Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03148 and RBAM_019070
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:00
# Commandline: needle
# -asequence dna-align/BSNT_03148___sqhC.1.9828.seq
# -bsequence dna-align/RBAM_019070___sqhC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03148___sqhC-RBAM_019070___sqhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03148___sqhC-RBAM_019070___sqhC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03148___sqhC
# 2: RBAM_019070___sqhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1995
# Identity: 1372/1995 (68.8%)
# Similarity: 1372/1995 (68.8%)
# Gaps: 207/1995 (10.4%)
# Score: 4592.5
#
#
#=======================================
BSNT_03148___ 1 ATGGGCACACTTCAGGAGAAAGTGAG-----GCGTTTTCAAAAGAAAACC 45
.||.|||||.||||.||.||.||.|| || ||||||||||||
RBAM_019070__ 1 GTGAGCACAATTCATGAAAATGTCAGAAGCCGC-----CAAAAGAAAACC 45
BSNT_03148___ 46 AT-TACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACATTTT 94
|| |.||.| ||||||||.|.|||||||||.||.||.||||||.||||||
RBAM_019070__ 46 ATCTCCCTA-TTAAGAGAAACGCAAAATGCGGACGGCTCATGGTCATTTT 94
BSNT_03148___ 95 GCTTTGAAGGACCAATCATGACAAATTCCTTTTTTATTTTGCTCCTTACC 144
|.|||||||||||.||..|||||||..|||||.|.||..|.||.||.||.
RBAM_019070__ 95 GTTTTGAAGGACCGATTTTGACAAACGCCTTTCTGATCCTCCTTCTCACT 144
BSNT_03148___ 145 TCACTAGATGAAGGCGAAAATGAAAAAGAACTGATATCATCCCTTGCAGC 194
||.|| .||.||.|||||.|||||||||||..|....|||||||.
RBAM_019070__ 145 TCTCT------TGGAGACAATGATAAAGAACTGATCGCTGAGCTTGCAGA 188
BSNT_03148___ 195 CGGCATTCATGCAAAACAGCAGCCAGACGGCACATTTATCAACTATCCCG 244
.|||||||..||.|||||||..||.|||||.||.|||..|||||||||.|
RBAM_019070__ 189 AGGCATTCGCGCTAAACAGCGCCCGGACGGAACTTTTGCCAACTATCCTG 238
BSNT_03148___ 245 A-----CGAAACGTGCGGAAATCTAACGGCTACCGTCCAAGGATATGTCG 289
| .|||| ||||||.|.||.|||||.||.||.||.||||.||
RBAM_019070__ 239 ATGACCGGAAA-----GGAAATGTGACCGCTACTGTACAGGGCTATGCCG 283
BSNT_03148___ 290 GGATGCTGGCTTCAGGATGTTTTCACAGATCTGAGCCGCACATGAAGAAA 339
|..||||||||||.||.|..|.|..|.|.||||||.||||.||||...|.
RBAM_019070__ 284 GCTTGCTGGCTTCCGGTTTATATAGCCGTTCTGAGGCGCATATGATTCAG 333
BSNT_03148___ 340 GCTGAACAATTTATCATCTCATATGGCGGTTTGAGACATGTTCATTTTAT 389
||.||||..||||||||||||.|||||||.|||.|..|.||.||.|||||
RBAM_019070__ 334 GCCGAACGCTTTATCATCTCAAATGGCGGCTTGCGCAACGTACACTTTAT 383
BSNT_03148___ 390 GACAAAATGGATGCTTGCCGCGAACGGGCTTTACCCTTGGCCTGCTTTGT 439
||||||.|||||||||||.||.|||||.|||||.||.|||||.||..||.
RBAM_019070__ 384 GACAAAGTGGATGCTTGCGGCAAACGGCCTTTATCCATGGCCCGCGCTGC 433
BSNT_03148___ 440 ATTTACCATTATCACTCATGGCGCTCCCCCCAACATTGCCGATTCATTTC 489
||.|.||||||||..||.|.|...|.||||||||.||.|||.|.|||||.
RBAM_019070__ 434 ATCTGCCATTATCTTTCTTAGTCATTCCCCCAACCTTCCCGCTGCATTTT 483
BSNT_03148___ 490 TATCAGTTCAGCTCATATGCCCGTATTCATTTTGCTCCTATGGCTGTAAC 539
||.||||||||..||||.||||||||||||||||..||.|||||.||.||
RBAM_019070__ 484 TACCAGTTCAGTACATACGCCCGTATTCATTTTGTACCGATGGCCGTGAC 533
BSNT_03148___ 540 ACTCAATCAGCGATTTGTC-CTTATTAACCGCAATATTTCATCTCTTCGC 588
.||.||..|..||||| || ||.|..||.|.||||.||||.|||| ||||
RBAM_019070__ 534 GCTTAACAAAAGATTT-TCGCTGAAAAATCCCAATGTTTCGTCTC-TCGC 581
BSNT_03148___ 589 -CATCTCGATCCGCACATGACAAAAAATCCTTTCACTTGGCTTCGGTCTG 637
|||.|.||||.|||.|||||.||||||||.||.||.||||||||.||.|
RBAM_019070__ 582 GCATTTAGATCGGCATATGACTAAAAATCCGTTTACATGGCTTCGTTCCG 631
BSNT_03148___ 638 ATGCTTTC--GATG---AAAGAGATCTCACGTCTATTTTGTCACATTGGA 682
| || |||| |.|||||.|||.|.|||.||||..|.||.||||
RBAM_019070__ 632 A-----TCAGGATGAGAACAGAGACCTCTCTTCTCTTTTCGCGCACTGGA 676
BSNT_03148___ 683 AACGCGTTT------TTCATGCACCATTTGCTTTTCAGCAGCTGGGCCTA 726
|.||..||| |||.||| .||||||||.|||||.||.||.
