Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03140 and RBAM_019010

See Amino acid alignment / Visit BSNT_03140 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:00
# Commandline: needle
#    -asequence dna-align/BSNT_03140___yozN.1.9828.seq
#    -bsequence dna-align/RBAM_019010___yozN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03140___yozN-RBAM_019010___yozN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03140___yozN-RBAM_019010___yozN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03140___yozN
# 2: RBAM_019010___yozN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 278
# Identity:     220/278 (79.1%)
# Similarity:   220/278 (79.1%)
# Gaps:          19/278 ( 6.8%)
# Score: 896.5
# 
#
#=======================================

BSNT_03140___      1 GTGGTTCAACCAACTCCGTATATCAATATTAATATTTTCATGCTGAAAAT     50
                     |||||||||||||||||.||||||||||||||||||||||||.|||||||
RBAM_019010__      1 GTGGTTCAACCAACTCCATATATCAATATTAATATTTTCATGTTGAAAAT     50

BSNT_03140___     51 TAATTCCTTTGAAAATGCTTCAGCGGTTAACGTAGGACAAAATTTATTGG    100
                     |||||||||||||||||||||||||||.||.||.||||||||||||.|||
RBAM_019010__     51 TAATTCCTTTGAAAATGCTTCAGCGGTGAATGTCGGACAAAATTTACTGG    100

BSNT_03140___    101 CAGAATGGCAAAATTCTGATAAAAAAAATCAAGGCTACGGACAGAATTTT    150
                     |.||||||||.||||||||||||||.|||||.||.|||||||||||.||.
RBAM_019010__    101 CGGAATGGCAGAATTCTGATAAAAAGAATCAGGGATACGGACAGAACTTC    150

BSNT_03140___    151 GGAGATGCGAGCGGATTTATGGGCACGAGAAGCCATGTGGATGACAGAGA    200
                     ||||||||.|||||.||.||.|||||||...||.|.||||||||..|.||
RBAM_019010__    151 GGAGATGCAAGCGGCTTCATCGGCACGAACGGCAAAGTGGATGATCGGGA    200

BSNT_03140___    201 CCAAATTGATTCTCCGGCCTCTTTTGAAAGTG-AAGCGGTTAACTCCTCA    249
                     .||||||||||||||..|..|.|||||...|| |.|||.|.||.|||   
RBAM_019010__    201 TCAAATTGATTCTCCATCTACCTTTGAGTCTGCATGCGATAAAATCC---    247

BSNT_03140___    250 ATC------AAAAGGAAG-------TGA    264
                       |      |||||||.|       |||
RBAM_019010__    248 --CTGCCGGAAAAGGAGGCCCATTATGA    273


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.