Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03222 and RBAM_019570
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:19
# Commandline: needle
# -asequence dna-align/BSNT_03222___yodT.1.9828.seq
# -bsequence dna-align/RBAM_019570___yodT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03222___yodT-RBAM_019570___yodT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03222___yodT-RBAM_019570___yodT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03222___yodT
# 2: RBAM_019570___yodT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1392
# Identity: 954/1392 (68.5%)
# Similarity: 954/1392 (68.5%)
# Gaps: 117/1392 ( 8.4%)
# Score: 3085.5
#
#
#=======================================
BSNT_03222___ 1 ATGAGCAGTTATTTGATTAAGCCAGAGCTTAGCTCGGCCTATCCGGTTGT 50
|||.|.||.|||||.||.||.||.||||||..|..|...||||||...||
RBAM_019570__ 1 ATGGGGAGCTATTTAATCAAACCGGAGCTTGACGGGAATTATCCGTCAGT 50
BSNT_03222___ 51 CAGTTATGCGAAGGGTTCATATGTTTATGATCAGACCGGAAAAAAATATC 100
||||.|||..|||||.||||||||.|||||||||...||.||.||.||||
RBAM_019570__ 51 CAGTCATGGAAAGGGATCATATGTGTATGATCAGGAGGGGAACAAGTATC 100
BSNT_03222___ 101 TCGACGGCTCGTCAGGTGCGGTGACATGTAATATCGGC-----CACGGAG 145
|.|||||..|.||.||.|||||.||.||.||||||||| |||||||
RBAM_019570__ 101 TTGACGGAGCATCGGGGGCGGTCACTTGCAATATCGGCCACGGCACGGAG 150
BSNT_03222___ 146 TTCGTGATGTGACTGAGAAGC--TGAAAGAACAGCTTGA-TCAGGTGTCT 192
|||.|.| .|.|||| |.|||||.|||||||| || .||.||.
RBAM_019570__ 151 -----GATATTA--TACAAGCTTTAAAAGAGCAGCTTGACTC-CGTTTCG 192
BSNT_03222___ 193 TTTGCTTACCGCTCACAGTTTACGAGTGAGCCCGCCGAGCAATTAGCCGC 242
||||..||.|||||.||.||.||.|||...||.||.||..||.| .||
RBAM_019570__ 193 TTTGTGTATCGCTCGCAATTCACCAGTACTCCGGCAGAAGAACT---GGC 239
BSNT_03222___ 243 TCTCT---TGGCACAGGAGCTGCCCGGAGATGTGAATTGGTCTTTTTTTG 289
|.|.| ||||..|..|.|||||.||.|...||||||||||.|||||||
RBAM_019570__ 240 TTTATTTCTGGCCGATCATCTGCCGGGCGGGCTGAATTGGTCATTTTTTG 289
BSNT_03222___ 290 TCAACAGCGGGTCAGAAGCGATAGAAACAGCTATGAAAATCGCCATTCAG 339
|.||||||||.|||||.||..|.||||||||.||||||||.|||.||||.
RBAM_019570__ 290 TAAACAGCGGCTCAGAGGCAGTCGAAACAGCGATGAAAATAGCCGTTCAA 339
BSNT_03222___ 340 TATTGGCAGGAAAAAAAGCAA-ACACAAAAATCCATCTTTTTGTCTCGAT 388
|||||||||||||||..|||| || |||||||||.||||..|.||..|||
RBAM_019570__ 340 TATTGGCAGGAAAAAGGGCAATAC-CAAAAATCCGTCTTCCTATCAAGAT 388
BSNT_03222___ 389 GGAGCAGTTACCACGGAATAACTTTGGGAGCGCTTTCATTGTCTGGTTTT 438
||.|||||||||||||.||.||||||||||||||||||||.||.||.|||
RBAM_019570__ 389 GGGGCAGTTACCACGGCATTACTTTGGGAGCGCTTTCATTATCGGGGTTT 438
BSNT_03222___ 439 TATGAAAGGAGATACCGGTTCACCCATCTCATTGAGCGGTATCCAGCTAT 488
||.|||.||||||||||.||||||||..|..|.||.||||.|||.||..|
RBAM_019570__ 439 TACGAACGGAGATACCGCTTCACCCAGTTGCTCGAACGGTTTCCGGCCGT 488
BSNT_03222___ 489 CTCAGCTCCACATATTTATCG------GCTGAATTATGAGACGGAAGAAG 532
.||||||||..||||.||||| ||||.| ||.|||.|
RBAM_019570__ 489 TTCAGCTCCTAATATGTATCGTTCAGAGCTGCA---------GGGAGAGG 529
BSNT_03222___ 533 ACTTTGTTCAGACTGCAGCTGATGAACTGGACAC-TATGATCAAAAGAAT 581
|.|||||..|..||||.||.|.|||||||||.|| ..||.|| ||.|.||
RBAM_019570__ 530 AATTTGTGAAAGCTGCGGCGGCTGAACTGGAAACGGCTGTTC-AACGGAT 578
BSNT_03222___ 582 CGGAAGCCAATTCATCGCCGGCTTTGTGGCTGAGCCTATTATTGGTGCTG 631