RBAM_019070__ 677 AGCGGCTTTTGCAGATTCCTGC------CGCTTTTCACCAGCTCGGTCTG 720
BSNT_03148___ 727 CAGACAGCTAAAACGTATATGCTGGACCGGATTGAAAAAGATGGAACATT 776
|..||.||.||||||||||||||.||||||||||||.||||.||.|||||
RBAM_019070__ 721 CGTACGGCCAAAACGTATATGCTTGACCGGATTGAAGAAGACGGCACATT 770
BSNT_03148___ 777 ATACAGCTATGCGAGCGCAACCATATATATGGTTTACAGCCTTCTGTCAC 826
||||||||||||||||||.||.||.|.||||||.|||.||||.||..|.|
RBAM_019070__ 771 ATACAGCTATGCGAGCGCCACTATTTTTATGGTGTACGGCCTGCTCGCTC 820
BSNT_03148___ 827 TTGGTGTGTCACGCTATTCTCCTATTATCAGGAGAGCGATTACCGGCATT 876
|.|||||.||.|||.|.||.||..||.||||.|.|||..||.||||||..
RBAM_019070__ 821 TCGGTGTATCGCGCCACTCCCCCGTTCTCAGAAAAGCACTTGCCGGCACG 870
BSNT_03148___ 877 AAA-------TCACTGGTGACTAAATGCAACGGG----ATTCCTTATCTG 915
||| |||| |.|| ||| || ||.||.||.|||
RBAM_019070__ 871 AAAGCTTTGCTCAC----GTCT---TGC----GGCAATATACCGTACCTG 909
BSNT_03148___ 916 GAAAACTCTACTTCAACTGTTTGGGATACAGCTCTAATCAGCTATGCCCT 965
|||||.||.||.||.||.|||||||||||.||.||..|||.||||||.||
RBAM_019070__ 910 GAAAATTCAACGTCGACCGTTTGGGATACGGCGCTTCTCAACTATGCGCT 959
BSNT_03148___ 966 TCAAAAAAATGGTGTGACCGA-AACG----GATGGCTCTGTTACAAAAGC 1010
|...||||..||..|..|.|| |||| |||| |.||.|
RBAM_019070__ 960 TATGAAAAGCGGCATCTCAGATAACGATCAGATG----------ATAACC 999
BSNT_03148___ 1011 A--GCCGAC---TTTTTGCTAGAACGCCAGCATACCAAAACAGCAGATTG 1055
| ||||.| |||.|||..|||||.|||||.|..|||...||.|||||
RBAM_019070__ 1000 AGCGCCGCCCGGTTTCTGCGTGAACGGCAGCAGAAGAAAGTCGCTGATTG 1049
BSNT_03148___ 1056 GTCTGTCAAAAATCCAAATTCAGTTCCTGGCGGCTGGGGGTTTTCAAACA 1105
|.|.||..|.||.||..||.|.|..||.||.||.|||||.||||||||||
RBAM_019070__ 1050 GGCCGTTCACAACCCGCATGCTGAACCGGGAGGATGGGGTTTTTCAAACA 1099
BSNT_03148___ 1106 TTAATACAAATAACCCTGACTGTGACGACACTGCAGCCGTTTTAAAGGCG 1155
|.|||||||||||.|||||.|||||.|||||.||.||.||..|.||.||.
RBAM_019070__ 1100 TCAATACAAATAATCCTGATTGTGATGACACAGCCGCAGTACTCAAAGCC 1149
BSNT_03148___ 1156 ATTCCCCGCAATCATTCTCCTGCAGCATGGGAGCGGGGGGTATCT----T 1201
|||||.||.||.|.||.|||.||..|||||||.||.|| .|| |
RBAM_019070__ 1150 ATTCCGCGAAAACTTTATCCCGCCTCATGGGAACGCGG----ACTGAGCT 1195
BSNT_03148___ 1202 GGCTTTTATCGATGCAAAACAATGACGGCGGATTTTCTGCTTTTGAAAAA 1251
|||||||.||.||||||||||.|||||||||.||.|||||||||||.|||
RBAM_019070__ 1196 GGCTTTTGTCCATGCAAAACAGTGACGGCGGCTTCTCTGCTTTTGAGAAA 1245
BSNT_03148___ 1252 AACGTGAACCATCCACTGATCCGCCTTCTGCCGCTTGAATCCGCCGAGGA 1301
||.||.||.|||||.|||.|||||||.||||||||.|||||.||.|||||
RBAM_019070__ 1246 AATGTCAATCATCCGCTGGTCCGCCTGCTGCCGCTGGAATCGGCTGAGGA 1295
BSNT_03148___ 1302 CGCTGCAGTTGACCCTTCAACCGCCGACCTCACCGGACGAGTACTGCACT 1351
.|||||..|.||.||.|||||...||||.|.||||||||.||.|||||||
RBAM_019070__ 1296 AGCTGCCATCGATCCCTCAACAAGCGACTTAACCGGACGGGTGCTGCACT 1345
BSNT_03148___ 1352 TTTTAGGCGAGAAAGTTGGCT---------TCACAGAAAAACAACAACAT 1392
.||||| |||||....|||| |||| |..||.
