Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03131 and RBAM_018970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_03131___yocI.1.9828.seq
# -bsequence dna-align/RBAM_018970___yocI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03131___yocI-RBAM_018970___yocI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03131___yocI-RBAM_018970___yocI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03131___yocI
# 2: RBAM_018970___yocI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1815
# Identity: 1368/1815 (75.4%)
# Similarity: 1368/1815 (75.4%)
# Gaps: 75/1815 ( 4.1%)
# Score: 4982.0
#
#
#=======================================
BSNT_03131___ 1 ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAA 50
|||.|..|.|.||||||||||||||||||.|||||||||||.||.|| .|
RBAM_018970__ 1 ATGCTGGAGAAAGCCCAATCCCTTCTGGCGCATTATTTTGGCTACGA-CA 49
BSNT_03131___ 51 GT-TTCGGAGC-GGCCAAGATGAAGCG-----ATCCGCTTGGTGACGGAA 93
|| ||| |.|| ||||||.|..|.||| |||.| |||..|| |||
RBAM_018970__ 50 GTCTTC-GCGCGGGCCAAAAGCAGGCGATACAATCAG-TTGCAGA--GAA 95
BSNT_03131___ 94 GCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGAT 143
.||..||||.||||.|||||||||||||||.||.|||||.|||||.||
RBAM_018970__ 96 --AAGAAAAAACACGGTCTGCATTATGCCGACAGGGGGCGGAAAATCAAT 143
BSNT_03131___ 144 TTGCTATCAAATTCCGGCATTAATGTTTGAAGGGACGACGATCGTCATAT 193
.||||||||.|||||.|||.|..||||||||||.||.||.|||||.||.|
RBAM_018970__ 144 CTGCTATCAGATTCCCGCACTGCTGTTTGAAGGAACCACAATCGTTATTT 193
BSNT_03131___ 194 CACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAAGCG 243
|.||..|.||||||||.|||||.||||||||.||.|||.|.|||||||||
RBAM_018970__ 194 CCCCTCTTATTTCCTTAATGAAAGATCAAGTCGACGCGCTTGAAGAAGCG 243
BSNT_03131___ 244 GGGATTAACGCCGCCTACATTAACAGCACACA-ATCCAATCAG-GAAATA 291
||.||....||.||.||.|||||||||||.|| | |||.|.| ||.||.
RBAM_018970__ 244 GGTATCGCGGCAGCTTATATTAACAGCACCCAGA--CAAGCCGTGACATT 291
BSNT_03131___ 292 TATGAGAGGCTGAACGGACTCAAAGAAGGGGCTTATAAGCTTTTTTACAT 341
.|||||.|.||||.|||..|.|||.||||||||||...|||.||||||||
RBAM_018970__ 292 CATGAGCGCCTGACCGGTTTGAAACAAGGGGCTTACCGGCTCTTTTACAT 341
BSNT_03131___ 342 TACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCA 391
.|||||.|||||..|.||.||..|.||.||.||.|..||..|||||
RBAM_018970__ 342 CACACCGGAGCGTTTGACTTCTTCTGAATTCATTCACATCCTGCAG---- 387
BSNT_03131___ 392 TAGAT----GTTCCTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCA 437
.|.|| ||||||.|.|||||.||.|||||.||.||||||||.||.||
RBAM_018970__ 388 AATATTACGGTTCCTCTTGTCGCCATTGACGAAGCTCACTGTATATCGCA 437
BSNT_03131___ 438 ATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATCTTGTTCC 487
||||||.||||||||||||||.||.|||.|||||||.||||||.|.||..
RBAM_018970__ 438 ATGGGGACATGATTTCAGGCCGAGTTACCGGAATATCGAAATCCTTTTTA 487
BSNT_03131___ 488 GTGAATTACACGACAAGCCTGTTATCATGGCGTTAACAGCAACAGCCACA 537
.|||||||.|.||...|||.||.|||||.||.|||||.||.||.||.||.
