTCATTCCTA 278
BSNT_03231___ 276 TGAGTTTGGCAAGCTCAATAATGTCGATCTGCGCTATGATTTTCCATTGA 325
|......||.|||||.||.|||||.|||.|.||||||||||||||.||||
RBAM_019640__ 279 TCCTACCGGGAAGCTGAACAATGTTGATATCCGCTATGATTTTCCGTTGA 328
BSNT_03231___ 326 ACGGCGAAAAAATTGATATTGCTGCCGCATCCAATCGGTCCGAAGGAAAA 375
||||..|||||.|.||||||||.||.||||||||||||||.||||||||.
RBAM_019640__ 329 ACGGAAAAAAAGTCGATATTGCGGCGGCATCCAATCGGTCTGAAGGAAAG 378
BSNT_03231___ 376 AATACAATTGAAGTATATGCAATAGACGGGGATAAAGGAAAATTGAAAAG 425
|||||.|||||..|.||.||.||.||||||.|.||.||.|.|||..||||
RBAM_019640__ 379 AATACCATTGAGATTTACGCCATTGACGGGAAAAACGGCACATTACAAAG 428
BSNT_03231___ 426 CATTACTGATCCGA-AACATCCTATTTC--CACCAATATTTCTGAGGTTT 472
|||||| ||.||.| |.|..||.|||.| ||.|| |||..|||.||.|
RBAM_019640__ 429 CATTAC-GAACCCAGACCGCCCGATTGCGTCAGCA--ATTGATGAAGTAT 475
BSNT_03231___ 473 ATGGATTCAGCTTGTATCACAGCCAGAAAACAGGAGCATTTTACGCATTA 522
|.||.|||||||||||.|||||.||.|||||||||..||.||||||..|.
RBAM_019640__ 476 ACGGTTTCAGCTTGTACCACAGTCAAAAAACAGGAAAATATTACGCGATG 525
BSNT_03231___ 523 GTGACAGGCAAACAAGGGGAATTTGAGCAGTATGAAATTGTTGATGGTGG 572
||||||||.|||.||||.|||.||||.||.||.|||.|...||.||.|..
RBAM_019640__ 526 GTGACAGGGAAAGAAGGCGAACTTGAACAATACGAATTAAATGCTGATAA 575
BSNT_03231___ 573 AAAGGGTTATGTAACAGGGAAAA----AAGTGCGTGAATTTAAGTTGAAT 618
|||.||.||..||.|.||.|||| |||.||| |||||..|||||
RBAM_019640__ 576 AAATGGATACATATCCGGCAAAAAGGTAAGGGCG----TTTAAAATGAAT 621
BSNT_03231___ 619 TCTCAGACCGAAGGCCTTGTTGCGGATGATGAGTACGGAAACCTATACAT 668
||||||||.|||||..|.|..||.||.|||||.|||||.|..||.||.||
RBAM_019640__ 622 TCTCAGACAGAAGGGATGGCAGCAGACGATGAATACGGCAGTCTTTATAT 671
BSNT_03231___ 669 AGCAGAGGAAGATGAGGCCATCTGGAAATTTAACGCTGAGCCCGGCGGAG 718
.|||||.||||||||||||||||||||.||.|.|||||||||.|.|||.|
RBAM_019640__ 672 CGCAGAAGAAGATGAGGCCATCTGGAAGTTCAGCGCTGAGCCGGACGGCG 721
BSNT_03231___ 719 GATCA--AAGGGGCAGGTTGTTGACCGTG-CGACAGGAGATCATTTGACA 765
| || ||.||...||||.|.||.|||| ||||.|.|| .|||||.||.
RBAM_019640__ 722 G--CAGTAACGGAACGGTTATCGATCGTGCCGACGGCAG-GCATTTAACC 768
BSNT_03231___ 766 GCTGATATTGAAGGACTGACAATCTATTATGCACCAAATGGCAAAGGATA 815
.|||||||||||||||||||.||.||.||.||..|..|.||.|||||.||
RBAM_019640__ 769 CCTGATATTGAAGGACTGACGATTTACTACGCTGCTGACGGGAAAGGTTA 818
BSNT_03231___ 816 TCTCATGGCTTCAAGTCAAGGAAATAACAGCTATGCAATGTATGAACGGC 865
|.|..|.||.|||||.||.||.||.|.||||||.||.||.||||||.|.|
RBAM_019640__ 819 TTTGCTTGCATCAAGCCAGGGTAACAGCAGCTACGCGATTTATGAAAGAC 868
BSNT_03231___ 866 AGGGGGA----AAATCGCTATGTAGCCAACTTTGAGATTACAGA-TGGCG 910
||||..| ||| |||||.||..|||||.||||.||||| .|||.
RBAM_019640__ 869 AGGGACAGAACAAA----TATGTTGCGGACTTTCAGATAACAGACGGGCC 914
BSNT_03231___ 911 AGAAGATAGACGGTACTAGTGACACGGATGGTATTGATGTTCTCGGTTTC 960
.| |||.||||||.||.||.||.||.||.||.|||||.|||||.||||||
RBAM_019640__ 915 TG-AGACAGACGGCACAAGCGATACAGACGGAATTGACGTTCTGGGTTTC 963
BSNT_03231___ 961 GGACTTGGCCCAAAATATCCGTACGGGATTTTTGTGGCGCAGGATGGCGA 1010
||.||.||.||..|||||||||.|||..|||||||.||.|||||.||.||
RBAM_019640__ 964 GGGCTGGGACCTGAATATCCGTTCGGCCTTTTTGTCGCACAGGACGGAGA 1013
BSNT_03231___ 1011 AAATATCGATAACGGACAAGCCGTCAATCAAAATTTCAAAATTGTATCGT 1060
||||||.|||.||||.|||...|.||||||||||||.|||||.||..|.|
RBAM_019640__ 1014 AAATATAGATCACGGCCAAAAGGCCAATCAAAATTTTAAAATGGTGCCTT 1063
BSNT_03231___ 1061 GGGAACAAATTGCACAGCATCTCGGCGAAATGCCTGATC----TTC---- 1102
||||| ||.|||.|.|..||| ||| |||
RBAM_019640__ 1064 GGGAA----------AGAATCGCTGATAAA------ATCGGCTTTCACCC 1097
BSNT_03231___ 1103 --------ATAAACAGGTGAACCCGAGGAAGCTGAAAGACCGTTCTGACG 1144
||||||||||..|||||||.||.|||| |||||
RBAM_019640__ 1098 GCAGGTCAATAAACAGGTTGACCCGAGAAAACTGA---------CTGAC- 1137
BSNT_03231___ 1145 GCTAG------------- 1149
||
RBAM_019640__ 1138 ---AGAAGCGGAAAATAA 1152
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.