RBAM_019070__ 1346 GTTTAG--GAGAAGCGGGGCTTTCTTCTGATCAC----------CCTCAG 1383
BSNT_03148___ 1393 ATTCAACGCGCAGTGAAGTGGCT-ATTCGAACATCAGGAACAAAATGGGT 1441
|||.||...||.||..|.||||| ||.|| .|||||.|||.|..|.||.|
RBAM_019070__ 1384 ATTGAAAAGGCCGTCCAATGGCTGATCCG-CCATCAAGAAGAGGACGGAT 1432
BSNT_03148___ 1442 CTTGGTACGGCAGATGGGGTGTTTGCTACATTTACGGCACTTGGGCTGCT 1491
|.||||||||||||||||||||.|||||.|||||||||||.|||||.||.
RBAM_019070__ 1433 CGTGGTACGGCAGATGGGGTGTCTGCTATATTTACGGCACATGGGCAGCG 1482
BSNT_03148___ 1492 CTTACTGGTATGCATGCATGCGGGGTTGA-CCGAAAGCATCCCGGTATAC 1540
||.||.||.|||.|.||.|||||.| ||| ||.|||.|| ||||| |
RBAM_019070__ 1483 CTGACAGGGATGAAGGCTTGCGGCG-TGAGCCAAAACCA-CCCGG----C 1526
BSNT_03148___ 1541 -----AAAAGGCTCTGCGTTGGCTCAAATCCATACAAAATGATGACGGAA 1585
||||.||..|.||.|||||.||.|||||.|||||.||.|||||||
RBAM_019070__ 1527 CGTGAAAAAAGCGATCCGCTGGCTGAAGTCCATTCAAAACGAGGACGGAA 1576
BSNT_03148___ 1586 GCTGGGGAGAATCCTGCAAAAGCGCCGAAATCAAAACATATGTACCGC-T 1634
|||||||.||||||||.||||||||.|||...|||||.|||||.|||| |
RBAM_019070__ 1577 GCTGGGGGGAATCCTGTAAAAGCGCAGAAGAGAAAACCTATGTTCCGCTT 1626
BSNT_03148___ 1635 TCATAGAGGAACCATTGTACAAACGGCCTGGGCTTTAGACGCTTTGCT-C 1683
||.|| .||.||..|||||||.|||||.|||||....||.|||||||| |
RBAM_019070__ 1627 TCTTA-CGGGACGCTTGTACAGACGGCTTGGGCGGCCGAAGCTTTGCTGC 1675
BSNT_03148___ 1684 ACATATGAAAATTCCGAACAT----CCGTCTGTTGTGAAAGGCATGCAAT 1729
| |||.|||||..|..|.||| ||||| ...|||||| ||
RBAM_019070__ 1676 A-ATACGAAAAAACTCATCATCAAGCCGTC----ACAAAAGGC-----AT 1715
BSNT_03148___ 1730 ACCTT------------ACCGACAGCAGTTCGCATAGCGCCGAT---AGC 1764
|.||| |||| |||.|.|| |..|.||||.| |||
RBAM_019070__ 1716 ATCTTTTCTTATTGAAAACCG---GCATTACG-AAGGAGCCGCTTTCAGC 1761
BSNT_03148___ 1765 CTCGCGTATCCAGCAGGGATCGGATTGCCGAAGCAATTTTATATTCGCTA 1814
|||||..|.||.|||||..||||||||||.|||||.||..|.||
RBAM_019070__ 1762 ------TATCCGACCGGAATCGGCCTGCCGAAGCAGTTTTACATCAGGTA 1805
BSNT_03148___ 1815 TCACAGTTATCCATATGTATTCTCTTTGCTGGCTGTCGGGAAATATTTAG 1864
||||||.||.||.|||||.||.||||||||.||..||.|.|
RBAM_019070__ 1806 TCACAGCTACCCGTATGTGTTTTCTTTGCTTGCGCTCAGCA--------- 1846
BSNT_03148___ 1865 ATTCTAT---------TGAAAAGGAGACAG-CAAATGAAACGTGA 1899
.||.||| ||||||||||..|| .||||||
RBAM_019070__ 1847 CTTTTATGAAAATGAGTGAAAAGGAGGAAGAAAAATGA------- 1884
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