RBAM_018970__ 488 ATGAATTAAAAGAACCGCCCGTCATCATCGCATTAACGGCGACGGCTACG 537
BSNT_03131___ 538 CCCGAGGTTCATGATGATATTTGCAAACAGCTGCATATTCAAAAAGAAAA 587
||.||||||||||||||.||.|||||||||||.||||||.|.||||||.|
RBAM_018970__ 538 CCTGAGGTTCATGATGACATCTGCAAACAGCTTCATATTAAGAAAGAACA 587
BSNT_03131___ 588 CACGGTATATACAGGATTTTCACGAGAGAATTTAACCTTTAAAGTAGTAA 637
.||.||||||||.||.|||.|..|||||||||||||.|||||||||||||
RBAM_018970__ 588 AACTGTATATACCGGTTTTGCCAGAGAGAATTTAACGTTTAAAGTAGTAA 637
BSNT_03131___ 638 AAGGAGAAAATAAAGATCGGTTTATAGA-CGAATATGTGCAAAACAACAG 686
|.||.|||||.|||||.||||||||.|| || .||..||.||||.||.|.
RBAM_018970__ 638 AGGGCGAAAACAAAGACCGGTTTATCGAGCG-GTACCTGGAAAAAAATAA 686
BSNT_03131___ 687 GCATGAAGCAGGAATTGTCTATACAGCGACCAGAAAAGAAGCTGATCGGA 736
.||.|||||.||.|||.|.|||||||||||.|||||||||.|.||.||..
RBAM_018970__ 687 ACACGAAGCCGGCATTATATATACAGCGACAAGAAAAGAAACCGACCGTT 736
BSNT_03131___ 737 TATATGAGAGATTGAAACGAA-----ATCAAGTCAGGGCAGGCCGGTATC 781
|||||||.|.|||.|||||.| ||||| .||.|||||.||||
RBAM_018970__ 737 TATATGATAAATTAAAACGCAGCGGCATCAA-----TGCCGGCCGTTATC 781
BSNT_03131___ 782 ATGGAGGTATGGCTGATGATGAGAGAAAAGAGCAGCAGGAAAGGTTTCTT 831
|.||.||..||||.||||||||.||||||||.||||||||..||||||||
RBAM_018970__ 782 ACGGCGGATTGGCGGATGATGACAGAAAAGACCAGCAGGAGCGGTTTCTT 831
BSNT_03131___ 832 AATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTAT 881
||.|||.||.|.|||||||||||.||.||.||.|||||.||||||||.||
RBAM_018970__ 832 AACGATCAGATACAAGTGATGGTAGCTACGTCCGCTTTCGGAATGGGAAT 881
BSNT_03131___ 882 TGATAA-ATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGAT 930
.||||| |.| ||.||||||||.|||.||||.||.||.||.|||||||||
RBAM_018970__ 882 CGATAAGAGC-AACATCAGATTCGTTTTGCACGCGCAGATTCCGAAAGAT 930
BSNT_03131___ 931 ATGGAAAGCTATTATCAAGAGGCAGGACGAGCTGGACGGGACGGTCTTGC 980
|||||.||||||||.|||||.||.|||||.||.||.||.||.||||||..
RBAM_018970__ 931 ATGGAGAGCTATTACCAAGAAGCCGGACGGGCCGGGCGCGATGGTCTTAA 980
BSNT_03131___ 981 CAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGTT 1030
|||.||.|||||.|||.|||||||.|||||||||||||||||||||||||
RBAM_018970__ 981 CAGCGAGTGTGTGCTCTTGTTTTCGCCGCAGGATATTATGGTGCAGCGTT 1030
BSNT_03131___ 1031 TCTTAATTGAGCAAT-------CAGAACATGAAGAGAAACAAAAGCAGGA 1073
|.|||||.||.|||| |.|| |||||.||||||||||||||
RBAM_018970__ 1031 TTTTAATAGACCAATCGGCCGCCGGA----GAAGAAAAACAAAAGCAGGA 1076
BSNT_03131___ 1074 TTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATTGTC 1123
|.|.|||||.||||||||.|||||.||.||||||||||||||||||||.|
RBAM_018970__ 1077 TCTCAAAAAACTGAGACAGATGGTGGATTACTGTCATACGGAAGATTGCC 1126
BSNT_03131___ 1124 TGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTAATGCGTGC 1173
|||||||.|||||.||.|.|||||||||.||.||.|||.|..|.||.|||
RBAM_018970__ 1127 TGCAGCGGTTTATTCTGAAGTATTTCGGCGAGAATGAGGCGGAAGCTTGC 1176
BSNT_03131___ 1174 GGA-CAGTGCGGAAACTGTACCGATACAAGAGCGGCCCATGACGTGACGC 1222
||| || |||||.||.||.||.||||||||..|.|||||||||||.||..
