Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03219 and RBAM_019540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:18
# Commandline: needle
# -asequence dna-align/BSNT_03219___yodQ.1.9828.seq
# -bsequence dna-align/RBAM_019540___yodQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03219___yodQ-RBAM_019540___yodQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03219___yodQ-RBAM_019540___yodQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03219___yodQ
# 2: RBAM_019540___yodQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1352
# Identity: 980/1352 (72.5%)
# Similarity: 980/1352 (72.5%)
# Gaps: 97/1352 ( 7.2%)
# Score: 3460.0
#
#
#=======================================
BSNT_03219___ 1 ATGCAAGACATTGAAAGA-AAAGTAATCGAGTGGCTTGA-------TCAG 42
|||.|..| |||..|||| |||||.|..||||||...|| .|||
RBAM_019540__ 1 ATGGATCA-ATTAGAAGAGAAAGTCACTGAGTGGGCGGAAGAAAACACAG 49
BSNT_03219___ 43 CATTCGGCCAAAGCCATTCGTCTT-CTCAAAAGGCTCATTGGGGAAAAAA 91
|| |||||..|..| ||| ||.|||.||||.||.||||||||||
RBAM_019540__ 50 CA-------AAAGCGGTAAG-CTTGCTGAAACGGCTGATCGGGGAAAAAA 91
BSNT_03219___ 92 GCACATTGGGGTCA-GAGTTTAACGCCCAAGCTGTTGTGCTTGAAAAGCT 140
||||.|| .||.|| ||.||||||||.||.||.||.||..|.|||||.||
RBAM_019540__ 92 GCACGTT-CGGCCATGAATTTAACGCACAGGCAGTCGTTTTAGAAAAACT 140
BSNT_03219___ 141 GCGGCAATTTCATATGGACATTGATGTATGGGAGCCAAGCATAAAGCAAT 190
|.|.||.|||.|.|||||.|||||||||||||||||.||..|.||.||.|
RBAM_019540__ 141 GAGACAGTTTGACATGGATATTGATGTATGGGAGCCGAGTGTCAAACATT 190
BSNT_03219___ 191 TAAAACAGCATCCCTACTTTAAATCT-AAC-CGATCCGATTTTCATGAGA 238
|.|||.|||||||.||.||...|||| ||| ||| .||.||.|||||.|
RBAM_019540__ 191 TGAAAGAGCATCCTTATTTCGTATCTGAACGCGA--AGACTTCCATGAAA 238
BSNT_03219___ 239 GCCCGAATATCGTGGC--TAAAAAAACGGGAGCCGGCGAAGGTAGGTCCC 286
|||||||||||...|| ||||.||| ||.|||||.|..||.||.||.|
RBAM_019540__ 239 GCCCGAATATCACAGCCGTAAAGAAA--GGGGCCGGGGGCGGAAGATCAC 286
BSNT_03219___ 287 TGATTTTGAACGGCCATATCGATGTTGTGCCTGAAGGAAGCGTAAAGGAT 336
||||..|||||||.|||||.||||||||.||.||||||| ||
RBAM_019540__ 287 TGATACTGAACGGACATATTGATGTTGTCCCGGAAGGAA---------AT 327
BSNT_03219___ 337 ---------TGGAAGTATGAACCGTATCAAGCTGTCGAAGAAAACGGTAA 377
||||.|||||||||||.|...|||||.|||.|..||||.||
RBAM_019540__ 328 CCCGCCGCATGGACGTATGAACCGTTTACCGCTGTTGAAAAGGACGGCAA 377
BSNT_03219___ 378 AATATACGGCCGCGGTTCAACGGATATGAAGGGAGGCAATACAGCCCTTC 427
|.|.|||||||||||.||||||||||||||.||.||||||||||||| ||
RBAM_019540__ 378 AGTTTACGGCCGCGGGTCAACGGATATGAAAGGCGGCAATACAGCCC-TC 426
BSNT_03219___ 428 TT-TTTGCTTTAGAAGCCCTGCACGCCTGCG-----ATGTCAAACTGAAG 471
|| |||||.||||||||.||..|.||||||| |.|| |.||.