|||...|..|||.|||||.||.|||||.||.||.||.|||.|.||.||.|
RBAM_019570__ 579 CGGTTCCTCATTTATCGCGGGATTTGTCGCAGAACCGATTGTCGGAGCAG 628
BSNT_03222___ 632 CAGGAGCAGCGATTACTCCGCCTCCGGGATATTATG-AGAGATTAAGTGA 680
|.||.||.||.||.||||||||..|.||.||||||| ||.|.||.|| ||
RBAM_019570__ 629 CCGGGGCGGCCATCACTCCGCCGGCAGGTTATTATGAAGCGCTTGAG-GA 677
BSNT_03222___ 681 GGTATGCCGCACACACGATGTGCTTTTTATTGCAGATGAAGTGATGACGG 730
.||.||||||...||||.|.|..|.|||||.||.||||||||.|||||||
RBAM_019570__ 678 TGTCTGCCGCCGGCACGGTATTTTGTTTATCGCGGATGAAGTCATGACGG 727
BSNT_03222___ 731 GGCTTGGGAGAACAGGAAGGATGCTCGCGACAGAGCATTGGGACACCGTA 780
||||.|||||||||||..|||||||.||..|.||||||||||..|.||.|
RBAM_019570__ 728 GGCTCGGGAGAACAGGGCGGATGCTTGCTTCTGAGCATTGGGGGATCGCA 777
BSNT_03222___ 781 CCTGATATTGCTGTACTGGGGAAGGGACTCGGTGCGGGGTATGCACCTAT 830
||||||||.||.||.||.||.||.||..|.||.||.||.||.||.||.||
RBAM_019570__ 778 CCTGATATCGCGGTGCTCGGAAAAGGGTTAGGCGCCGGTTACGCTCCGAT 827
BSNT_03222___ 831 TGCCGCTGCCGTCGTATCTGATTCTATTATTGAAACGATAAAACAAGGGT 880
|||.||.|||||.|..||||||...||.|||||||||||.||.|..||.|
RBAM_019570__ 828 TGCGGCAGCCGTTGCGTCTGATGACATCATTGAAACGATCAAGCGGGGCT 877
BSNT_03222___ 881 CAGGTGTGATTATGAGCGGTCACACATATAGTGCACATCCC-TATTCAGC 929
|.||.||.|||||||||||.||.||.||.||||| ||.||| ||.|..||
RBAM_019570__ 878 CCGGGGTCATTATGAGCGGACATACGTACAGTGC-CAACCCATACTGTGC 926
BSNT_03222___ 930 CAAAGCTGCTCTTGAAGTTTTGCGATATGTGTTA--AAGCACG-GCTTGA 976
.|.|||.||.||||||||..|.||.|| ||||| ||.|||| || ||.
RBAM_019570__ 927 AAGAGCGGCGCTTGAAGTGCTTCGCTA--TGTTAAGAAACACGAGC-TGC 973
BSNT_03222___ 977 TCAAACAATCAGAAAAAAAGGGCGCTGTGCTGAA---GAAA----AAGCT 1019
||...||.|||||..|.||.||||...||||||| |||| |||
RBAM_019570__ 974 TCCGGCAGTCAGAGGAGAAAGGCGTAATGCTGAAGCGGAAATTAGAAG-- 1021
BSNT_03222___ 1020 TGATGAGGCGGCATCTCAA-------AGCGGCATTATAGGTGATGTGCGC 1062
|..|||| |||||..|.||.||.|||||.|||
RBAM_019570__ 1022 ------------AAATCAAAGAGCGCAGCGGGGTGATTGGGGATGTCCGC 1059
BSNT_03222___ 1063 GGAAAAGGACTGCTATTAGGCATTGAATTTGTGGCAGACCAAAAAACGAA 1112
||.|||||.||.||..|.||..|||||||.||....||..|||..|||||
RBAM_019570__ 1060 GGTAAAGGCCTCCTGATCGGGGTTGAATTCGTTAAGGATAAAACGACGAA 1109
BSNT_03222___ 1113 GAAAGTGTTTCCGCCAGAGCAGGCGGTAACC--------CAGCTTATTGT 1154
|.|.||.|||.||..|.|.|||||..|.||| || |||
RBAM_019570__ 1110 GGACGTTTTTTCGAAAAAACAGGCCTTCACCGAAAAAATCA--TTA---- 1153
BSNT_03222___ 1155 CAGCGAGGCGAAAAAACGCGGGCTGATTGTTTATCCTTCCAAAG-CTGGA 1203
.||| |||.||||||||.||.|||.||.|||| ||.|.||||| |.||.
RBAM_019570__ 1154 AAGC--GGCAAAAAAACGGGGCCTGCTTATTTA-CCCTGCAAAGCCCGGC 1200
BSNT_03222___ 1204 ATAGACAGTGGAGAAGGAGATGCTGTCATTATTGCTCCTCCTTTTACCAT 1253
||.|||||.|||||||||||.||.|||||.||.||.||.||.||.||.||
RBAM_019570__ 1201 ATTGACAGCGGAGAAGGAGACGCCGTCATCATCGCCCCGCCGTTCACGAT 1250
BSNT_03222___ 1254 TTCAGACGTTGAAATGGAAGAGCTTATC---TCTATTTT-------TTCA 1293
.|||.|.|..||..||||.|||| |.|| |||||||| ..||
RBAM_019570__ 1251 CTCATATGCCGAGCTGGATGAGC-TGTCAGATCTATTTTCCCAGGCCGCA 1299
BSNT_03222___ 1294 GAAACAGTTGCAGCGGTCGAAAAAAACTTAAAAAAGGATTGA 1335
|||..|||| |||||||...|.||.|||||||||
RBAM_019570__ 1300 GAAGAAGTT---------GAAAAAATGATGAAGAAGGATTGA 1332
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