RBAM_018970__ 1177 GGAGCA-TGCGGCAATTGCACTGATACAAGGACCGCCCATGACGTCACAA 1225
BSNT_03131___ 1223 GGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTT 1272
..||.|||||.|||||.||.||.||.|||||..|.|||||.||.||.||.
RBAM_018970__ 1226 AAGAAGCGCAGATGGTATTGTCATGCATCATCAGAATGAATGAGCGCTTC 1275
BSNT_03131___ 1273 GGCAAGACGATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGT 1322
||.||.||||||||.||.|||||||||..|||.||.||||||||||||||
RBAM_018970__ 1276 GGAAAAACGATGGTGGCGCAGGTGCTTAGCGGGTCAAAAAATAAAAAAGT 1325
BSNT_03131___ 1323 TCTTGAAAACGGCTTTTCAG--ACCTCTCAACATACGGGATATTAAAACA 1370
.||.||||||||| ||||| .|||.||.||.|||||.||..|.||.||
RBAM_018970__ 1326 GCTGGAAAACGGC--TTCAGCAGCCTGTCCACTTACGGCATTATGAAGCA 1373
BSNT_03131___ 1371 CCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACG 1420
.|||||||..|..||||||||.||||||||||||||.||||||||.||.|
RBAM_018970__ 1374 TCAATCCGCAGCGGAAATCAGTGATTTTATCGAATTCCTTATTTCAGATG 1423
BSNT_03131___ 1421 ACTTCATCAGGATGTCAGACGGAACGTTTCCGACTCTTTTTGTCAGTAGT 1470
|.|..|||||.|||.|.|||||.||.||||||||.|||.|.||||.....
RBAM_018970__ 1424 AATATATCAGAATGGCGGACGGCACATTTCCGACGCTTATGGTCACCCAA 1473
BSNT_03131___ 1471 AAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC 1520
|||||.|||.||||..||...|||.||....||||.||||||||||||||
RBAM_018970__ 1474 AAAGGCAGGGATGTTTTGCTTGGAAAAAGCGCAGTCGCGAGAAAAGAAGC 1523
BSNT_03131___ 1521 GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATT-- 1568
.|||.|.||.||.||..||||.||||||||.||..||||||| |.||
RBAM_018970__ 1524 CTTACAGGCCGCCGCCGTTACCGAAAATGATGAATTATTTGA--GCTTCT 1571
BSNT_03131___ 1569 ---GCG-CATGGTTCGGAAAGAAATTGCGGCTGATCAGGGTGTTCCGCCA 1614
||| | |.||.|||||.|||||.|||||.|||||.||.||.|||
RBAM_018970__ 1572 CCGGCGTC----TCCGCAAAGAGATTGCAGCTGAACAGGGCGTGCCTCCA 1617
BSNT_03131___ 1615 TTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCC 1664
|||||.||.|||||.||.||.|||||||||||||||||.|..|||| ..|
RBAM_018970__ 1618 TTTGTCGTGTTCTCAGATCAGACGTTAAAAGAAATGTCGGCGAAAC-TTC 1666
BSNT_03131___ 1665 CGTAAA-TGATGATGAACTTTTGTCTATAAAAGGAGTCGGAGAACAAAAA 1713
||.||| .|||.|.||.|||.|.||..|||||||.|||||.|||||||||
RBAM_018970__ 1667 CGAAAACAGATCAGGATCTTCTTTCCGTAAAAGGGGTCGGGGAACAAAAA 1716
BSNT_03131___ 1714 AGAGCAAAATACGG-CCGGCTTTTTTTACAAGAAATACAAGCTTATGCAA 1762
|||...|||||||| .||| ||||||||.|||||||.|.|..|||||.||
RBAM_018970__ 1717 AGATTGAAATACGGAGCGG-TTTTTTTAGAAGAAATCCGAAATTATGTAA 1765
BSNT_03131___ 1763 G-GATGACAGACTAA 1776
| || .|||||.|.|
RBAM_018970__ 1766 GAGA-AACAGAGTGA 1779
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