RBAM_019540__ 427 TTGTTTGCGTTAGAAGCGCTTGAAGCCTGCGGGATTACGT-----TAAAA 471
BSNT_03219___ 472 GGAGATGTATTGTTTCAGAGTGTTGTAGATGAAGAGTGCGGCGGCGCCGG 521
||||||||..|||||||.|||||.|||||||||||||||||||||||.||
RBAM_019540__ 472 GGAGATGTCCTGTTTCAAAGTGTCGTAGATGAAGAGTGCGGCGGCGCGGG 521
BSNT_03219___ 522 TACACTGTCCGCCATCATGAGAGGCTATCGTGCTGACGGGGCACTGATTC 571
.||.|||||.||..|.|||||.|||||....|||||||||||.||.||||
RBAM_019540__ 522 AACGCTGTCGGCTGTTATGAGGGGCTACAAGGCTGACGGGGCGCTTATTC 571
BSNT_03219___ 572 CTGAACCGACGAATATGAAACTATTTATTAAGCAGCAGGGTTCGATGTGG 621
|.||||||||.|||.|.||.||.|||.||||||||||.||.||.||||||
RBAM_019540__ 572 CCGAACCGACTAATCTAAAGCTGTTTGTTAAGCAGCAAGGCTCTATGTGG 621
BSNT_03219___ 622 TTTCGGATCACTGTGAAGGGATTATCCGCACATGGGGGCACACGCTATGA 671
||.||.||.||.||.|.||||||.||||||||.||.|||||.||||||||
RBAM_019540__ 622 TTCCGCATTACGGTAAGGGGATTGTCCGCACACGGCGGCACCCGCTATGA 671
BSNT_03219___ 672 AGGGGTAAGCGCGATTGAAAAAAGCATGCACGTTATCACAG-CGTTACAA 720
||||||.|||||.||||||||||||.||||.||.||||||| |.||| ||
RBAM_019540__ 672 AGGGGTGAGCGCCATTGAAAAAAGCCTGCATGTCATCACAGCCCTTA-AA 720
BSNT_03219___ 721 GAGCTGGAGAAAGTCCGCAATGCGAGAATTTCAGATCCGCTGTAT---GA 767
|||||.||..|.||||||||.||..|.||..||||.|||||.||| ||
RBAM_019540__ 721 GAGCTTGAACACGTCCGCAACGCCCGTATCACAGACCCGCTTTATCGGGA 770
BSNT_03219___ 768 CAATATCCCAATACCGGTACCGGTGAATATCGGCACCATCTCAGGCGGTG 817
| .|.||.||.|||||.||..|.||||||||||||.||..|||.||..
RBAM_019540__ 771 C---GTTCCGATCCCGGTTCCCATTAATATCGGCACCGTCCAAGGGGGAA 817
BSNT_03219___ 818 CCTGGCCATCTTCAGTTGCAGACCGTGTCGTCATAGAAGGGAGATGCGGA 867
|.||||||||.||.||.||.||||||||.||.||||||||.||.||||||
RBAM_019540__ 818 CGTGGCCATCATCGGTAGCTGACCGTGTGGTGATAGAAGGCAGGTGCGGA 867
BSNT_03219___ 868 ATTGCTCCCCATGAGAAAACAGAAGCTGTAAAACTTGAATTGGAAAACTG 917
||.|||||..||||.|...|.|||||.||||||...||..|.|.||.|||
RBAM_019540__ 868 ATAGCTCCGGATGAAACGCCCGAAGCAGTAAAAGAAGAGCTCGCAAGCTG 917
BSNT_03219___ 918 GCTGAAGGATTTAGAATACCATGACGAATGGTTTAAACGCCATCCCGTAC 967
||||||.|||||.||.||||..||.||.||||||||||.|||.||.|...
RBAM_019540__ 918 GCTGAAAGATTTGGAGTACCGGGATGAGTGGTTTAAACACCACCCGGCGG 967
BSNT_03219___ 968 AAGTCGAATGGTTTGGCGCTCAATGGCTGCCGAATGATTTACCTGATGAT 1017
||.|.|||||||||||||||||.|||||.|||||||||.|.||.|||||.
RBAM_019540__ 968 AAATAGAATGGTTTGGCGCTCAGTGGCTTCCGAATGATCTCCCGGATGAG 1017
BSNT_03219___ 1018 CATCCTTTAATTTCTGTGCTGCAATCAGCCTATCAAAAAATGAAACAGAC 1067
|||||..|.|||||.|..|||.||||..|.|.|.|.|||||||||..|.|
RBAM_019540__ 1018 CATCCGCTGATTTCCGCTCTGGAATCTTCTTTTGAGAAAATGAAAGGGGC 1067
BSNT_03219___ 1068 AGAGCCGATTATTGAGGCTTCCCCGTGGGGAACGGATGGAGGGCTTTTGT 1117
|.|.|||.||..|||.||.|||||||||||||||||.||||||||||||.
RBAM_019540__ 1068 AAAACCGGTTCGTGAAGCGTCCCCGTGGGGAACGGACGGAGGGCTTTTGC 1117
BSNT_03219___ 1118 ACCATGCAGGAGATACACCAGTAATCGTTTTCGGGCCGGGGGAAACAAAA 1167
|.||.||.|||.|.||.||.||.|||||.|||||||||||.|||...||.
RBAM_019540__ 1118 AGCACGCGGGACAGACGCCGGTCATCGTCTTCGGGCCGGGAGAAGTCAAG 1167
BSNT_03219___ 1168 ACGGCTCATCAGGCCAATGAATACATTGAGGTTGAA-----GCCATGATA 1212
.||||.||||||||.|||||||||||||| || ||..|.||.
RBAM_019540__ 1168 GCGGCGCATCAGGCGAATGAATACATTGA-----AATCCGGGCGTTAATC 1212
BSNT_03219___ 1213 GAATCTGCTAAAATTATTGCACTTTTTGTCATGGATTGGTGCGGGCTTCA 1262
||..|.|..|||||.|||.|.||||||.|||||||.|||||||||.|
RBAM_019540__ 1213 GATGCCGTCAAAATCATTTCTCTTTTTATCATGGAATGGTGCGGGGT--- 1259
BSNT_03219___ 1263 TACAGATGGGGAGGATGCGGATGCTCAAGTCAATAAAG--AGT-AG---- 1305
..|||||||||..|| |||| ||| .|||||| |.| ||
RBAM_019540__ 1260 GGCAGATGGGGGTGA--CGGA-GCT------GATAAAGGAACTGAGGGCT 1300
BSNT_03219___ 1305 -- 1305
RBAM_019540__ 1301 GA 1302
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